Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02700 and MPMX20_02701 are separated by 67 nucleotides MPMX20_02701 and MPMX20_02702 are separated by 201 nucleotides
MPMX20_02700: MPMX20_02700 - hypothetical protein, at 2,854,622 to 2,856,154
_02700
MPMX20_02701: MPMX20_02701 - Fatty acid metabolism regulator protein, at 2,856,222 to 2,856,941
_02701
MPMX20_02702: MPMX20_02702 - Na(+)/H(+) antiporter NhaB, at 2,857,143 to 2,858,681
_02702
Position (kb)
2856
2857 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2855.240 kb on - strand, within MPMX20_02700 at 2855.246 kb on + strand, within MPMX20_02700 at 2855.328 kb on + strand, within MPMX20_02700 at 2855.363 kb on - strand, within MPMX20_02700 at 2855.385 kb on + strand, within MPMX20_02700 at 2855.388 kb on - strand, within MPMX20_02700 at 2855.393 kb on - strand, within MPMX20_02700 at 2855.393 kb on - strand, within MPMX20_02700 at 2855.488 kb on + strand, within MPMX20_02700 at 2855.528 kb on - strand, within MPMX20_02700 at 2855.578 kb on + strand, within MPMX20_02700 at 2855.588 kb on + strand, within MPMX20_02700 at 2855.588 kb on + strand, within MPMX20_02700 at 2855.596 kb on - strand, within MPMX20_02700 at 2855.606 kb on - strand, within MPMX20_02700 at 2855.613 kb on + strand, within MPMX20_02700 at 2855.634 kb on + strand, within MPMX20_02700 at 2855.642 kb on - strand, within MPMX20_02700 at 2855.714 kb on + strand, within MPMX20_02700 at 2855.747 kb on - strand, within MPMX20_02700 at 2855.789 kb on - strand, within MPMX20_02700 at 2855.817 kb on + strand, within MPMX20_02700 at 2855.839 kb on - strand, within MPMX20_02700 at 2855.906 kb on - strand, within MPMX20_02700 at 2855.933 kb on + strand, within MPMX20_02700 at 2855.951 kb on - strand, within MPMX20_02700 at 2855.990 kb on - strand, within MPMX20_02700 at 2856.007 kb on + strand at 2856.017 kb on - strand at 2856.017 kb on - strand at 2856.069 kb on + strand at 2856.077 kb on - strand at 2856.151 kb on + strand at 2856.162 kb on - strand at 2856.162 kb on - strand at 2856.197 kb on + strand at 2856.236 kb on - strand at 2856.318 kb on + strand, within MPMX20_02701 at 2856.545 kb on + strand, within MPMX20_02701 at 2856.550 kb on + strand, within MPMX20_02701 at 2856.555 kb on + strand, within MPMX20_02701 at 2856.572 kb on + strand, within MPMX20_02701 at 2856.574 kb on + strand, within MPMX20_02701 at 2856.739 kb on + strand, within MPMX20_02701 at 2856.975 kb on + strand at 2856.980 kb on + strand at 2857.000 kb on + strand at 2857.010 kb on + strand at 2857.078 kb on + strand at 2857.201 kb on + strand at 2857.201 kb on + strand at 2857.201 kb on + strand at 2857.209 kb on - strand at 2857.209 kb on - strand at 2857.209 kb on - strand at 2857.209 kb on - strand at 2857.223 kb on - strand at 2857.223 kb on - strand at 2857.231 kb on - strand at 2857.246 kb on + strand at 2857.254 kb on - strand at 2857.254 kb on - strand at 2857.290 kb on + strand at 2857.290 kb on + strand at 2857.302 kb on + strand, within MPMX20_02702 at 2857.302 kb on + strand, within MPMX20_02702 at 2857.314 kb on + strand, within MPMX20_02702 at 2857.327 kb on + strand, within MPMX20_02702 at 2857.335 kb on - strand, within MPMX20_02702 at 2857.337 kb on + strand, within MPMX20_02702 at 2857.379 kb on + strand, within MPMX20_02702 at 2857.384 kb on + strand, within MPMX20_02702 at 2857.387 kb on - strand, within MPMX20_02702 at 2857.513 kb on - strand, within MPMX20_02702 at 2857.605 kb on - strand, within MPMX20_02702 at 2857.607 kb on - strand, within MPMX20_02702 at 2857.651 kb on + strand, within MPMX20_02702 