Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02119 and MPMX20_02120 are separated by 186 nucleotides MPMX20_02120 and MPMX20_02121 are separated by 330 nucleotides MPMX20_02121 and MPMX20_02122 overlap by 90 nucleotides MPMX20_02122 and MPMX20_02123 are separated by 136 nucleotides
MPMX20_02119: MPMX20_02119 - hypothetical protein, at 2,209,050 to 2,210,015
_02119
MPMX20_02120: MPMX20_02120 - hypothetical protein, at 2,210,202 to 2,210,495
_02120
MPMX20_02121: MPMX20_02121 - hypothetical protein, at 2,210,826 to 2,211,086
_02121
MPMX20_02122: MPMX20_02122 - HTH-type transcriptional regulator DmlR, at 2,210,997 to 2,211,899
_02122
MPMX20_02123: MPMX20_02123 - putative oxidoreductase, at 2,212,036 to 2,212,782
_02123
Position (kb)
2210
2211
2212 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2209.929 kb on + strand at 2210.189 kb on - strand at 2210.398 kb on - strand, within MPMX20_02120 at 2210.913 kb on - strand, within MPMX20_02121 at 2210.918 kb on - strand, within MPMX20_02121 at 2210.918 kb on - strand, within MPMX20_02121 at 2210.933 kb on + strand, within MPMX20_02121 at 2210.951 kb on - strand, within MPMX20_02121 at 2210.951 kb on - strand, within MPMX20_02121 at 2210.981 kb on - strand, within MPMX20_02121 at 2210.987 kb on - strand, within MPMX20_02121 at 2211.017 kb on - strand at 2211.117 kb on - strand, within MPMX20_02122 at 2211.117 kb on - strand, within MPMX20_02122 at 2211.117 kb on - strand, within MPMX20_02122 at 2211.117 kb on - strand, within MPMX20_02122 at 2211.117 kb on - strand, within MPMX20_02122 at 2211.131 kb on - strand, within MPMX20_02122 at 2211.140 kb on - strand, within MPMX20_02122 at 2211.141 kb on - strand, within MPMX20_02122 at 2211.141 kb on - strand, within MPMX20_02122 at 2211.141 kb on - strand, within MPMX20_02122 at 2211.141 kb on - strand, within MPMX20_02122 at 2211.141 kb on - strand, within MPMX20_02122 at 2211.181 kb on - strand, within MPMX20_02122 at 2211.186 kb on - strand, within MPMX20_02122 at 2211.194 kb on - strand, within MPMX20_02122 at 2211.194 kb on - strand, within MPMX20_02122 at 2211.194 kb on - strand, within MPMX20_02122 at 2211.199 kb on - strand, within MPMX20_02122 at 2211.199 kb on - strand, within MPMX20_02122 at 2211.199 kb on - strand, within MPMX20_02122 at 2211.201 kb on - strand, within MPMX20_02122 at 2211.211 kb on - strand, within MPMX20_02122 at 2211.216 kb on - strand, within MPMX20_02122 at 2211.239 kb on - strand, within MPMX20_02122 at 2211.249 kb on - strand, within MPMX20_02122 at 2211.249 kb on - strand, within MPMX20_02122 at 2211.249 kb on - strand, within MPMX20_02122 at 2211.259 kb on - strand, within MPMX20_02122 at 2211.275 kb on - strand, within MPMX20_02122 at 2211.298 kb on - strand, within MPMX20_02122 at 