Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02792 and MPMX20_02793 overlap by 25 nucleotides MPMX20_02793 and MPMX20_02794 are separated by 16 nucleotides MPMX20_02794 and MPMX20_02795 are separated by 12 nucleotides
MPMX20_02792: MPMX20_02792 - hypothetical protein, at 2,948,602 to 2,950,986
_02792
MPMX20_02793: MPMX20_02793 - hypothetical protein, at 2,950,962 to 2,951,723
_02793
MPMX20_02794: MPMX20_02794 - hypothetical protein, at 2,951,740 to 2,952,288
_02794
MPMX20_02795: MPMX20_02795 - hypothetical protein, at 2,952,301 to 2,952,873
_02795
Position (kb)
2951
2952
2953 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2950.828 kb on + strand at 2950.871 kb on + strand at 2950.999 kb on + strand at 2951.007 kb on - strand at 2951.045 kb on + strand, within MPMX20_02793 at 2951.083 kb on - strand, within MPMX20_02793 at 2951.109 kb on - strand, within MPMX20_02793 at 2951.123 kb on + strand, within MPMX20_02793 at 2951.131 kb on - strand, within MPMX20_02793 at 2951.183 kb on - strand, within MPMX20_02793 at 2951.204 kb on - strand, within MPMX20_02793 at 2951.235 kb on - strand, within MPMX20_02793 at 2951.323 kb on + strand, within MPMX20_02793 at 2951.395 kb on - strand, within MPMX20_02793 at 2951.402 kb on + strand, within MPMX20_02793 at 2951.402 kb on + strand, within MPMX20_02793 at 2951.404 kb on + strand, within MPMX20_02793 at 2951.404 kb on + strand, within MPMX20_02793 at 2951.404 kb on + strand, within MPMX20_02793 at 2951.443 kb on - strand, within MPMX20_02793 at 2951.487 kb on - strand, within MPMX20_02793 at 2951.533 kb on + strand, within MPMX20_02793 at 2951.541 kb on - strand, within MPMX20_02793 at 2951.628 kb on + strand, within MPMX20_02793 at 2951.695 kb on + strand at 2951.703 kb on - strand at 2951.760 kb on - strand at 2951.766 kb on + strand at 2951.774 kb on - strand at 2951.787 kb on + strand at 2951.787 kb on + strand at 2951.795 kb on - strand, within MPMX20_02794 at 2951.834 kb on - strand, within MPMX20_02794 at 2951.859 kb on - strand, within MPMX20_02794 at 2951.909 kb on + strand, within MPMX20_02794 at 2951.969 kb on + strand, within MPMX20_02794 at 2951.969 kb on + strand, within MPMX20_02794 at 2952.001 kb on - strand, within MPMX20_02794 at 2952.026 kb on + strand, within MPMX20_02794 at 2952.079 kb on - strand, within MPMX20_02794 at 2952.142 kb on + strand, within MPMX20_02794 at 2952.217 kb on + strand, within MPMX20_02794 at 2952.249 kb on + strand at 2952.283 kb on + strand at 2952.291 kb on - strand at 2952.291 kb on - strand at 2952.314 kb on - strand at 2952.359 kb on - strand, within MPMX20_02795 at 2952.390 kb on + strand, within MPMX20_02795 at 2952.392 kb on + strand, within MPMX20_02795 at 2952.482 kb on + strand, within MPMX20_02795 at 2952.488 kb on + strand, within MPMX20_02795 at 2952.496 kb on - strand, within MPMX20_02795 at 2952.511 kb on - strand, within MPMX20_02795 at 2952.524 kb on - strand, within MPMX20_02795 at 2952.536 kb on - strand, within MPMX20_02795 at 2952.545 kb on - strand, within MPMX20_02795 at 2952.605 kb on - strand, within