Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02766 and MPMX20_02767 are separated by 8 nucleotides MPMX20_02767 and MPMX20_02768 are separated by 80 nucleotides MPMX20_02768 and MPMX20_02769 are separated by 34 nucleotides
MPMX20_02766: MPMX20_02766 - Holliday junction ATP-dependent DNA helicase RuvB, at 2,921,686 to 2,922,696
_02766
MPMX20_02767: MPMX20_02767 - Holliday junction ATP-dependent DNA helicase RuvA, at 2,922,705 to 2,923,316
_02767
MPMX20_02768: MPMX20_02768 - Crossover junction endodeoxyribonuclease RuvC, at 2,923,397 to 2,923,918
_02768
MPMX20_02769: MPMX20_02769 - putative transcriptional regulatory protein YebC, at 2,923,953 to 2,924,693
_02769
Position (kb)
2922
2923
2924 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2921.778 kb on + strand at 2921.778 kb on + strand at 2921.893 kb on - strand, within MPMX20_02766 at 2921.903 kb on - strand, within MPMX20_02766 at 2922.050 kb on - strand, within MPMX20_02766 at 2922.194 kb on - strand, within MPMX20_02766 at 2922.335 kb on + strand, within MPMX20_02766 at 2922.355 kb on - strand, within MPMX20_02766 at 2922.389 kb on - strand, within MPMX20_02766 at 2922.389 kb on - strand, within MPMX20_02766 at 2922.389 kb on - strand, within MPMX20_02766 at 2922.391 kb on + strand, within MPMX20_02766 at 2922.440 kb on - strand, within MPMX20_02766 at 2922.458 kb on - strand, within MPMX20_02766 at 2922.491 kb on + strand, within MPMX20_02766 at 2922.626 kb on - strand at 2922.881 kb on + strand, within MPMX20_02767 at 2922.892 kb on + strand, within MPMX20_02767 at 2922.900 kb on - strand, within MPMX20_02767 at 2922.916 kb on + strand, within MPMX20_02767 at 2922.916 kb on + strand, within MPMX20_02767 at 2922.979 kb on + strand, within MPMX20_02767 at 2922.987 kb on - strand, within MPMX20_02767 at 2923.001 kb on - strand, within MPMX20_02767 at 2923.034 kb on - strand, within MPMX20_02767 at 2923.158 kb on - strand, within MPMX20_02767 at 2923.242 kb on + strand, within MPMX20_02767 at 2923.268 kb on - strand at 2923.331 kb on - strand at 2923.407 kb on - strand at 2923.447 kb on - strand at 2923.447 kb on - strand at 2923.471 kb on + strand, within MPMX20_02768 at 2923.479 kb on - strand, within MPMX20_02768 at 2923.526 kb on + strand, within MPMX20_02768 at 2923.526 kb on + strand, within MPMX20_02768 at 2923.532 kb on - strand, within MPMX20_02768 at 2923.720 kb on - strand, within MPMX20_02768 at 2923.783 kb on - strand, within MPMX20_02768 at 2923.783 kb on - strand, within MPMX20_02768 at 2923.902 kb on - strand at 2923.928 kb on + strand at 2924.203 kb on - strand, within MPMX20_02769
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 2,921,778 + -1.6 2,921,778 + -0.8 2,921,893 - MPMX20_02766 0.20 -1.2 2,921,903 - MPMX20_02766 0.21 -2.0 2,922,050 - MPMX20_02766 0.36 -1.6 2,922,194 - MPMX20_02766 0.50 -1.6 2,922,335 + MPMX20_02766 0.64 -0.8 2,922,355 - MPMX20_02766 0.66 -1.2 2,922,389 - MPMX20_02766 0.70 -0.2 2,922,389 - MPMX20_02766 0.70 -2.2 2,922,389 - MPMX20_02766 0.70 -0.3 2,922,391 + MPMX20_02766 0.70 -0.4 2,922,440 - MPMX20_02766 0.75 -2.6 2,922,458 - MPMX20_02766 0.76 -2.2 2,922,491 + MPMX20_02766 0.80 -2.4 2,922,626 - -0.3 2,922,881 + MPMX20_02767 0.29 +3.9 2,922,892 + MPMX20_02767 0.31 -1.7 2,922,900 - MPMX20_02767 0.32 -1.5 2,922,916 + MPMX20_02767 0.34 -2.5 2,922,916 + MPMX20_02767 0.34 -3.9 2,922,979 + MPMX20_02767 0.45 -2.1 2,922,987 - MPMX20_02767 0.46 -0.7 2,923,001 - MPMX20_02767 0.48 -0.3 2,923,034 - MPMX20_02767 0.54 -0.3 2,923,158 - MPMX20_02767 0.74 -1.2 2,923,242 + MPMX20_02767 0.88 -2.3 2,923,268 - -3.2 2,923,331 - +0.7 2,923,407 - -1.6 2,923,447 - -1.7 2,923,447 - -0.7 2,923,471 + MPMX20_02768 0.14 -2.4 2,923,479 - MPMX20_02768 0.16 -3.4 2,923,526 + MPMX20_02768 0.25 -0.8 2,923,526 + MPMX20_02768 0.25 -2.0 2,923,532 - MPMX20_02768 0.26 +0.5 2,923,720 - MPMX20_02768 0.62 -0.3 2,923,783 - MPMX20_02768 0.74 -1.5 2,923,783 - MPMX20_02768 0.74 -1.0 2,923,902 - -2.0 2,923,928 + -0.3 2,924,203 - MPMX20_02769 0.34 -0.8
Or see this region's nucleotide sequence