Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02590 and MPMX20_02591 are separated by 639 nucleotides MPMX20_02591 and MPMX20_02592 are separated by 200 nucleotides
MPMX20_02590: MPMX20_02590 - Thymidine kinase, at 2,728,395 to 2,728,919
_02590
MPMX20_02591: MPMX20_02591 - DNA-binding protein H-NS, at 2,729,559 to 2,729,972
_02591
MPMX20_02592: MPMX20_02592 - UTP--glucose-1-phosphate uridylyltransferase, at 2,730,173 to 2,731,081
_02592
Position (kb)
2729
2730 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2728.565 kb on - strand, within MPMX20_02590 at 2728.567 kb on - strand, within MPMX20_02590 at 2728.590 kb on - strand, within MPMX20_02590 at 2728.590 kb on - strand, within MPMX20_02590 at 2728.598 kb on + strand, within MPMX20_02590 at 2728.615 kb on + strand, within MPMX20_02590 at 2728.615 kb on + strand, within MPMX20_02590 at 2728.615 kb on + strand, within MPMX20_02590 at 2728.615 kb on + strand, within MPMX20_02590 at 2728.615 kb on + strand, within MPMX20_02590 at 2728.615 kb on + strand, within MPMX20_02590 at 2728.615 kb on + strand, within MPMX20_02590 at 2728.623 kb on - strand, within MPMX20_02590 at 2728.623 kb on - strand, within MPMX20_02590 at 2728.623 kb on - strand, within MPMX20_02590 at 2728.623 kb on - strand, within MPMX20_02590 at 2728.623 kb on - strand, within MPMX20_02590 at 2728.659 kb on + strand, within MPMX20_02590 at 2728.659 kb on + strand, within MPMX20_02590 at 2728.659 kb on + strand, within MPMX20_02590 at 2728.664 kb on + strand, within MPMX20_02590 at 2728.664 kb on + strand, within MPMX20_02590 at 2728.666 kb on + strand, within MPMX20_02590 at 2728.671 kb on + strand, within MPMX20_02590 at 2728.671 kb on + strand, within MPMX20_02590 at 2728.672 kb on - strand, within MPMX20_02590 at 2728.672 kb on - strand, within MPMX20_02590 at 2728.674 kb on - strand, within MPMX20_02590 at 2728.674 kb on - strand, within MPMX20_02590 at 2728.679 kb on - strand, within MPMX20_02590 at 2728.681 kb on + strand, within MPMX20_02590 at 2728.712 kb on - strand, within MPMX20_02590 at 2728.742 kb on + strand, within MPMX20_02590 at 2728.752 kb on + strand, within MPMX20_02590 at 2728.760 kb on - strand, within MPMX20_02590 at 2728.760 kb on - strand, within MPMX20_02590 at 2728.760 kb on - strand, within MPMX20_02590 at 2728.772 kb on + strand, within MPMX20_02590 at 2728.779 kb on + strand, within MPMX20_02590 at 2728.779 kb on + strand, within MPMX20_02590 at 2728.789 kb on + strand, within MPMX20_02590 at 2728.794 kb on + strand, within MPMX20_02590 at 2728.794 kb on + strand, within MPMX20_02590 at 2728.797 kb on - strand, within MPMX20_02590 at 2728.798 kb on + strand, within MPMX20_02590 at 2728.798 kb on + strand, within MPMX20_02590 at 2728.798 kb on + strand, within MPMX20_02590 at 2728.798 kb on + strand, within MPMX20_02590 at 2728.806 kb on - strand, within MPMX20_02590 at 2728.819 kb on + strand, within