Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01900 and MPMX20_01901 are separated by 4 nucleotides MPMX20_01901 and MPMX20_01902 are separated by 97 nucleotides
MPMX20_01900: MPMX20_01900 - Phenylalanine--tRNA ligase beta subunit, at 1,991,008 to 1,993,395
_01900
MPMX20_01901: MPMX20_01901 - Integration host factor subunit alpha, at 1,993,400 to 1,993,699
_01901
MPMX20_01902: MPMX20_01902 - Vitamin B12 import system permease protein BtuC, at 1,993,797 to 1,994,783
_01902
Position (kb)
1993
1994 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1993.397 kb on + strand at 1993.443 kb on + strand, within MPMX20_01901 at 1993.521 kb on - strand, within MPMX20_01901 at 1993.585 kb on - strand, within MPMX20_01901 at 1993.639 kb on + strand, within MPMX20_01901 at 1993.647 kb on - strand, within MPMX20_01901 at 1993.684 kb on + strand at 1993.684 kb on + strand at 1993.684 kb on + strand at 1993.692 kb on - strand at 1993.692 kb on - strand at 1993.748 kb on + strand at 1993.752 kb on + strand at 1993.831 kb on + strand at 1993.831 kb on + strand at 1993.893 kb on - strand at 1993.893 kb on - strand at 1993.893 kb on - strand at 1993.900 kb on + strand, within MPMX20_01902 at 1993.900 kb on + strand, within MPMX20_01902 at 1993.908 kb on - strand, within MPMX20_01902 at 1993.913 kb on + strand, within MPMX20_01902 at 1993.918 kb on - strand, within MPMX20_01902 at 1993.926 kb on - strand, within MPMX20_01902 at 1994.070 kb on - strand, within MPMX20_01902 at 1994.089 kb on - strand, within MPMX20_01902 at 1994.094 kb on + strand, within MPMX20_01902 at 1994.157 kb on - strand, within MPMX20_01902 at 1994.216 kb on + strand, within MPMX20_01902 at 1994.277 kb on + strand, within MPMX20_01902 at 1994.277 kb on + strand, within MPMX20_01902 at 1994.292 kb on + strand, within MPMX20_01902 at 1994.292 kb on + strand, within MPMX20_01902 at 1994.292 kb on + strand, within MPMX20_01902 at 1994.315 kb on - strand, within MPMX20_01902 at 1994.316 kb on - strand, within MPMX20_01902 at 1994.330 kb on + strand, within MPMX20_01902 at 1994.410 kb on + strand, within MPMX20_01902 at 1994.418 kb on - strand, within MPMX20_01902 at 1994.502 kb on + strand, within MPMX20_01902 at 1994.502 kb on - strand, within MPMX20_01902 at 1994.547 kb on - strand, within MPMX20_01902 at 1994.562 kb on + strand, within MPMX20_01902
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 1,993,397 + -0.1 1,993,443 + MPMX20_01901 0.14 -2.2 1,993,521 - MPMX20_01901 0.40 -2.3 1,993,585 - MPMX20_01901 0.62 -2.9 1,993,639 + MPMX20_01901 0.80 -2.1 1,993,647 - MPMX20_01901 0.82 -1.7 1,993,684 + -0.5 1,993,684 + -1.0 1,993,684 + -0.3 1,993,692 - -2.6 1,993,692 - -3.3 1,993,748 + +0.3 1,993,752 + +0.6 1,993,831 + -1.3 1,993,831 + +0.6 1,993,893 - -0.7 1,993,893 - -0.4 1,993,893 - -0.1 1,993,900 + MPMX20_01902 0.10 +0.4 1,993,900 + MPMX20_01902 0.10 -1.5 1,993,908 - MPMX20_01902 0.11 -0.4 1,993,913 + MPMX20_01902 0.12 -0.1 1,993,918 - MPMX20_01902 0.12 +0.5 1,993,926 - MPMX20_01902 0.13 -0.1 1,994,070 - MPMX20_01902 0.28 -0.9 1,994,089 - MPMX20_01902 0.30 -0.7 1,994,094 + MPMX20_01902 0.30 -0.5 1,994,157 - MPMX20_01902 0.36 -0.8 1,994,216 + MPMX20_01902 0.42 -0.1 1,994,277 + MPMX20_01902 0.49 -0.0 1,994,277 + MPMX20_01902 0.49 +0.5 1,994,292 + MPMX20_01902 0.50 -0.4 1,994,292 + MPMX20_01902 0.50 -0.5 1,994,292 + MPMX20_01902 0.50 -0.0 1,994,315 - MPMX20_01902 0.52 -0.3 1,994,316 - MPMX20_01902 0.53 -0.2 1,994,330 + MPMX20_01902 0.54 -0.7 1,994,410 + MPMX20_01902 0.62 -0.9 1,994,418 - MPMX20_01902 0.63 +0.4 1,994,502 + MPMX20_01902 0.71 +1.9 1,994,502 - MPMX20_01902 0.71 -0.0 1,994,547 - MPMX20_01902 0.76 -0.5 1,994,562 + MPMX20_01902 0.78 +0.5
Or see this region's nucleotide sequence