Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01764 and MPMX20_01765 are separated by 40 nucleotides MPMX20_01765 and MPMX20_01766 are separated by 598 nucleotides
MPMX20_01764: MPMX20_01764 - HTH-type transcriptional regulator DmlR, at 1,855,639 to 1,856,577
_01764
MPMX20_01765: MPMX20_01765 - Ribonuclease E, at 1,856,618 to 1,859,743
_01765
MPMX20_01766: MPMX20_01766 - Ribosomal large subunit pseudouridine synthase C, at 1,860,342 to 1,861,262
_01766
Position (kb)
1856
1857
1858
1859
1860 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1855.675 kb on - strand at 1855.685 kb on + strand at 1855.732 kb on - strand at 1855.744 kb on + strand, within MPMX20_01764 at 1855.884 kb on - strand, within MPMX20_01764 at 1855.914 kb on + strand, within MPMX20_01764 at 1855.961 kb on + strand, within MPMX20_01764 at 1855.969 kb on - strand, within MPMX20_01764 at 1856.007 kb on + strand, within MPMX20_01764 at 1856.015 kb on - strand, within MPMX20_01764 at 1856.076 kb on + strand, within MPMX20_01764 at 1856.120 kb on + strand, within MPMX20_01764 at 1856.138 kb on - strand, within MPMX20_01764 at 1856.140 kb on + strand, within MPMX20_01764 at 1856.148 kb on - strand, within MPMX20_01764 at 1856.148 kb on - strand, within MPMX20_01764 at 1856.150 kb on + strand, within MPMX20_01764 at 1856.150 kb on + strand, within MPMX20_01764 at 1856.162 kb on + strand, within MPMX20_01764 at 1856.240 kb on + strand, within MPMX20_01764 at 1856.305 kb on - strand, within MPMX20_01764 at 1856.356 kb on + strand, within MPMX20_01764 at 1856.364 kb on - strand, within MPMX20_01764 at 1856.365 kb on - strand, within MPMX20_01764 at 1856.720 kb on - strand at 1856.819 kb on - strand at 1857.042 kb on + strand, within MPMX20_01765 at 1857.120 kb on - strand, within MPMX20_01765 at 1857.244 kb on - strand, within MPMX20_01765 at 1857.314 kb on - strand, within MPMX20_01765 at 1857.406 kb on - strand, within MPMX20_01765 at 1857.419 kb on + strand, within MPMX20_01765 at 1857.627 kb on - strand, within MPMX20_01765 at 1857.886 kb on - strand, within MPMX20_01765 at 1858.047 kb on - strand, within MPMX20_01765 at 1859.813 kb on - strand at 1859.845 kb on - strand at 1859.851 kb on - strand at 1859.852 kb on - strand at 1859.852 kb on - strand at 1859.852 kb on - strand at 1859.852 kb on - strand at 1859.908 kb on - strand at 1859.942 kb on - strand at 1859.942 kb on - strand at 1859.942 kb on - strand at 1859.942 kb on - strand at 1859.942 kb on - strand at 1859.965 kb on - strand at 1859.965 kb on - strand at 1860.024 kb on - strand at 1860.185 kb on + strand at 1860.185 kb on + strand at 1860.225 kb on + strand at 1860.232 kb on + strand at 1860.326 kb on + strand at 1860.377 kb on - strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.409 kb on - strand at 1860.409 kb on - strand at 1860.409 kb on - strand at 1860.409 kb on - strand at 1860.409 kb on - strand at 1860.409 kb on - strand at 1860.447 kb on + strand, within MPMX20_01766 at 1860.447 kb on + strand, within MPMX20_01766 at 1860.500 kb on - strand, within MPMX20_01766 at 1860.502 kb on + strand, within MPMX20_01766 at 1860.592 kb on + strand, within MPMX20_01766 at 1860.621 kb on - strand, within MPMX20_01766 at 1860.654 kb on - strand, within MPMX20_01766 at 1860.659 kb on - strand, within MPMX20_01766 at 1860.681 kb on - strand, within MPMX20_01766 at 1860.681 kb on - strand, within MPMX20_01766 at 1860.731 kb on + strand, within MPMX20_01766
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 1,855,675 - -0.6 1,855,685 + -2.3 1,855,732 - -0.1 1,855,744 + MPMX20_01764 0.11 +1.4 1,855,884 - MPMX20_01764 0.26 -0.2 1,855,914 + MPMX20_01764 0.29 -0.6 1,855,961 + MPMX20_01764 0.34 +0.0 1,855,969 - MPMX20_01764 0.35 -0.4 1,856,007 + MPMX20_01764 0.39 -4.2 1,856,015 - MPMX20_01764 0.40 -1.0 1,856,076 + MPMX20_01764 0.47 +0.5 1,856,120 + MPMX20_01764 0.51 -0.0 1,856,138 - MPMX20_01764 0.53 -1.2 1,856,140 + MPMX20_01764 0.53 +0.1 1,856,148 - MPMX20_01764 0.54 -0.7 1,856,148 - MPMX20_01764 0.54 -0.6 1,856,150 + MPMX20_01764 0.54 +0.8 1,856,150 + MPMX20_01764 0.54 -1.8 1,856,162 + MPMX20_01764 0.56 -0.1 1,856,240 + MPMX20_01764 0.64 +1.2 1,856,305 - MPMX20_01764 0.71 +0.2 1,856,356 + MPMX20_01764 0.76 +0.5 1,856,364 - MPMX20_01764 0.77 -0.1 1,856,365 - MPMX20_01764 0.77 -0.2 1,856,720 - -0.4 1,856,819 - +0.3 1,857,042 + MPMX20_01765 0.14 -1.2 1,857,120 - MPMX20_01765 0.16 -0.7 1,857,244 - MPMX20_01765 0.20 -1.7 1,857,314 - MPMX20_01765 0.22 +1.4 1,857,406 - MPMX20_01765 0.25 -0.1 1,857,419 + MPMX20_01765 0.26 +0.2 1,857,627 - MPMX20_01765 0.32 -1.4 1,857,886 - MPMX20_01765 0.41 -2.7 1,858,047 - MPMX20_01765 0.46 -2.0 1,859,813 - -0.6 1,859,845 - -2.7 1,859,851 - -0.5 1,859,852 - -0.2 1,859,852 - -0.2 1,859,852 - -0.2 1,859,852 - -0.7 1,859,908 - -2.2 1,859,942 - -0.9 1,859,942 - -0.1 1,859,942 - -0.1 1,859,942 - -1.6 1,859,942 - -0.6 1,859,965 - -0.3 1,859,965 - +0.3 1,860,024 - -0.7 1,860,185 + -0.8 1,860,185 + -0.2 1,860,225 + -1.0 1,860,232 + +0.0 1,860,326 + -2.1 1,860,377 - +0.5 1,860,401 + -0.1 1,860,401 + -0.5 1,860,401 + +0.4 1,860,401 + -1.0 1,860,401 + +0.1 1,860,401 + +1.6 1,860,401 + -1.1 1,860,401 + -0.3 1,860,409 - -1.4 1,860,409 - +1.3 1,860,409 - -1.4 1,860,409 - -0.5 1,860,409 - -0.5 1,860,409 - -1.0 1,860,447 + MPMX20_01766 0.11 -0.6 1,860,447 + MPMX20_01766 0.11 -1.2 1,860,500 - MPMX20_01766 0.17 -1.0 1,860,502 + MPMX20_01766 0.17 +0.4 1,860,592 + MPMX20_01766 0.27 +0.4 1,860,621 - MPMX20_01766 0.30 -3.3 1,860,654 - MPMX20_01766 0.34 +0.7 1,860,659 - MPMX20_01766 0.34 -2.0 1,860,681 - MPMX20_01766 0.37 -0.8 1,860,681 - MPMX20_01766 0.37 -0.3 1,860,731 + MPMX20_01766 0.42 -0.5
Or see this region's nucleotide sequence