Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02824 and MPMX20_02825 are separated by 103 nucleotides MPMX20_02825 and MPMX20_02826 are separated by 285 nucleotides MPMX20_02826 and MPMX20_02827 are separated by 845 nucleotides
MPMX20_02824: MPMX20_02824 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 2,982,870 to 2,983,586
_02824
MPMX20_02825: MPMX20_02825 - Cold shock-like protein CspB, at 2,983,690 to 2,983,902
_02825
MPMX20_02826: MPMX20_02826 - Cold shock-like protein CspB, at 2,984,188 to 2,984,406
_02826
MPMX20_02827: MPMX20_02827 - hypothetical protein, at 2,985,252 to 2,985,479
_02827
Position (kb)
2984
2985 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2983.221 kb on - strand, within MPMX20_02824 at 2983.228 kb on + strand, within MPMX20_02824 at 2983.228 kb on + strand, within MPMX20_02824 at 2983.231 kb on - strand, within MPMX20_02824 at 2983.236 kb on - strand, within MPMX20_02824 at 2983.236 kb on - strand, within MPMX20_02824 at 2983.236 kb on - strand, within MPMX20_02824 at 2983.246 kb on - strand, within MPMX20_02824 at 2983.333 kb on + strand, within MPMX20_02824 at 2983.333 kb on + strand, within MPMX20_02824 at 2983.333 kb on + strand, within MPMX20_02824 at 2983.333 kb on + strand, within MPMX20_02824 at 2983.333 kb on + strand, within MPMX20_02824 at 2983.341 kb on - strand, within MPMX20_02824 at 2983.341 kb on - strand, within MPMX20_02824 at 2983.341 kb on - strand, within MPMX20_02824 at 2983.341 kb on - strand, within MPMX20_02824 at 2983.341 kb on - strand, within MPMX20_02824 at 2983.341 kb on - strand, within MPMX20_02824 at 2983.376 kb on - strand, within MPMX20_02824 at 2983.467 kb on + strand, within MPMX20_02824 at 2983.468 kb on + strand, within MPMX20_02824 at 2983.476 kb on - strand, within MPMX20_02824 at 2983.476 kb on - strand, within MPMX20_02824 at 2983.492 kb on + strand, within MPMX20_02824 at 2983.492 kb on + strand, within MPMX20_02824 at 2983.493 kb on + strand, within MPMX20_02824 at 2983.494 kb on + strand, within MPMX20_02824 at 2983.494 kb on + strand, within MPMX20_02824 at 2983.521 kb on + strand at 2983.530 kb on + strand at 2983.531 kb on + strand at 2983.531 kb on + strand at 2983.538 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.595 kb on + strand at 2983.612 kb on + strand at 2983.739 kb on + strand, within MPMX20_02825 at 2983.739 kb on + strand, within MPMX20_02825 at 2983.739 kb on + strand, within MPMX20_02825 at 2983.739 kb on + strand, within MPMX20_02825 at 2983.840 kb on + strand, within MPMX20_02825 at 2983.846 kb on + strand, within MPMX20_02825 at 2983.846 kb on + strand, within MPMX20_02825 at 2983.858 kb on + strand, within MPMX20_02825 at 2983.858 kb on + strand, within MPMX20_02825 at 2984.095 kb on + strand at 2984.106 kb on + strand at 2984.279 kb on - strand, within MPMX20_02826 at 2984.296 kb on - strand, within MPMX20_02826 at 2984.368 kb on + strand, within MPMX20_02826 at 2984.384 kb on + strand, within MPMX20_02826 at 2984.384 kb on + strand, within MPMX20_02826 at 2984.384 kb on + strand, within MPMX20_02826 at 2984.384 kb on + strand, within MPMX20_02826 at 2984.526 kb on - strand at 2984.526 kb on - strand at 2984.526 kb on - strand at 2984.530 kb on - strand at 2984.538 kb on + strand at 2984.538 kb on - strand at 2984.546 kb on - strand at 2984.732 kb on + strand at 2984.740 kb on - strand at 2984.744 kb on + strand at 2984.752 kb on - strand at 2985.196 kb on - strand at 2985.204 kb on + strand at 2985.285 kb on - strand, within MPMX20_02827 at 2985.294 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.305 kb on + strand, within MPMX20_02827 at 2985.306 kb on + strand, within MPMX20_02827 at 2985.313 kb on + strand, within MPMX20_02827 at 2985.313 kb on + strand, within MPMX20_02827
