Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01949 and MPMX20_01950 are separated by 60 nucleotides MPMX20_01950 and MPMX20_01951 are separated by 310 nucleotides
MPMX20_01949: MPMX20_01949 - putative L,D-transpeptidase YnhG, at 2,044,864 to 2,045,877
_01949
MPMX20_01950: MPMX20_01950 - Major outer membrane lipoprotein Lpp 1, at 2,045,938 to 2,046,174
_01950
MPMX20_01951: MPMX20_01951 - Pyruvate kinase I, at 2,046,485 to 2,047,897
_01951
Position (kb)
2045
2046
2047 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2044.943 kb on - strand at 2044.994 kb on - strand, within MPMX20_01949 at 2045.006 kb on - strand, within MPMX20_01949 at 2045.014 kb on + strand, within MPMX20_01949 at 2045.050 kb on - strand, within MPMX20_01949 at 2045.050 kb on - strand, within MPMX20_01949 at 2045.050 kb on - strand, within MPMX20_01949 at 2045.050 kb on - strand, within MPMX20_01949 at 2045.055 kb on - strand, within MPMX20_01949 at 2045.090 kb on + strand, within MPMX20_01949 at 2045.093 kb on - strand, within MPMX20_01949 at 2045.093 kb on - strand, within MPMX20_01949 at 2045.098 kb on - strand, within MPMX20_01949 at 2045.098 kb on - strand, within MPMX20_01949 at 2045.098 kb on - strand, within MPMX20_01949 at 2045.098 kb on - strand, within MPMX20_01949 at 2045.117 kb on - strand, within MPMX20_01949 at 2045.152 kb on - strand, within MPMX20_01949 at 2045.152 kb on - strand, within MPMX20_01949 at 2045.161 kb on + strand, within MPMX20_01949 at 2045.161 kb on + strand, within MPMX20_01949 at 2045.169 kb on - strand, within MPMX20_01949 at 2045.192 kb on - strand, within MPMX20_01949 at 2045.270 kb on + strand, within MPMX20_01949 at 2045.309 kb on + strand, within MPMX20_01949 at 2045.309 kb on + strand, within MPMX20_01949 at 2045.317 kb on - strand, within MPMX20_01949 at 2045.317 kb on - strand, within MPMX20_01949 at 2045.336 kb on + strand, within MPMX20_01949 at 2045.336 kb on + strand, within MPMX20_01949 at 2045.336 kb on + strand, within MPMX20_01949 at 2045.367 kb on + strand, within MPMX20_01949 at 2045.375 kb on - strand, within MPMX20_01949 at 2045.465 kb on + strand, within MPMX20_01949 at 2045.575 kb on + strand, within MPMX20_01949 at 2045.645 kb on - strand, within MPMX20_01949 at 2045.678 kb on + strand, within MPMX20_01949 at 2045.714 kb on - strand, within MPMX20_01949 at 2045.722 kb on - strand, within MPMX20_01949 at 2045.805 kb on - strand at 2045.818 kb on - strand at 2045.823 kb on - strand at 2045.858 kb on + strand at 2045.874 kb on + strand at 2045.880 kb on + strand at 2045.880 kb on + strand at 2045.955 kb on - strand at 2045.955 kb on - strand at 2046.003 kb on - strand, within MPMX20_01950 at 2046.003 kb on - strand, within MPMX20_01950 at 2046.126 kb on + strand, within MPMX20_01950 at 2046.126 kb on + strand, within MPMX20_01950 at 2046.126 kb on + strand, within MPMX20_01950 at 2046.134 kb on - strand, within MPMX20_01950 at 2046.136 kb on - strand, within MPMX20_01950 at 2046.138 kb on + strand, within MPMX20_01950 at 2046.146 kb on - strand, within MPMX20_01950 at 2046.146 kb on - strand, within MPMX20_01950 at 2046.146 kb on - strand, within MPMX20_01950 at 2046.167 kb on - strand at 2046.184 kb on + strand at 2046.192 kb on - strand at 2046.194 kb on + strand at 2046.194 kb on + strand at 2046.197 kb on - strand at 2046.202 kb on - strand at 2046.202 kb on - strand at 2046.202 kb