2211.323 kb on + strand, within MPMX20_02122 at 2211.328 kb on - strand, within MPMX20_02122 at 2211.331 kb on - strand, within MPMX20_02122 at 2211.331 kb on - strand, within MPMX20_02122 at 2211.331 kb on - strand, within MPMX20_02122 at 2211.332 kb on - strand, within MPMX20_02122 at 2211.364 kb on - strand, within MPMX20_02122 at 2211.364 kb on - strand, within MPMX20_02122 at 2211.364 kb on - strand, within MPMX20_02122 at 2211.385 kb on + strand, within MPMX20_02122 at 2211.393 kb on - strand, within MPMX20_02122 at 2211.410 kb on - strand, within MPMX20_02122 at 2211.414 kb on - strand, within MPMX20_02122 at 2211.414 kb on - strand, within MPMX20_02122 at 2211.414 kb on - strand, within MPMX20_02122 at 2211.433 kb on - strand, within MPMX20_02122 at 2211.433 kb on - strand, within MPMX20_02122 at 2211.443 kb on + strand, within MPMX20_02122 at 2211.443 kb on + strand, within MPMX20_02122 at 2211.448 kb on + strand, within MPMX20_02122 at 2211.451 kb on - strand, within MPMX20_02122 at 2211.451 kb on - strand, within MPMX20_02122 at 2211.451 kb on - strand, within MPMX20_02122 at 2211.451 kb on - strand, within MPMX20_02122 at 2211.451 kb on - strand, within MPMX20_02122 at 2211.451 kb on - strand, within MPMX20_02122 at 2211.451 kb on - strand, within MPMX20_02122 at 2211.453 kb on + strand, within MPMX20_02122 at 2211.453 kb on + strand, within MPMX20_02122 at 2211.455 kb on + strand, within MPMX20_02122 at 2211.455 kb on + strand, within MPMX20_02122 at 2211.461 kb on - strand, within MPMX20_02122 at 2211.524 kb on + strand, within MPMX20_02122 at 2211.535 kb on + strand, within MPMX20_02122 at 2211.541 kb on + strand, within MPMX20_02122 at 2211.542 kb on + strand, within MPMX20_02122 at 2211.542 kb on + strand, within MPMX20_02122 at 2211.547 kb on + strand, within MPMX20_02122 at 2211.547 kb on + strand, within MPMX20_02122 at 2211.547 kb on + strand, within MPMX20_02122 at 2211.550 kb on - strand, within MPMX20_02122 at 2211.550 kb on - strand, within MPMX20_02122 at 2211.550 kb on - strand, within MPMX20_02122 at 2211.550 kb on - strand, within MPMX20_02122 at 2211.550 kb on - strand, within MPMX20_02122 at 2211.555 kb on - strand, within MPMX20_02122 at 2211.555 kb on - strand, within MPMX20_02122 at 2211.602 kb on - strand, within MPMX20_02122 at 2211.602 kb on - strand, within MPMX20_02122 at 2211.602 kb on - strand, within MPMX20_02122 at 2211.614 kb on - strand, within MPMX20_02122 at 2211.621 kb on + strand, within MPMX20_02122 at 2211.621 kb on + strand, within MPMX20_02122 at 2211.621 kb on + strand, within MPMX20_02122 at 2211.621 kb on + strand, within MPMX20_02122 at 2211.621 kb on + strand, within MPMX20_02122 at 2211.629 kb on - strand, within MPMX20_02122 at 2211.635 kb on - strand, within