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 2,983,221 - MPMX20_02824 0.49 -0.6 2,983,228 + MPMX20_02824 0.50 -0.5 2,983,228 + MPMX20_02824 0.50 +0.4 2,983,231 - MPMX20_02824 0.50 -0.1 2,983,236 - MPMX20_02824 0.51 -1.5 2,983,236 - MPMX20_02824 0.51 -1.2 2,983,236 - MPMX20_02824 0.51 +1.0 2,983,246 - MPMX20_02824 0.52 +0.0 2,983,333 + MPMX20_02824 0.65 -1.7 2,983,333 + MPMX20_02824 0.65 -0.6 2,983,333 + MPMX20_02824 0.65 -0.4 2,983,333 + MPMX20_02824 0.65 -1.9 2,983,333 + MPMX20_02824 0.65 -0.6 2,983,341 - MPMX20_02824 0.66 +1.1 2,983,341 - MPMX20_02824 0.66 +0.3 2,983,341 - MPMX20_02824 0.66 -1.5 2,983,341 - MPMX20_02824 0.66 +0.1 2,983,341 - MPMX20_02824 0.66 -0.3 2,983,341 - MPMX20_02824 0.66 -0.5 2,983,376 - MPMX20_02824 0.71 -3.2 2,983,467 + MPMX20_02824 0.83 +0.1 2,983,468 + MPMX20_02824 0.83 -0.3 2,983,476 - MPMX20_02824 0.85 -0.6 2,983,476 - MPMX20_02824 0.85 -1.2 2,983,492 + MPMX20_02824 0.87 -0.7 2,983,492 + MPMX20_02824 0.87 -0.6 2,983,493 + MPMX20_02824 0.87 -0.3 2,983,494 + MPMX20_02824 0.87 +0.4 2,983,494 + MPMX20_02824 0.87 +1.2 2,983,521 + +0.1 2,983,530 + +1.1 2,983,531 + -1.2 2,983,531 + +0.5 2,983,538 + -0.5 2,983,581 + -1.0 2,983,581 + +3.0 2,983,581 + -0.4 2,983,581 + -1.6 2,983,581 + -0.9 2,983,581 + -0.0 2,983,581 + +0.0 2,983,581 + -0.1 2,983,581 + +0.8 2,983,581 + +0.9 2,983,581 + +0.5 2,983,581 + -0.1 2,983,581 + +2.0 2,983,581 + +0.6 2,983,595 + -1.2 2,983,612 + -1.2 2,983,739 + MPMX20_02825 0.23 +0.0 2,983,739 + MPMX20_02825 0.23 -0.4 2,983,739 + MPMX20_02825 0.23 +0.3 2,983,739 + MPMX20_02825 0.23 -0.1 2,983,840 + MPMX20_02825 0.70 +0.6 2,983,846 + MPMX20_02825 0.73 +0.6 2,983,846 + MPMX20_02825 0.73 -0.4 2,983,858 + MPMX20_02825 0.79 -2.6 2,983,858 + MPMX20_02825 0.79 -1.0 2,984,095 + +1.0 2,984,106 + +0.3 2,984,279 - MPMX20_02826 0.42 -0.3 2,984,296 - MPMX20_02826 0.49 +1.4 2,984,368 + MPMX20_02826 0.82 -2.1 2,984,384 + MPMX20_02826 0.89 -0.3 2,984,384 + MPMX20_02826 0.89 -0.3 2,984,384 + MPMX20_02826 0.89 -1.2 2,984,384 + MPMX20_02826 0.89 -1.0 2,984,526 - -1.2 2,984,526 - -0.0 2,984,526 - -0.6 2,984,530 - +0.6 2,984,538 + +1.6 2,984,538 - +0.8 2,984,546 - +0.2 2,984,732 + +1.2 2,984,740 - -2.0 2,984,744 + -0.4 2,984,752 - -0.3 2,985,196 - -2.1 2,985,204 + -1.8 2,985,285 - MPMX20_02827 0.14 -0.6 2,985,294 + MPMX20_02827 0.18 -1.4 2,985,305 + MPMX20_02827 0.23 +0.3 2,985,305 + MPMX20_02827 0.23 -0.6 2,985,305 + MPMX20_02827 0.23 +0.5 2,985,305 + MPMX20_02827 0.23 -0.3 2,985,305 + MPMX20_02827 0.23 +0.4 2,985,305 + MPMX20_02827 0.23 -0.8 2,985,305 + MPMX20_02827 0.23 -1.3 2,985,305 + MPMX20_02827 0.23 -1.1 2,985,305 + MPMX20_02827 0.23 -0.3 2,985,305 + MPMX20_02827 0.23 +1.4 2,985,305 + MPMX20_02827 0.23 +1.6 2,985,305 + MPMX20_02827 0.23 -1.4 2,985,305 + MPMX20_02827 0.23 +0.6 2,985,305 + MPMX20_02827 0.23 -0.7 2,985,305 + MPMX20_02827 0.23 -2.6 2,985,305 + MPMX20_02827 0.23 -0.2 2,985,305 + MPMX20_02827 0.23 +2.0 2,985,305 + MPMX20_02827 0.23 +1.6 2,985,305 + MPMX20_02827 0.23 -1.0 2,985,306 + MPMX20_02827 0.24 +2.0 2,985,313 + MPMX20_02827 0.27 +2.0 2,985,313 + MPMX20_02827 0.27 +0.0
Or see this region's nucleotide sequence