on - strand at 2046.202 kb on - strand at 2046.204 kb on + strand at 2046.220 kb on + strand at 2046.220 kb on + strand at 2046.220 kb on + strand at 2046.228 kb on - strand at 2046.228 kb on - strand at 2046.263 kb on + strand at 2046.263 kb on + strand at 2046.499 kb on - strand at 2046.501 kb on + strand at 2046.515 kb on - strand at 2046.515 kb on - strand at 2046.515 kb on - strand at 2046.572 kb on - strand at 2046.673 kb on + strand, within MPMX20_01951 at 2046.868 kb on + strand, within MPMX20_01951 at 2046.973 kb on - strand, within MPMX20_01951 at 2046.973 kb on - strand, within MPMX20_01951 at 2047.071 kb on - strand, within MPMX20_01951 at 2047.079 kb on - strand, within MPMX20_01951 at 2047.100 kb on - strand, within MPMX20_01951
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 2,044,943 - -0.1 2,044,994 - MPMX20_01949 0.13 +1.1 2,045,006 - MPMX20_01949 0.14 +0.2 2,045,014 + MPMX20_01949 0.15 +0.9 2,045,050 - MPMX20_01949 0.18 +0.0 2,045,050 - MPMX20_01949 0.18 +0.5 2,045,050 - MPMX20_01949 0.18 +0.4 2,045,050 - MPMX20_01949 0.18 -0.5 2,045,055 - MPMX20_01949 0.19 -1.2 2,045,090 + MPMX20_01949 0.22 +1.4 2,045,093 - MPMX20_01949 0.23 -1.1 2,045,093 - MPMX20_01949 0.23 -0.4 2,045,098 - MPMX20_01949 0.23 -0.4 2,045,098 - MPMX20_01949 0.23 +0.3 2,045,098 - MPMX20_01949 0.23 -0.5 2,045,098 - MPMX20_01949 0.23 -0.5 2,045,117 - MPMX20_01949 0.25 -0.2 2,045,152 - MPMX20_01949 0.28 -0.3 2,045,152 - MPMX20_01949 0.28 +1.2 2,045,161 + MPMX20_01949 0.29 +0.6 2,045,161 + MPMX20_01949 0.29 -0.4 2,045,169 - MPMX20_01949 0.30 -0.7 2,045,192 - MPMX20_01949 0.32 +0.2 2,045,270 + MPMX20_01949 0.40 +0.5 2,045,309 + MPMX20_01949 0.44 -2.6 2,045,309 + MPMX20_01949 0.44 -0.2 2,045,317 - MPMX20_01949 0.45 -1.1 2,045,317 - MPMX20_01949 0.45 -0.0 2,045,336 + MPMX20_01949 0.47 -0.4 2,045,336 + MPMX20_01949 0.47 +0.2 2,045,336 + MPMX20_01949 0.47 -0.5 2,045,367 + MPMX20_01949 0.50 -0.2 2,045,375 - MPMX20_01949 0.50 +0.4 2,045,465 + MPMX20_01949 0.59 -1.8 2,045,575 + MPMX20_01949 0.70 +0.7 2,045,645 - MPMX20_01949 0.77 -0.2 2,045,678 + MPMX20_01949 0.80 +1.0 2,045,714 - MPMX20_01949 0.84 -0.5 2,045,722 - MPMX20_01949 0.85 -0.1 2,045,805 - -0.6 2,045,818 - +0.3 2,045,823 - -0.6 2,045,858 + -0.3 2,045,874 + -0.0 2,045,880 + +0.6 2,045,880 + -1.0 2,045,955 - -1.3 2,045,955 - -3.3 2,046,003 - MPMX20_01950 0.27 -2.3 2,046,003 - MPMX20_01950 0.27 -3.4 2,046,126 + MPMX20_01950 0.79 -0.4 2,046,126 + MPMX20_01950 0.79 -1.7 2,046,126 + MPMX20_01950 0.79 -1.4 2,046,134 - MPMX20_01950 0.83 -4.0 2,046,136 - MPMX20_01950 0.84 -3.3 2,046,138 + MPMX20_01950 0.84 -1.7 2,046,146 - MPMX20_01950 0.88 -3.1 2,046,146 - MPMX20_01950 0.88 -3.9 2,046,146 - MPMX20_01950 0.88 -3.1 2,046,167 - -2.2 2,046,184 + -0.9 2,046,192 - -1.0 2,046,194 + -1.5 2,046,194 + -4.2 2,046,197 - -3.2 2,046,202 - -4.4 2,046,202 - -4.3 2,046,202 - +0.1 2,046,202 - -3.6 2,046,204 + -3.3 2,046,220 + -1.3 2,046,220 + -1.4 2,046,220 + -3.4 2,046,228 - -1.9 2,046,228 - -5.2 2,046,263 + -0.7 2,046,263 + -1.4 2,046,499 - -0.1 2,046,501 + -0.9 2,046,515 - -0.5 2,046,515 - -0.1 2,046,515 - +0.2 2,046,572 - +0.2 2,046,673 + MPMX20_01951 0.13 +0.8 2,046,868 + MPMX20_01951 0.27 -0.4 2,046,973 - MPMX20_01951 0.35 +0.5 2,046,973 - MPMX20_01951 0.35 -1.1 2,047,071 - MPMX20_01951 0.41 +0.7 2,047,079 - MPMX20_01951 0.42 -1.4 2,047,100 - MPMX20_01951 0.44 +0.8
Or see this region's nucleotide sequence