Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02392 and MPMX20_02393 are separated by 160 nucleotides MPMX20_02393 and MPMX20_02394 are separated by 43 nucleotides MPMX20_02394 and MPMX20_02395 are separated by 37 nucleotides MPMX20_02395 and MPMX20_02396 are separated by 39 nucleotides
MPMX20_02392: MPMX20_02392 - Elongation factor G, at 2,524,703 to 2,526,802
_02392
MPMX20_02393: MPMX20_02393 - hypothetical protein, at 2,526,963 to 2,527,262
_02393
MPMX20_02394: MPMX20_02394 - Tautomerase PptA, at 2,527,306 to 2,527,536
_02394
MPMX20_02395: MPMX20_02395 - Glutathione S-transferase GST-6.0, at 2,527,574 to 2,528,191
_02395
MPMX20_02396: MPMX20_02396 - hypothetical protein, at 2,528,231 to 2,529,118
_02396
Position (kb)
2526
2527
2528 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2526.078 kb on - strand, within MPMX20_02392 at 2526.106 kb on + strand, within MPMX20_02392 at 2526.162 kb on + strand, within MPMX20_02392 at 2526.162 kb on + strand, within MPMX20_02392 at 2526.187 kb on + strand, within MPMX20_02392 at 2526.200 kb on + strand, within MPMX20_02392 at 2526.202 kb on - strand, within MPMX20_02392 at 2526.202 kb on - strand, within MPMX20_02392 at 2526.214 kb on - strand, within MPMX20_02392 at 2526.219 kb on - strand, within MPMX20_02392 at 2526.219 kb on - strand, within MPMX20_02392 at 2526.274 kb on + strand, within MPMX20_02392 at 2526.282 kb on - strand, within MPMX20_02392 at 2526.333 kb on + strand, within MPMX20_02392 at 2526.361 kb on - strand, within MPMX20_02392 at 2526.415 kb on + strand, within MPMX20_02392 at 2526.429 kb on + strand, within MPMX20_02392 at 2526.429 kb on + strand, within MPMX20_02392 at 2526.429 kb on + strand, within MPMX20_02392 at 2526.429 kb on + strand, within MPMX20_02392 at 2526.429 kb on + strand, within MPMX20_02392 at 2526.458 kb on - strand, within MPMX20_02392 at 2526.459 kb on + strand, within MPMX20_02392 at 2526.461 kb on + strand, within MPMX20_02392 at 2526.461 kb on + strand, within MPMX20_02392 at 2526.461 kb on + strand, within MPMX20_02392 at 2526.461 kb on + strand, within MPMX20_02392 at 2526.461 kb on + strand, within MPMX20_02392 at 2526.467 kb on + strand, within MPMX20_02392 at 2526.469 kb on - strand, within MPMX20_02392 at 2526.469 kb on - strand, within MPMX20_02392 at 2526.469 kb on - strand, within MPMX20_02392 at 2526.479 kb on + strand, within MPMX20_02392 at 2526.500 kb on - strand, within MPMX20_02392 at 2526.523 kb on - strand, within MPMX20_02392 at 2526.529 kb on + strand, within MPMX20_02392 at 2526.562 kb on + strand, within MPMX20_02392 at 2526.562 kb on + strand, within MPMX20_02392 at 2526.562 kb on + strand, within MPMX20_02392 at 2526.570 kb on - strand, within MPMX20_02392 at 2526.570 kb on - strand, within MPMX20_02392 at 2526.575 kb on + strand, within MPMX20_02392 at 2526.575 kb on + strand, within MPMX20_02392 at 2526.577 kb on - strand, within MPMX20_02392 at 2526.583 kb on - strand, within MPMX20_02392 at 2526.591 kb on + strand, within MPMX20_02392 at 2526.611 kb on + strand at 2526.612 kb on - strand at 2526.619 kb on - strand at 2526.640 kb on + strand at 2526.668 kb on + strand at 2526.676 kb on - strand at 2526.693 kb on - strand at 2526.718 kb on + strand at 2526.721 kb on + strand at 2526.726 kb on - strand at 2526.786 kb on + strand at 2526.823 kb on - strand at 2526.825 kb on - strand at 2526.825 kb on - strand at 2526.827 kb on + strand at 2526.830 kb on - strand at 2526.977 kb on + strand at 2526.985 kb on - strand at 2526.985 kb on - strand at 2527.076 kb on + strand, within MPMX20_02393 at 2527.084 kb on - strand, within MPMX20_02393 at 2527.303 kb on + strand at 2527.364 kb on + strand, within MPMX20_02394 at 2527.364 kb on + strand, within MPMX20_02394 at 2527.369 kb on + strand, within MPMX20_02394 at 2527.369 kb on + strand, within MPMX20_02394 at 2527.372 kb on - strand, within MPMX20_02394 at 2527.372 kb on - strand, within MPMX20_02394 at 2527.377 kb on - strand, within MPMX20_02394 at 2527.424 kb on + strand, within MPMX20_02394 at 2527.433 kb on - strand, within MPMX20_02394 at 2527.435 kb on + strand, within MPMX20_02394 at 2527.435 kb on + strand, within MPMX20_02394 at 2527.443 kb on - strand, within MPMX20_02394 at 2527.571 kb on - strand at 2527.593 kb on + strand at 2527.684 kb on + strand, within MPMX20_02395 at 2527.684 kb on + strand, within MPMX20_02395 at 2527.684 kb on + strand, within MPMX20_02395 at 2527.692 kb on - strand, within MPMX20_02395 at 2527.692 kb on - strand, within MPMX20_02395 at 2527.692 kb on - strand, within MPMX20_02395 at 2527.694 kb on - strand, within MPMX20_02395 at 2527.704 kb on - strand, within MPMX20_02395 at 2527.755 kb on + strand, within MPMX20_02395 at 2527.755 kb on + strand, within MPMX20_02395 at 2527.755 kb on + strand, within MPMX20_02395 at 2527.758 kb on - strand, within MPMX20_02395 at 2527.763 kb on - strand, within MPMX20_02395 at 2527.763 kb on - strand, within MPMX20_02395 at 2527.798 kb on + strand, within MPMX20_02395 at 2527.854 kb on - strand, within MPMX20_02395 at 2527.865 kb on + strand, within MPMX20_02395 at 2527.956 kb on + strand, within MPMX20_02395 at 2527.964 kb on + strand, within MPMX20_02395 at 2527.972 kb on - strand, within MPMX20_02395 at 2528.003 kb on + strand, within MPMX20_02395 at 2528.066 kb on - strand, within MPMX20_02395 at 2528.086 kb on + strand, within MPMX20_02395 at 2528.094 kb on - strand, within MPMX20_02395 at 2528.113 kb on + strand, within MPMX20_02395 at 2528.158 kb on + strand at 2528.227 kb on - strand at 2528.230 kb on + strand at 2528.242 kb on + strand at 2528.250 kb on - strand at 2528.261 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 2,526,078 - MPMX20_02392 0.65 +0.4 2,526,106 + MPMX20_02392 0.67 +0.3 2,526,162 + MPMX20_02392 0.69 +0.2 2,526,162 + MPMX20_02392 0.69 +0.0 2,526,187 + MPMX20_02392 0.71 +0.7 2,526,200 + MPMX20_02392 0.71 +1.7 2,526,202 - MPMX20_02392 0.71 +0.1 2,526,202 - MPMX20_02392 0.71 -0.9 2,526,214 - MPMX20_02392 0.72 -1.1 2,526,219 - MPMX20_02392 0.72 -1.5 2,526,219 - MPMX20_02392 0.72 -0.4 2,526,274 + MPMX20_02392 0.75 +0.5 2,526,282 - MPMX20_02392 0.75 +0.8 2,526,333 + MPMX20_02392 0.78 -1.3 2,526,361 - MPMX20_02392 0.79 +0.4 2,526,415 + MPMX20_02392 0.82 -0.4 2,526,429 + MPMX20_02392 0.82 -0.3 2,526,429 + MPMX20_02392 0.82 +0.4 2,526,429 + MPMX20_02392 0.82 -3.0 2,526,429 + MPMX20_02392 0.82 -1.0 2,526,429 + MPMX20_02392 0.82 -0.3 2,526,458 - MPMX20_02392 0.84 +1.6 2,526,459 + MPMX20_02392 0.84 -0.4 2,526,461 + MPMX20_02392 0.84 -0.8 2,526,461 + MPMX20_02392 0.84 -0.2 2,526,461 + MPMX20_02392 0.84 -0.4 2,526,461 + MPMX20_02392 0.84 +0.4 2,526,461 + MPMX20_02392 0.84 -0.3 2,526,467 + MPMX20_02392 0.84 -2.8 2,526,469 - MPMX20_02392 0.84 -0.1 2,526,469 - MPMX20_02392 0.84 -0.1 2,526,469 - MPMX20_02392 0.84 +0.0 2,526,479 + MPMX20_02392 0.85 -0.0 2,526,500 - MPMX20_02392 0.86 +0.3 2,526,523 - MPMX20_02392 0.87 -0.2 2,526,529 + MPMX20_02392 0.87 -0.3 2,526,562 + MPMX20_02392 0.89 +1.3 2,526,562 + MPMX20_02392 0.89 +0.2 2,526,562 + MPMX20_02392 0.89 -0.6 2,526,570 - MPMX20_02392 0.89 -1.1 2,526,570 - MPMX20_02392 0.89 +2.0 2,526,575 + MPMX20_02392 0.89 +1.1 2,526,575 + MPMX20_02392 0.89 +0.7 2,526,577 - MPMX20_02392 0.89 -1.1 2,526,583 - MPMX20_02392 0.90 +0.6 2,526,591 + MPMX20_02392 0.90 -2.2 2,526,611 + -0.6 2,526,612 - -0.4 2,526,619 - -0.3 2,526,640 + -0.6 2,526,668 + -0.0 2,526,676 - -0.8 2,526,693 - -0.5 2,526,718 + +0.2 2,526,721 + -0.8 2,526,726 - +0.6 2,526,786 + -1.1 2,526,823 - +0.8 2,526,825 - -0.4 2,526,825 - +1.1 2,526,827 + +1.4 2,526,830 - +0.9 2,526,977 + -0.7 2,526,985 - +0.2 2,526,985 - +0.8 2,527,076 + MPMX20_02393 0.38 -1.3 2,527,084 - MPMX20_02393 0.40 -1.1 2,527,303 + -0.5 2,527,364 + MPMX20_02394 0.25 -1.0 2,527,364 + MPMX20_02394 0.25 +0.7 2,527,369 + MPMX20_02394 0.27 -0.8 2,527,369 + MPMX20_02394 0.27 -1.1 2,527,372 - MPMX20_02394 0.29 -0.7 2,527,372 - MPMX20_02394 0.29 +0.2 2,527,377 - MPMX20_02394 0.31 +0.3 2,527,424 + MPMX20_02394 0.51 -1.2 2,527,433 - MPMX20_02394 0.55 -0.4 2,527,435 + MPMX20_02394 0.56 +2.2 2,527,435 + MPMX20_02394 0.56 -0.5 2,527,443 - MPMX20_02394 0.59 -0.1 2,527,571 - -1.6 2,527,593 + +0.3 2,527,684 + MPMX20_02395 0.18 -1.1 2,527,684 + MPMX20_02395 0.18 +0.7 2,527,684 + MPMX20_02395 0.18 +0.7 2,527,692 - MPMX20_02395 0.19 -0.1 2,527,692 - MPMX20_02395 0.19 -0.2 2,527,692 - MPMX20_02395 0.19 +1.0 2,527,694 - MPMX20_02395 0.19 +0.6 2,527,704 - MPMX20_02395 0.21 -0.9 2,527,755 + MPMX20_02395 0.29 -0.2 2,527,755 + MPMX20_02395 0.29 -0.4 2,527,755 + MPMX20_02395 0.29 -0.4 2,527,758 - MPMX20_02395 0.30 +0.6 2,527,763 - MPMX20_02395 0.31 +0.3 2,527,763 - MPMX20_02395 0.31 -1.3 2,527,798 + MPMX20_02395 0.36 -0.4 2,527,854 - MPMX20_02395 0.45 -0.1 2,527,865 + MPMX20_02395 0.47 -0.4 2,527,956 + MPMX20_02395 0.62 -0.8 2,527,964 + MPMX20_02395 0.63 +0.1 2,527,972 - MPMX20_02395 0.64 +1.0 2,528,003 + MPMX20_02395 0.69 +1.1 2,528,066 - MPMX20_02395 0.80 -0.5 2,528,086 + MPMX20_02395 0.83 +0.3 2,528,094 - MPMX20_02395 0.84 -0.3 2,528,113 + MPMX20_02395 0.87 +0.2 2,528,158 + -1.5 2,528,227 - +1.1 2,528,230 + +2.0 2,528,242 + -0.3 2,528,250 - +0.1 2,528,261 + -2.5
Or see this region's nucleotide sequence