MPMX20_02795 at 2952.652 kb on + strand, within MPMX20_02795 at 2952.652 kb on + strand, within MPMX20_02795 at 2952.692 kb on - strand, within MPMX20_02795 at 2952.707 kb on + strand, within MPMX20_02795 at 2952.734 kb on + strand, within MPMX20_02795 at 2952.766 kb on + strand, within MPMX20_02795 at 2952.819 kb on - strand at 2952.821 kb on - strand at 2952.827 kb on + strand at 2952.840 kb on + strand at 2952.840 kb on + strand at 2952.892 kb on - strand at 2953.017 kb on + strand at 2953.017 kb on + strand at 2953.017 kb on + strand at 2953.025 kb on - strand at 2953.025 kb on - strand at 2953.025 kb on - strand at 2953.025 kb on - strand at 2953.106 kb on + strand at 2953.107 kb on + strand at 2953.114 kb on - strand at 2953.270 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 2,950,828 + -1.3 2,950,871 + -0.2 2,950,999 + +1.0 2,951,007 - +0.3 2,951,045 + MPMX20_02793 0.11 -1.5 2,951,083 - MPMX20_02793 0.16 +0.2 2,951,109 - MPMX20_02793 0.19 +0.3 2,951,123 + MPMX20_02793 0.21 -1.3 2,951,131 - MPMX20_02793 0.22 -0.8 2,951,183 - MPMX20_02793 0.29 -0.2 2,951,204 - MPMX20_02793 0.32 -0.8 2,951,235 - MPMX20_02793 0.36 -1.4 2,951,323 + MPMX20_02793 0.47 +0.2 2,951,395 - MPMX20_02793 0.57 -1.5 2,951,402 + MPMX20_02793 0.58 -2.0 2,951,402 + MPMX20_02793 0.58 -1.0 2,951,404 + MPMX20_02793 0.58 -1.0 2,951,404 + MPMX20_02793 0.58 -1.8 2,951,404 + MPMX20_02793 0.58 +0.2 2,951,443 - MPMX20_02793 0.63 -0.2 2,951,487 - MPMX20_02793 0.69 -0.4 2,951,533 + MPMX20_02793 0.75 +0.7 2,951,541 - MPMX20_02793 0.76 +0.0 2,951,628 + MPMX20_02793 0.87 -0.9 2,951,695 + -0.8 2,951,703 - -0.7 2,951,760 - -0.4 2,951,766 + +1.5 2,951,774 - +0.0 2,951,787 + -0.3 2,951,787 + -1.6 2,951,795 - MPMX20_02794 0.10 -1.6 2,951,834 - MPMX20_02794 0.17 -0.9 2,951,859 - MPMX20_02794 0.22 -0.4 2,951,909 + MPMX20_02794 0.31 -1.4 2,951,969 + MPMX20_02794 0.42 -1.0 2,951,969 + MPMX20_02794 0.42 +2.0 2,952,001 - MPMX20_02794 0.48 -0.7 2,952,026 + MPMX20_02794 0.52 -0.3 2,952,079 - MPMX20_02794 0.62 -2.7 2,952,142 + MPMX20_02794 0.73 -3.8 2,952,217 + MPMX20_02794 0.87 -1.2 2,952,249 + -2.4 2,952,283 + -0.5 2,952,291 - -0.8 2,952,291 - +0.2 2,952,314 - -0.6 2,952,359 - MPMX20_02795 0.10 +1.2 2,952,390 + MPMX20_02795 0.16 -0.2 2,952,392 + MPMX20_02795 0.16 -0.8 2,952,482 + MPMX20_02795 0.32 -0.1 2,952,488 + MPMX20_02795 0.33 -0.6 2,952,496 - MPMX20_02795 0.34 -0.6 2,952,511 - MPMX20_02795 0.37 -2.1 2,952,524 - MPMX20_02795 0.39 +2.0 2,952,536 - MPMX20_02795 0.41 -1.0 2,952,545 - MPMX20_02795 0.43 -1.3 2,952,605 - MPMX20_02795 0.53 +0.3 2,952,652 + MPMX20_02795 0.61 -1.6 2,952,652 + MPMX20_02795 0.61 -0.6 2,952,692 - MPMX20_02795 0.68 -1.1 2,952,707 + MPMX20_02795 0.71 -0.2 2,952,734 + MPMX20_02795 0.76 -1.0 2,952,766 + MPMX20_02795 0.81 -0.1 2,952,819 - -1.9 2,952,821 - -0.8 2,952,827 + -1.4 2,952,840 + +0.2 2,952,840 + +0.1 2,952,892 - -0.8 2,953,017 + -0.2 2,953,017 + -1.2 2,953,017 + -0.2 2,953,025 - -1.0 2,953,025 - -1.8 2,953,025 - -0.2 2,953,025 - +2.6 2,953,106 + -1.7 2,953,107 + -1.3 2,953,114 - -0.4 2,953,270 + -0.1
Or see this region's nucleotide sequence