MPMX20_02590 at 2728.820 kb on + strand, within MPMX20_02590 at 2728.829 kb on + strand, within MPMX20_02590 at 2728.837 kb on + strand, within MPMX20_02590 at 2728.837 kb on - strand, within MPMX20_02590 at 2728.847 kb on + strand, within MPMX20_02590 at 2728.863 kb on + strand, within MPMX20_02590 at 2728.863 kb on + strand, within MPMX20_02590 at 2728.863 kb on + strand, within MPMX20_02590 at 2728.863 kb on + strand, within MPMX20_02590 at 2728.863 kb on + strand, within MPMX20_02590 at 2728.863 kb on + strand, within MPMX20_02590 at 2728.868 kb on + strand at 2728.871 kb on - strand at 2728.871 kb on - strand at 2728.873 kb on + strand at 2728.873 kb on + strand at 2728.873 kb on + strand at 2728.873 kb on + strand at 2728.873 kb on + strand at 2728.874 kb on + strand at 2728.874 kb on + strand at 2728.874 kb on + strand at 2728.876 kb on - strand at 2728.890 kb on + strand at 2728.907 kb on + strand at 2728.909 kb on + strand at 2728.915 kb on - strand at 2728.917 kb on + strand at 2728.917 kb on + strand at 2728.919 kb on - strand at 2728.925 kb on - strand at 2728.925 kb on - strand at 2728.944 kb on + strand at 2728.945 kb on + strand at 2728.945 kb on + strand at 2728.950 kb on + strand at 2728.952 kb on - strand at 2728.953 kb on - strand at 2729.008 kb on - strand at 2729.020 kb on + strand at 2729.020 kb on + strand at 2729.020 kb on + strand at 2729.025 kb on + strand at 2729.028 kb on - strand at 2729.032 kb on + strand at 2729.088 kb on - strand at 2729.088 kb on - strand at 2729.090 kb on + strand at 2729.095 kb on - strand at 2729.097 kb on + strand at 2729.097 kb on - strand at 2729.098 kb on - strand at 2729.099 kb on + strand at 2729.099 kb on + strand at 2729.099 kb on - strand at 2729.101 kb on - strand at 2729.104 kb on + strand at 2729.104 kb on + strand at 2729.105 kb on - strand at 2729.107 kb on - strand at 2729.107 kb on - strand at 2729.107 kb on - strand at 2729.107 kb on - strand at 2729.107 kb on - strand at 2729.108 kb on + strand at 2729.112 kb on - strand at 2729.116 kb on + strand at 2729.117 kb on - strand at 2729.124 kb on - strand at 2729.162 kb on + strand at 2729.167 kb on + strand at 2729.167 kb on + strand at 2729.178 kb on + strand at 2729.184 kb on + strand at 2729.186 kb on + strand at 2729.186 kb on + strand at 2729.186 kb on + strand at 2729.186 kb on + strand at 2729.186 kb on + strand at 2729.186 kb on + strand at 2729.186 kb on + strand at 2729.186 kb on + strand at 2729.186 kb on + strand at 2729.186 kb on - strand at 2729.193 kb on + strand at 2729.194 kb on - strand at 2729.194 kb on - strand at 2729.194 kb on - strand at 2729.194 kb on - strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.204 kb on + strand at 2729.204 kb on + strand at 2729.211 kb on - strand at 2729.262 kb on + strand at 2729.273 kb on + strand at 2729.273 kb on + strand at 2729.273 kb on + strand at 2729.273 kb on + strand at 2729.275 