at 2857.663 kb on + strand, within MPMX20_02702 at 2857.682 kb on + strand, within MPMX20_02702 at 2857.749 kb on - strand, within MPMX20_02702 at 2857.768 kb on - strand, within MPMX20_02702 at 2857.770 kb on + strand, within MPMX20_02702 at 2857.770 kb on + strand, within MPMX20_02702 at 2857.770 kb on + strand, within MPMX20_02702 at 2857.770 kb on + strand, within MPMX20_02702 at 2857.884 kb on + strand, within MPMX20_02702 at 2857.884 kb on + strand, within MPMX20_02702 at 2857.884 kb on + strand, within MPMX20_02702 at 2857.914 kb on - strand, within MPMX20_02702 at 2857.914 kb on - strand, within MPMX20_02702 at 2857.917 kb on - strand, within MPMX20_02702 at 2857.917 kb on - strand, within MPMX20_02702 at 2857.917 kb on - strand, within MPMX20_02702
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 2,855,240 - MPMX20_02700 0.40 +0.2 2,855,246 + MPMX20_02700 0.41 +0.6 2,855,328 + MPMX20_02700 0.46 +0.2 2,855,363 - MPMX20_02700 0.48 -1.2 2,855,385 + MPMX20_02700 0.50 -0.3 2,855,388 - MPMX20_02700 0.50 +3.0 2,855,393 - MPMX20_02700 0.50 -1.2 2,855,393 - MPMX20_02700 0.50 +1.3 2,855,488 + MPMX20_02700 0.56 -0.2 2,855,528 - MPMX20_02700 0.59 -0.2 2,855,578 + MPMX20_02700 0.62 +0.5 2,855,588 + MPMX20_02700 0.63 +0.9 2,855,588 + MPMX20_02700 0.63 -0.1 2,855,596 - MPMX20_02700 0.64 +1.7 2,855,606 - MPMX20_02700 0.64 +0.6 2,855,613 + MPMX20_02700 0.65 +0.6 2,855,634 + MPMX20_02700 0.66 -0.3 2,855,642 - MPMX20_02700 0.67 -2.8 2,855,714 + MPMX20_02700 0.71 +2.3 2,855,747 - MPMX20_02700 0.73 +1.9 2,855,789 - MPMX20_02700 0.76 -0.9 2,855,817 + MPMX20_02700 0.78 +0.4 2,855,839 - MPMX20_02700 0.79 +0.3 2,855,906 - MPMX20_02700 0.84 +0.6 2,855,933 + MPMX20_02700 0.86 -0.3 2,855,951 - MPMX20_02700 0.87 +0.3 2,855,990 - MPMX20_02700 0.89 +0.6 2,856,007 + +0.5 2,856,017 - -0.8 2,856,017 - +0.6 2,856,069 + +0.9 2,856,077 - +0.4 2,856,151 + -0.7 2,856,162 - -0.2 2,856,162 - +1.2 2,856,197 + -0.6 2,856,236 - +0.9 2,856,318 + MPMX20_02701 0.13 -1.2 2,856,545 + MPMX20_02701 0.45 +0.3 2,856,550 + MPMX20_02701 0.46 -1.9 2,856,555 + MPMX20_02701 0.46 -1.4 2,856,572 + MPMX20_02701 0.49 +0.1 2,856,574 + MPMX20_02701 0.49 -1.4 2,856,739 + MPMX20_02701 0.72 -1.7 2,856,975 + -2.0 2,856,980 + -0.6 2,857,000 + -0.4 2,857,010 + +0.2 2,857,078 + -0.3 2,857,201 + +0.3 2,857,201 + +0.5 2,857,201 + +0.5 2,857,209 - +0.9 2,857,209 - -1.1 2,857,209 - -0.5 2,857,209 - -0.7 2,857,223 - +0.6 2,857,223 - -0.8 2,857,231 - +0.8 2,857,246 + -0.9 2,857,254 - -0.0 2,857,254 - -0.5 2,857,290 + -0.7 2,857,290 + +1.9 2,857,302 + MPMX20_02702 0.10 +1.0 2,857,302 + MPMX20_02702 0.10 +0.7 2,857,314 + MPMX20_02702 0.11 -0.3 2,857,327 + MPMX20_02702 0.12 +0.4 2,857,335 - MPMX20_02702 0.12 +0.1 2,857,337 + MPMX20_02702 0.13 +0.6 2,857,379 + MPMX20_02702 0.15 -0.9 2,857,384 + MPMX20_02702 0.16 -0.0 2,857,387 - MPMX20_02702 0.16 +0.3 2,857,513 - MPMX20_02702 0.24 -0.0 2,857,605 - MPMX20_02702 0.30 -0.7 2,857,607 - MPMX20_02702 0.30 +0.8 2,857,651 + MPMX20_02702 0.33 +0.0 2,857,663 + MPMX20_02702 0.34 +1.4 2,857,682 + MPMX20_02702 0.35 +0.2 2,857,749 - MPMX20_02702 0.39 +1.5 2,857,768 - MPMX20_02702 0.41 -0.9 2,857,770 + MPMX20_02702 0.41 -2.0 2,857,770 + MPMX20_02702 0.41 -0.4 2,857,770 + MPMX20_02702 0.41 -1.4 2,857,770 + MPMX20_02702 0.41 -0.4 2,857,884 + MPMX20_02702 0.48 +1.1 2,857,884 + MPMX20_02702 0.48 -0.2 2,857,884 + MPMX20_02702 0.48 -1.6 2,857,914 - MPMX20_02702 0.50 +0.5 2,857,914 - MPMX20_02702 0.50 -1.3 2,857,917 - MPMX20_02702 0.50 -3.1 2,857,917 - MPMX20_02702 0.50 +0.5 2,857,917 - MPMX20_02702 0.50 -2.5
Or see this region's nucleotide sequence