Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02410 and MPMX20_02411 are separated by 65 nucleotides MPMX20_02411 and MPMX20_02412 are separated by 171 nucleotides MPMX20_02412 and MPMX20_02413 overlap by 4 nucleotides
MPMX20_02410: MPMX20_02410 - NADPH-dependent curcumin reductase, at 2,544,655 to 2,545,695
_02410
MPMX20_02411: MPMX20_02411 - hypothetical protein, at 2,545,761 to 2,546,315
_02411
MPMX20_02412: MPMX20_02412 - L-amino acid N-acyltransferase MnaT, at 2,546,487 to 2,547,005
_02412
MPMX20_02413: MPMX20_02413 - Inner membrane protein YdcZ, at 2,547,002 to 2,547,451
_02413
Position (kb)
2545
2546
2547 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.791 kb on - strand, within MPMX20_02410 at 2544.804 kb on - strand, within MPMX20_02410 at 2544.814 kb on - strand, within MPMX20_02410 at 2544.814 kb on - strand, within MPMX20_02410 at 2544.814 kb on - strand, within MPMX20_02410 at 2544.814 kb on - strand, within MPMX20_02410 at 2544.814 kb on - strand, within MPMX20_02410 at 2544.838 kb on - strand, within MPMX20_02410 at 2544.838 kb on - strand, within MPMX20_02410 at 2544.838 kb on - strand, within MPMX20_02410 at 2544.838 kb on - strand, within MPMX20_02410 at 2544.838 kb on - strand, within MPMX20_02410 at 2544.838 kb on - strand, within MPMX20_02410 at 2544.838 kb on - strand, within MPMX20_02410 at 2544.898 kb on + strand, within MPMX20_02410 at 2544.946 kb on + strand, within MPMX20_02410 at 2544.946 kb on + strand, within MPMX20_02410 at 2544.949 kb on - strand, within MPMX20_02410 at 2544.949 kb on - strand, within MPMX20_02410 at 2544.988 kb on + strand, within MPMX20_02410 at 2544.988 kb on + strand, within MPMX20_02410 at 2544.988 kb on + strand, within MPMX20_02410 at 2544.996 kb on - strand, within MPMX20_02410 at 2544.996 kb on - strand, within MPMX20_02410 at 2544.996 kb on - strand, within MPMX20_02410 at 2545.092 kb on + strand, within MPMX20_02410 at 2545.104 kb on + strand, within MPMX20_02410 at 2545.104 kb on + strand, within MPMX20_02410 at 2545.112 kb on - strand, within MPMX20_02410 at 2545.112 kb on - strand, within MPMX20_02410 at 2545.112 kb on - strand, within MPMX20_02410 at 2545.112 kb on - strand, within MPMX20_02410 at 2545.210 kb on + strand, within MPMX20_02410 at 2545.250 kb on + strand, within MPMX20_02410 at 2545.258 kb on - strand, within MPMX20_02410 at 2545.258 kb on - strand, within MPMX20_02410 at 2545.258 kb on - strand, within MPMX20_02410 at 2545.258 kb on - strand, within MPMX20_02410 at 2545.258 kb on - strand, within MPMX20_02410 at 2545.258 kb on - strand, within MPMX20_02410 at 2545.397 kb on + strand, within MPMX20_02410 at 2545.415 kb on - strand, within MPMX20_02410 at 2545.436 kb on - strand, within MPMX20_02410 at 2545.437 kb on - strand, within MPMX20_02410 at 2545.446 kb on + strand, within MPMX20_02410 at 2545.454 kb on - strand, within MPMX20_02410 at 2545.469 kb on - strand, within MPMX20_02410 at 2545.471 kb on + strand, within MPMX20_02410 at 2545.520 kb on - strand, within MPMX20_02410 at 2545.590 kb on - strand, within MPMX20_02410 at 2545.664 kb on - strand at 2545.744 kb on + strand at 2545.744 kb on + strand at 2545.801 kb on - strand at 2545.804 kb on - strand at 2545.844 kb on + strand, within MPMX20_02411 at 2545.850 kb on + strand, within MPMX20_02411 at 2545.893 kb on - strand, within MPMX20_02411 at 2546.043 kb on + strand, within MPMX20_02411 at 2546.045 kb on + strand, within MPMX20_02411 at 2546.104 kb on - strand, within MPMX20_02411 at 2546.129 kb on + strand, within MPMX20_02411 at 2546.214 kb on - strand, within MPMX20_02411 at 2546.230 kb on + strand, within MPMX20_02411 at 2546.486 kb on - strand at 2546.504 kb on + strand at 2546.534 kb on + strand at 2546.543 kb on - strand, within MPMX20_02412 at 2546.550 kb on + strand, within MPMX20_02412 at 2546.555 kb on + strand, within MPMX20_02412 at 2546.558 kb on - strand, within MPMX20_02412 at 2546.611 kb on + strand, within MPMX20_02412 at 2546.611 kb on + strand, within MPMX20_02412 at 2546.611 kb on + strand, within MPMX20_02412 at 2546.638 kb on + strand, within MPMX20_02412 at 2546.638 kb on + strand, within MPMX20_02412 at 2546.643 kb on + strand, within MPMX20_02412 at 2546.645 kb on + strand, within MPMX20_02412 at 2546.646 kb on - strand, within MPMX20_02412 at 2546.651 kb on - strand, within MPMX20_02412 at 2546.704 kb on + strand, within MPMX20_02412 at 2546.728 kb on - strand, within MPMX20_02412 at 2546.733 kb on - strand, within MPMX20_02412 at 2546.762 kb on + strand, within MPMX20_02412 at 2546.762 kb on + strand, within MPMX20_02412 at 2546.769 kb on + strand, within MPMX20_02412 at 2546.777 kb on - strand, within MPMX20_02412 at 2546.806 kb on - strand, within MPMX20_02412 at 2546.866 kb on + strand, within MPMX20_02412 at 2546.866 kb on + strand, within MPMX20_02412 at 2546.874 kb on - strand, within MPMX20_02412 at 2546.899 kb on + strand, within MPMX20_02412 at 2546.946 kb on + strand, within MPMX20_02412 at 2546.954 kb on - strand at 2547.074 kb on - strand, within MPMX20_02413 at 2547.081 kb on + strand, within MPMX20_02413 at 2547.083 kb on + strand, within MPMX20_02413 at 2547.083 kb on + strand, within MPMX20_02413 at 2547.091 kb on - strand, within MPMX20_02413 at 2547.091 kb on - strand, within MPMX20_02413 at 2547.130 kb on + strand, within MPMX20_02413
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 2,544,767 - MPMX20_02410 0.11 -0.2 2,544,767 - MPMX20_02410 0.11 +0.7 2,544,767 - MPMX20_02410 0.11 +0.0 2,544,767 - MPMX20_02410 0.11 -0.7 2,544,767 - MPMX20_02410 0.11 +0.9 2,544,767 - MPMX20_02410 0.11 -1.0 2,544,767 - MPMX20_02410 0.11 -2.0 2,544,767 - MPMX20_02410 0.11 -1.1 2,544,767 - MPMX20_02410 0.11 -0.4 2,544,767 - MPMX20_02410 0.11 -1.5 2,544,791 - MPMX20_02410 0.13 +0.5 2,544,804 - MPMX20_02410 0.14 +0.3 2,544,814 - MPMX20_02410 0.15 -1.1 2,544,814 - MPMX20_02410 0.15 -0.6 2,544,814 - MPMX20_02410 0.15 -0.7 2,544,814 - MPMX20_02410 0.15 +0.1 2,544,814 - MPMX20_02410 0.15 +0.4 2,544,838 - MPMX20_02410 0.18 -0.3 2,544,838 - MPMX20_02410 0.18 -1.7 2,544,838 - MPMX20_02410 0.18 +0.1 2,544,838 - MPMX20_02410 0.18 +1.0 2,544,838 - MPMX20_02410 0.18 +0.0 2,544,838 - MPMX20_02410 0.18 +0.4 2,544,838 - MPMX20_02410 0.18 +0.3 2,544,898 + MPMX20_02410 0.23 -0.6 2,544,946 + MPMX20_02410 0.28 -0.6 2,544,946 + MPMX20_02410 0.28 -1.6 2,544,949 - MPMX20_02410 0.28 -2.2 2,544,949 - MPMX20_02410 0.28 +0.3 2,544,988 + MPMX20_02410 0.32 -2.0 2,544,988 + MPMX20_02410 0.32 -0.7 2,544,988 + MPMX20_02410 0.32 +0.8 2,544,996 - MPMX20_02410 0.33 +1.6 2,544,996 - MPMX20_02410 0.33 -0.7 2,544,996 - MPMX20_02410 0.33 -3.3 2,545,092 + MPMX20_02410 0.42 +1.4 2,545,104 + MPMX20_02410 0.43 +0.1 2,545,104 + MPMX20_02410 0.43 -0.4 2,545,112 - MPMX20_02410 0.44 -0.8 2,545,112 - MPMX20_02410 0.44 +0.2 2,545,112 - MPMX20_02410 0.44 +1.1 2,545,112 - MPMX20_02410 0.44 -0.2 2,545,210 + MPMX20_02410 0.53 -0.1 2,545,250 + MPMX20_02410 0.57 -0.0 2,545,258 - MPMX20_02410 0.58 -0.2 2,545,258 - MPMX20_02410 0.58 +0.0 2,545,258 - MPMX20_02410 0.58 -0.7 2,545,258 - MPMX20_02410 0.58 +0.9 2,545,258 - MPMX20_02410 0.58 +0.3 2,545,258 - MPMX20_02410 0.58 +0.1 2,545,397 + MPMX20_02410 0.71 -1.1 2,545,415 - MPMX20_02410 0.73 -0.5 2,545,436 - MPMX20_02410 0.75 -0.0 2,545,437 - MPMX20_02410 0.75 -2.7 2,545,446 + MPMX20_02410 0.76 -0.0 2,545,454 - MPMX20_02410 0.77 +0.4 2,545,469 - MPMX20_02410 0.78 -0.6 2,545,471 + MPMX20_02410 0.78 +0.3 2,545,520 - MPMX20_02410 0.83 +0.5 2,545,590 - MPMX20_02410 0.90 +0.1 2,545,664 - -1.2 2,545,744 + -0.3 2,545,744 + -1.8 2,545,801 - +1.2 2,545,804 - -0.6 2,545,844 + MPMX20_02411 0.15 -0.3 2,545,850 + MPMX20_02411 0.16 -0.6 2,545,893 - MPMX20_02411 0.24 -0.1 2,546,043 + MPMX20_02411 0.51 -0.3 2,546,045 + MPMX20_02411 0.51 +0.4 2,546,104 - MPMX20_02411 0.62 -2.0 2,546,129 + MPMX20_02411 0.66 +0.8 2,546,214 - MPMX20_02411 0.82 -0.7 2,546,230 + MPMX20_02411 0.85 -0.9 2,546,486 - -1.2 2,546,504 + +1.1 2,546,534 + -0.9 2,546,543 - MPMX20_02412 0.11 +0.3 2,546,550 + MPMX20_02412 0.12 -0.7 2,546,555 + MPMX20_02412 0.13 +0.3 2,546,558 - MPMX20_02412 0.14 -0.8 2,546,611 + MPMX20_02412 0.24 +0.5 2,546,611 + MPMX20_02412 0.24 -0.1 2,546,611 + MPMX20_02412 0.24 -0.0 2,546,638 + MPMX20_02412 0.29 -0.7 2,546,638 + MPMX20_02412 0.29 -0.7 2,546,643 + MPMX20_02412 0.30 +0.1 2,546,645 + MPMX20_02412 0.30 -0.2 2,546,646 - MPMX20_02412 0.31 +1.3 2,546,651 - MPMX20_02412 0.32 -0.1 2,546,704 + MPMX20_02412 0.42 +0.3 2,546,728 - MPMX20_02412 0.46 +0.1 2,546,733 - MPMX20_02412 0.47 -0.4 2,546,762 + MPMX20_02412 0.53 -0.0 2,546,762 + MPMX20_02412 0.53 -2.0 2,546,769 + MPMX20_02412 0.54 -0.8 2,546,777 - MPMX20_02412 0.56 -0.9 2,546,806 - MPMX20_02412 0.61 +0.4 2,546,866 + MPMX20_02412 0.73 -1.0 2,546,866 + MPMX20_02412 0.73 +0.8 2,546,874 - MPMX20_02412 0.75 -0.6 2,546,899 + MPMX20_02412 0.79 +0.2 2,546,946 + MPMX20_02412 0.88 +0.6 2,546,954 - -1.1 2,547,074 - MPMX20_02413 0.16 -0.6 2,547,081 + MPMX20_02413 0.18 +1.2 2,547,083 + MPMX20_02413 0.18 -0.1 2,547,083 + MPMX20_02413 0.18 -0.7 2,547,091 - MPMX20_02413 0.20 +1.0 2,547,091 - MPMX20_02413 0.20 +1.0 2,547,130 + MPMX20_02413 0.28 +0.1
Or see this region's nucleotide sequence