kb on + strand at 2729.281 kb on - strand at 2729.282 kb on + strand at 2729.283 kb on + strand at 2729.283 kb on + strand at 2729.283 kb on + strand at 2729.283 kb on + strand at 2729.283 kb on + strand at 2729.283 kb on + strand at 2729.283 kb on + strand at 2729.283 kb on + strand at 2729.283 kb on + strand at 2729.290 kb on - strand at 2729.290 kb on - strand at 2729.291 kb on - strand at 2729.291 kb on - strand at 2729.372 kb on - strand at 2729.377 kb on - strand at 2729.378 kb on - strand at 2729.378 kb on - strand at 2729.395 kb on + strand at 2729.483 kb on - strand at 2729.491 kb on - strand at 2729.510 kb on + strand at 2729.854 kb on + strand, within MPMX20_02591 at 2729.854 kb on + strand, within MPMX20_02591 at 2729.884 kb on + strand, within MPMX20_02591 at 2729.896 kb on + strand, within MPMX20_02591 at 2729.896 kb on + strand, within MPMX20_02591 at 2729.896 kb on + strand, within MPMX20_02591 at 2729.896 kb on + strand, within MPMX20_02591 at 2729.896 kb on + strand, within MPMX20_02591 at 2729.896 kb on + strand, within MPMX20_02591 at 2729.896 kb on + strand, within MPMX20_02591 at 2729.896 kb on + strand, within MPMX20_02591 at 2729.902 kb on + strand, within MPMX20_02591 at 2729.902 kb on + strand, within MPMX20_02591 at 2729.902 kb on + strand, within MPMX20_02591 at 2729.902 kb on + strand, within MPMX20_02591 at 2729.902 kb on + strand, within MPMX20_02591 at 2729.902 kb on + strand, within MPMX20_02591 at 2729.902 kb on + strand, within MPMX20_02591 at 2729.902 kb on + strand, within MPMX20_02591 at 2729.938 kb on + strand at 2729.938 kb on + strand at 2729.938 kb on + strand at 2729.948 kb on + strand at 2729.966 kb on + strand at 2729.974 kb on - strand at 2729.991 kb on + strand at 2730.037 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.053 kb on + strand at 2730.061 kb on - strand at 2730.061 kb on - strand at 2730.105 kb on - strand at 2730.111 kb on + strand at 2730.135 kb on + strand at 2730.142 kb on - strand at 2730.142 kb on - strand at 2730.142 kb on - strand at 2730.142 kb on - strand at 2730.143 kb on - strand at 2730.143 kb on - strand at 2730.147 kb on - strand at 2730.150 kb on + strand at 2730.150 kb on + strand at 2730.155 kb on + strand at 2730.160 kb on + strand at 2730.163 kb on - strand at 2730.163 kb on - strand at 2730.163 kb on - strand at 2730.163 kb on - strand at 2730.168 kb on - strand at 2730.168 kb on - strand at 2730.202 kb on - strand at 2730.204 kb on - strand at 2730.