MPMX20_02122 at 2211.635 kb on - strand, within MPMX20_02122 at 2211.668 kb on - strand, within MPMX20_02122 at 2211.743 kb on - strand, within MPMX20_02122 at 2211.750 kb on - strand, within MPMX20_02122 at 2211.784 kb on - strand, within MPMX20_02122 at 2211.819 kb on + strand at 2211.821 kb on - strand at 2211.827 kb on - strand at 2211.827 kb on - strand at 2211.827 kb on - strand at 2211.899 kb on + strand at 2211.907 kb on - strand at 2211.925 kb on + strand at 2211.937 kb on - strand at 2211.957 kb on + strand at 2211.970 kb on + strand at 2211.971 kb on + strand at 2211.971 kb on + strand at 2211.971 kb on + strand at 2211.971 kb on + strand at 2211.971 kb on + strand at 2211.971 kb on + strand at 2211.974 kb on - strand at 2211.978 kb on - strand at 2211.978 kb on - strand at 2211.979 kb on - strand at 2211.979 kb on - strand at 2212.063 kb on + strand at 2212.065 kb on + strand at 2212.065 kb on + strand at 2212.065 kb on + strand at 2212.065 kb on + strand at 2212.067 kb on + strand at 2212.071 kb on - strand at 2212.073 kb on - strand at 2212.073 kb on - strand at 2212.073 kb on - strand at 2212.073 kb on - strand at 2212.080 kb on - strand at 2212.080 kb on - strand at 2212.085 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 2,209,929 + -0.4 2,210,189 - -0.8 2,210,398 - MPMX20_02120 0.67 +2.0 2,210,913 - MPMX20_02121 0.33 -1.4 2,210,918 - MPMX20_02121 0.35 -0.8 2,210,918 - MPMX20_02121 0.35 -0.4 2,210,933 + MPMX20_02121 0.41 -0.4 2,210,951 - MPMX20_02121 0.48 -1.5 2,210,951 - MPMX20_02121 0.48 -1.1 2,210,981 - MPMX20_02121 0.59 -0.8 2,210,987 - MPMX20_02121 0.62 +0.1 2,211,017 - +0.6 2,211,117 - MPMX20_02122 0.13 +0.6 2,211,117 - MPMX20_02122 0.13 -0.6 2,211,117 - MPMX20_02122 0.13 +0.0 2,211,117 - MPMX20_02122 0.13 +0.8 2,211,117 - MPMX20_02122 0.13 +0.7 2,211,131 - MPMX20_02122 0.15 -1.3 2,211,140 - MPMX20_02122 0.16 -1.7 2,211,141 - MPMX20_02122 0.16 +1.5 2,211,141 - MPMX20_02122 0.16 +0.5 2,211,141 - MPMX20_02122 0.16 -0.6 2,211,141 - MPMX20_02122 0.16 +0.0 2,211,141 - MPMX20_02122 0.16 -0.1 2,211,181 - MPMX20_02122 0.20 +0.7 2,211,186 - MPMX20_02122 0.21 -0.8 2,211,194 - MPMX20_02122 0.22 +0.8 2,211,194 - MPMX20_02122 0.22 +0.6 2,211,194 - MPMX20_02122 0.22 +0.6 2,211,199 - MPMX20_02122 0.22 +0.7 2,211,199 - MPMX20_02122 0.22 -0.4 2,211,199 - MPMX20_02122 0.22 +0.0 2,211,201 - MPMX20_02122 0.23 +0.5 2,211,211 - MPMX20_02122 0.24 +2.2 2,211,216 - MPMX20_02122 0.24 -0.2 2,211,239 - MPMX20_02122 0.27 +0.4 2,211,249 - MPMX20_02122 0.28 +0.2 2,211,249 - MPMX20_02122 0.28 -0.2 2,211,249 - MPMX20_02122 0.28 +0.6 2,211,259 - MPMX20_02122 0.29 +0.0 2,211,275 - MPMX20_02122 0.31 -0.5 2,211,298 - MPMX20_02122 0.33 +0.2 2,211,323 + MPMX20_02122 0.36 +0.7 2,211,328 - MPMX20_02122 0.37 +0.4 2,211,331 - MPMX20_02122 