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 2,728,565 - MPMX20_02590 0.32 -0.8 2,728,567 - MPMX20_02590 0.33 -0.5 2,728,590 - MPMX20_02590 0.37 -0.8 2,728,590 - MPMX20_02590 0.37 -0.1 2,728,598 + MPMX20_02590 0.39 -0.4 2,728,615 + MPMX20_02590 0.42 -0.2 2,728,615 + MPMX20_02590 0.42 +0.7 2,728,615 + MPMX20_02590 0.42 -0.2 2,728,615 + MPMX20_02590 0.42 +0.7 2,728,615 + MPMX20_02590 0.42 +0.6 2,728,615 + MPMX20_02590 0.42 -0.3 2,728,615 + MPMX20_02590 0.42 -0.4 2,728,623 - MPMX20_02590 0.43 -1.0 2,728,623 - MPMX20_02590 0.43 +0.2 2,728,623 - MPMX20_02590 0.43 -0.4 2,728,623 - MPMX20_02590 0.43 -0.1 2,728,623 - MPMX20_02590 0.43 -0.3 2,728,659 + MPMX20_02590 0.50 -1.1 2,728,659 + MPMX20_02590 0.50 -1.5 2,728,659 + MPMX20_02590 0.50 -0.5 2,728,664 + MPMX20_02590 0.51 +0.3 2,728,664 + MPMX20_02590 0.51 -1.4 2,728,666 + MPMX20_02590 0.52 +0.2 2,728,671 + MPMX20_02590 0.53 +1.1 2,728,671 + MPMX20_02590 0.53 +0.4 2,728,672 - MPMX20_02590 0.53 -1.8 2,728,672 - MPMX20_02590 0.53 -0.5 2,728,674 - MPMX20_02590 0.53 +0.0 2,728,674 - MPMX20_02590 0.53 -2.7 2,728,679 - MPMX20_02590 0.54 -0.4 2,728,681 + MPMX20_02590 0.54 +1.6 2,728,712 - MPMX20_02590 0.60 -1.5 2,728,742 + MPMX20_02590 0.66 +0.9 2,728,752 + MPMX20_02590 0.68 +1.1 2,728,760 - MPMX20_02590 0.70 -0.6 2,728,760 - MPMX20_02590 0.70 -0.3 2,728,760 - MPMX20_02590 0.70 -0.9 2,728,772 + MPMX20_02590 0.72 +0.9 2,728,779 + MPMX20_02590 0.73 +0.1 2,728,779 + MPMX20_02590 0.73 -0.1 2,728,789 + MPMX20_02590 0.75 -1.6 2,728,794 + MPMX20_02590 0.76 +0.3 2,728,794 + MPMX20_02590 0.76 -1.5 2,728,797 - MPMX20_02590 0.77 +0.1 2,728,798 + MPMX20_02590 0.77 +0.1 2,728,798 + MPMX20_02590 0.77 +0.1 2,728,798 + MPMX20_02590 0.77 +0.3 2,728,798 + MPMX20_02590 0.77 +0.1 2,728,806 - MPMX20_02590 0.78 +0.4 2,728,819 + MPMX20_02590 0.81 -0.3 2,728,820 + MPMX20_02590 0.81 -0.9 2,728,829 + MPMX20_02590 0.83 +0.8 2,728,837 + MPMX20_02590 0.84 -0.2 2,728,837 - MPMX20_02590 0.84 -1.8 2,728,847 + MPMX20_02590 0.86 -1.1 2,728,863 + MPMX20_02590 0.89 -0.7 2,728,863 + MPMX20_02590 0.89 -0.4 2,728,863 + MPMX20_02590 0.89 -0.9 2,728,863 + MPMX20_02590 0.89 +0.1 2,728,863 + MPMX20_02590 0.89 -1.2 2,728,863 + MPMX20_02590 0.89 -1.5 2,728,868 + -0.4 2,728,871 - -0.5 2,728,871 - -1.1 2,728,873 + -0.6 2,728,873 + +0.1 2,728,873 + -0.4 2,728,873 + -1.9 2,728,873 + -1.1 2,728,874 + -1.5 2,728,874 + -1.7 2,728,874 + +0.1 2,728,876 - -2.0 2,728,890 + -0.9 2,728,907 + -1.1 2,728,909 + -0.7 2,728,915 - -0.0 2,728,917 + +0.9 2,728,917 + +1.3 2,728,919 - -0.1 2,728,925 - -2.2 2,728,925 - -0.7 2,728,944 + -3.7 2,728,945 + -0.6 2,728,945 + +0.7 2,728,950 + +0.7 2,728,952 - +0.0 2,728,953 - -2.3 2,729,008 - +0.6 2,729,020 + -1.8 2,729,020 + -0.5 2,729,020 + +1.1 2,729,025 + +0.1 2,729,028 - -0.3 2,729,032 + +0.4 2,729,088 - +0.3 2,729,088 - -3.0 2,729,090 + +0.2 2,729,095 - -0.1 2,729,097 + -2.2 2,729,097 - -0.3 2,729,098 - +0.5 2,729,099 + -0.4 2,729,099 + +0.9 2,729,099 - +0.6 2,729,101 - -1.4 2,729,104 + +1.0 2,729,104 + +1.9 2,729,105 - +0.9 2,729,107 - -2.1 2,729,107 - -1.1 2,729,107 - -1.8 2,729,107 - -1.9 2,729,107 - -1.7 2,729,108 + -0.9 2,729,112 - -0.2 2,729,116 + +2.2 2,729,117 - +1.2 2,729,124 - -2.2 2,729,162 + -0.8 2,729,167 + -0.9 2,729,167 + +0.9 2,729,178 + +0.9 2,729,184 + +0.1 2,729,186 + +0.3 2,729,186 + -0.1 2,729,186 + -0.8 2,729,186 + +0.5 2,729,186 + -0.1 2,729,186 + +1.8 2,729,186 + +0.4 2,729,186 + -0.0 2,729,186 + +0.2 2,729,186 - +1.8 2,729,193 + +0.0 2,729,194 - +1.5 2,729,194 - -0.1 2,729,194 - -1.1 2,729,194 - +4.5 2,729,203 + -0.9 2,729,203 + -0.3 2,729,203 + -1.1 2,729,203 + -2.1 2,729,203 + -1.1 2,729,203 + -2.3 2,729,203 + -0.0 2,729,203 + -0.9 2,729,203 + -0.9 2,729,203 + -1.0 2,729,203 + -1.4 2,729,204 + -1.1 2,729,204 + -0.2 2,729,211 - +0.9 2,729,262 + -1.7 2,729,273 + +0.5 2,729,273 + -1.5 2,729,273 + +0.3 2,729,273 + +0.3 2,729,275 + -0.0 2,729,281 - +0.3 2,729,282 + +0.9 2,729,283 + -2.1 2,729,283 + -0.7 2,729,283 + +2.2 2,729,283 + +0.2 2,729,283 + +0.9 2,729,283 + +0.2 2,729,283 + -0.7 2,729,283 + +1.9 2,729,283 + +0.1 2,729,290 - +1.1 2,729,290 - +2.3 2,729,291 - +1.5 2,729,291 - -2.8 2,729,372 - +2.1 2,729,377 - +1.4 2,729,378 - +0.3 2,729,378 - -0.4 2,729,395 + +0.9 2,729,483 - -0.8 2,729,491 - -0.6 2,729,510 + -0.5 2,729,854 + MPMX20_02591 0.71 -1.9 2,729,854 + MPMX20_02591 0.71 -1.1 2,729,884 + MPMX20_02591 0.79 -1.5 2,729,896 + MPMX20_02591 0.81 -3.3 2,729,896 + MPMX20_02591 0.81 -2.8 2,729,896 + MPMX20_02591 0.81 -2.2 2,729,896 + MPMX20_02591 0.81 -3.1 2,729,896 + MPMX20_02591 0.81 -2.8 2,729,896 + MPMX20_02591 0.81 -1.2 2,729,896 + MPMX20_02591 0.81 -1.3 2,729,896 + MPMX20_02591 0.81 -2.4 2,729,902 + MPMX20_02591 0.83 -3.8 2,729,902 + MPMX20_02591 0.83 -2.4 2,729,902 + MPMX20_02591 0.83 -1.2 2,729,902 + MPMX20_02591 0.83 -3.7 2,729,902 + MPMX20_02591 0.83 -1.8 2,729,902 + MPMX20_02591 0.83 -3.3 2,729,902 + MPMX20_02591 0.83 -2.5 2,729,902 + MPMX20_02591 0.83 -1.2 2,729,938 + -4.6 2,729,938 + -3.2 2,729,938 + -2.3 2,729,948 + -0.5 2,729,966 + -0.3 2,729,974 - -0.1 2,729,991 + -1.0 2,730,037 + -0.4 2,730,041 + -0.9 2,730,041 + +0.2 2,730,041 + -0.3 2,730,041 + -0.9 2,730,041 + -0.1 2,730,041 + -0.5 2,730,041 + -0.6 2,730,041 + -0.3 2,730,041 + -1.2 2,730,041 + -1.5 2,730,041 + +1.1 2,730,041 + +2.7 2,730,041 + -0.7 2,730,041 + -0.2 2,730,041 + -0.8 2,730,041 + -1.4 2,730,041 + -0.2 2,730,041 + -0.0 2,730,041 + +0.5 2,730,049 - -0.0 2,730,049 - -0.4 2,730,049 - -0.2 2,730,049 - -1.6 2,730,049 - +1.9 2,730,049 - -0.8 2,730,049 - +1.7 2,730,049 - +0.8 2,730,049 - +0.3 2,730,049 - -1.1 2,730,049 - +0.7 2,730,049 - -0.5 2,730,049 - -0.3 2,730,049 - +1.7 2,730,049 - -0.4 2,730,049 - -1.1 2,730,049 - -0.5 2,730,049 - +1.2 2,730,049 - -0.1 2,730,049 - -0.5 2,730,049 - +1.9 2,730,049 - +1.2 2,730,049 - -2.4 2,730,049 - +0.3 2,730,053 + +1.3 2,730,061 - -2.7 2,730,061 - +1.2 2,730,105 - -0.5 2,730,111 + -1.4 2,730,135 + -0.1 2,730,142 - -0.0 2,730,142 - +1.1 2,730,142 - +0.8 2,730,142 - -0.3 2,730,143 - +0.1 2,730,143 - -0.3 2,730,147 - -2.0 2,730,150 + +1.9 2,730,150 + +0.6 2,730,155 + -0.7 2,730,160 + +0.8 2,730,163 - -0.6 2,730,163 - -0.7 2,730,163 - -0.6 2,730,163 - +1.1 2,730,168 - +0.4 2,730,168 - -0.8 2,730,202 - +1.6 2,730,204 - -2.8 2,730,204 - -0.2
Or see this region's nucleotide sequence