0.37 +0.7 2,211,331 - MPMX20_02122 0.37 -1.6 2,211,331 - MPMX20_02122 0.37 +0.6 2,211,332 - MPMX20_02122 0.37 -0.0 2,211,364 - MPMX20_02122 0.41 -2.1 2,211,364 - MPMX20_02122 0.41 -1.7 2,211,364 - MPMX20_02122 0.41 +0.2 2,211,385 + MPMX20_02122 0.43 +1.2 2,211,393 - MPMX20_02122 0.44 +0.1 2,211,410 - MPMX20_02122 0.46 -0.5 2,211,414 - MPMX20_02122 0.46 -1.2 2,211,414 - MPMX20_02122 0.46 +0.3 2,211,414 - MPMX20_02122 0.46 -0.0 2,211,433 - MPMX20_02122 0.48 +0.0 2,211,433 - MPMX20_02122 0.48 -3.4 2,211,443 + MPMX20_02122 0.49 +1.3 2,211,443 + MPMX20_02122 0.49 -1.2 2,211,448 + MPMX20_02122 0.50 -2.0 2,211,451 - MPMX20_02122 0.50 +0.1 2,211,451 - MPMX20_02122 0.50 -0.2 2,211,451 - MPMX20_02122 0.50 -0.4 2,211,451 - MPMX20_02122 0.50 -0.9 2,211,451 - MPMX20_02122 0.50 -0.1 2,211,451 - MPMX20_02122 0.50 -0.1 2,211,451 - MPMX20_02122 0.50 +0.8 2,211,453 + MPMX20_02122 0.50 +1.1 2,211,453 + MPMX20_02122 0.50 +0.4 2,211,455 + MPMX20_02122 0.51 -0.4 2,211,455 + MPMX20_02122 0.51 -2.0 2,211,461 - MPMX20_02122 0.51 -0.6 2,211,524 + MPMX20_02122 0.58 -0.1 2,211,535 + MPMX20_02122 0.60 -0.1 2,211,541 + MPMX20_02122 0.60 -0.1 2,211,542 + MPMX20_02122 0.60 +4.0 2,211,542 + MPMX20_02122 0.60 -0.9 2,211,547 + MPMX20_02122 0.61 +0.1 2,211,547 + MPMX20_02122 0.61 -1.0 2,211,547 + MPMX20_02122 0.61 -0.1 2,211,550 - MPMX20_02122 0.61 +0.2 2,211,550 - MPMX20_02122 0.61 -0.1 2,211,550 - MPMX20_02122 0.61 -0.0 2,211,550 - MPMX20_02122 0.61 +0.3 2,211,550 - MPMX20_02122 0.61 +0.2 2,211,555 - MPMX20_02122 0.62 +0.4 2,211,555 - MPMX20_02122 0.62 +2.6 2,211,602 - MPMX20_02122 0.67 -0.2 2,211,602 - MPMX20_02122 0.67 -1.4 2,211,602 - MPMX20_02122 0.67 -1.3 2,211,614 - MPMX20_02122 0.68 +0.4 2,211,621 + MPMX20_02122 0.69 -1.4 2,211,621 + MPMX20_02122 0.69 +0.1 2,211,621 + MPMX20_02122 0.69 +1.2 2,211,621 + MPMX20_02122 0.69 -0.0 2,211,621 + MPMX20_02122 0.69 -2.2 2,211,629 - MPMX20_02122 0.70 -0.3 2,211,635 - MPMX20_02122 0.71 -0.8 2,211,635 - MPMX20_02122 0.71 +0.3 2,211,668 - MPMX20_02122 0.74 +0.6 2,211,743 - MPMX20_02122 0.83 -0.3 2,211,750 - MPMX20_02122 0.83 -1.0 2,211,784 - MPMX20_02122 0.87 -0.3 2,211,819 + -0.0 2,211,821 - +0.7 2,211,827 - +0.3 2,211,827 - +0.4 2,211,827 - +0.4 2,211,899 + -2.1 2,211,907 - -2.0 2,211,925 + -0.8 2,211,937 - +0.8 2,211,957 + +1.2 2,211,970 + +0.5 2,211,971 + +0.2 2,211,971 + -1.9 2,211,971 + -0.5 2,211,971 + -0.6 2,211,971 + +0.2 2,211,971 + +0.0 2,211,974 - +0.2 2,211,978 - -0.7 2,211,978 - +2.0 2,211,979 - +0.2 2,211,979 - -1.4 2,212,063 + -0.8 2,212,065 + +0.8 2,212,065 + -0.3 2,212,065 + -1.6 2,212,065 + +1.0 2,212,067 + +1.3 2,212,071 - +0.0 2,212,073 - +0.3 2,212,073 - -0.6 2,212,073 - -0.4 2,212,073 - +0.7 2,212,080 - +0.5 2,212,080 - +0.4 2,212,085 + -2.2
Or see this region's nucleotide sequence