Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01551 and MPMX20_01552 are separated by 135 nucleotides MPMX20_01552 and MPMX20_01553 are separated by 127 nucleotides MPMX20_01553 and MPMX20_01554 are separated by 9 nucleotides
MPMX20_01551: MPMX20_01551 - Leucine-responsive regulatory protein, at 1,624,885 to 1,625,379
_01551
MPMX20_01552: MPMX20_01552 - hypothetical protein, at 1,625,515 to 1,629,378
_01552
MPMX20_01553: MPMX20_01553 - Outer-membrane lipoprotein carrier protein, at 1,629,506 to 1,630,120
_01553
MPMX20_01554: MPMX20_01554 - Replication-associated recombination protein A, at 1,630,130 to 1,631,473
_01554
Position (kb)
1625
1626
1627
1628
1629
1630 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1624.524 kb on - strand at 1624.526 kb on - strand at 1624.583 kb on + strand at 1624.647 kb on - strand at 1624.695 kb on + strand at 1624.716 kb on - strand at 1624.819 kb on + strand at 1624.819 kb on + strand at 1624.819 kb on + strand at 1624.827 kb on - strand at 1624.827 kb on - strand at 1624.831 kb on + strand at 1624.832 kb on - strand at 1624.839 kb on - strand at 1624.841 kb on + strand at 1624.841 kb on + strand at 1624.841 kb on + strand at 1624.842 kb on + strand at 1624.842 kb on + strand at 1624.843 kb on + strand at 1624.851 kb on - strand at 1624.855 kb on - strand at 1624.856 kb on - strand at 1624.863 kb on + strand at 1624.923 kb on - strand at 1624.923 kb on - strand at 1625.019 kb on + strand, within MPMX20_01551 at 1625.027 kb on - strand, within MPMX20_01551 at 1625.034 kb on - strand, within MPMX20_01551 at 1625.061 kb on + strand, within MPMX20_01551 at 1625.061 kb on + strand, within MPMX20_01551 at 1625.061 kb on + strand, within MPMX20_01551 at 1625.069 kb on - strand, within MPMX20_01551 at 1625.069 kb on - strand, within MPMX20_01551 at 1625.069 kb on - strand, within MPMX20_01551 at 1625.069 kb on - strand, within MPMX20_01551 at 1625.071 kb on + strand, within MPMX20_01551 at 1625.074 kb on - strand, within MPMX20_01551 at 1625.082 kb on - strand, within MPMX20_01551 at 1625.272 kb on - strand, within MPMX20_01551 at 1625.285 kb on - strand, within MPMX20_01551 at 1625.321 kb on + strand, within MPMX20_01551 at 1625.329 kb on - strand, within MPMX20_01551 at 1625.329 kb on - strand, within MPMX20_01551 at 1625.349 kb on + strand at 1625.379 kb on + strand at 1625.387 kb on - strand at 1625.486 kb on + strand at 1625.486 kb on + strand at 1626.089 kb on + strand, within MPMX20_01552 at 1626.097 kb on - strand, within MPMX20_01552 at 1626.111 kb on - strand, within MPMX20_01552 at 1626.181 kb on + strand, within MPMX20_01552 at 1626.189 kb on - strand, within MPMX20_01552 at 1626.758 kb on - strand, within MPMX20_01552 at 1626.777 kb on + strand, within MPMX20_01552 at 1626.792 kb on + strand, within MPMX20_01552 at 1626.800 kb on - strand, within MPMX20_01552 at 1626.964 kb on - strand, within MPMX20_01552 at 1627.040 kb on - strand, within MPMX20_01552 at 1627.191 kb on - strand, within MPMX20_01552 at 1627.200 kb on + strand, within MPMX20_01552 at 1627.200 kb on + strand, within MPMX20_01552 at 1627.208 kb on - strand, within MPMX20_01552 at 1627.633 kb on + strand, within MPMX20_01552 at 1628.021 kb on + strand, within MPMX20_01552 at 1628.029 kb on - strand, within MPMX20_01552 at 1628.042 kb on + strand, within MPMX20_01552 at 1628.042 kb on + strand, within MPMX20_01552 at 1628.042 kb on + strand, within MPMX20_01552 at 1628.144 kb on + strand, within MPMX20_01552 at 1628.189 kb on - strand, within MPMX20_01552 at 1628.190 kb on - strand, within MPMX20_01552 at 1628.192 kb on + strand, within MPMX20_01552 at 1628.200 kb on - strand, within MPMX20_01552 at 1628.200 kb on - strand, within MPMX20_01552 at 1628.222 kb on + strand, within MPMX20_01552 at 1628.222 kb on + strand, within MPMX20_01552 at 1628.239 kb on + strand, within MPMX20_01552 at 1628.239 kb on + strand, within MPMX20_01552 at 1628.247 kb on - strand, within MPMX20_01552 at 1628.278 kb on - strand, within MPMX20_01552 at 1628.972 kb on - strand, within MPMX20_01552 at 1628.995 kb on - strand at 1629.023 kb on - strand at 1629.074 kb on + strand at 1629.135 kb on - strand at 1629.339 kb on - strand at 1629.399 kb on + strand at 1629.451 kb on + strand at 1629.451 kb on + strand at 1629.451 kb on + strand at 1630.171 kb on + strand at 1630.210 kb on + strand at 1630.228 kb on + strand at 1630.236 kb on - strand at 1630.299 kb on - strand, within MPMX20_01554
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 1,624,524 - +0.6 1,624,526 - -1.5 1,624,583 + -0.0 1,624,647 - -0.6 1,624,695 + -1.7 1,624,716 - -0.0 1,624,819 + -0.7 1,624,819 + +0.7 1,624,819 + +0.1 1,624,827 - +0.4 1,624,827 - +0.4 1,624,831 + -0.4 1,624,832 - +0.6 1,624,839 - -0.6 1,624,841 + -0.8 1,624,841 + +1.2 1,624,841 + -0.1 1,624,842 + +0.6 1,624,842 + +0.8 1,624,843 + +0.4 1,624,851 - -1.4 1,624,855 - +0.5 1,624,856 - -0.4 1,624,863 + +1.2 1,624,923 - +0.1 1,624,923 - -1.1 1,625,019 + MPMX20_01551 0.27 +0.1 1,625,027 - MPMX20_01551 0.29 +0.1 1,625,034 - MPMX20_01551 0.30 +0.1 1,625,061 + MPMX20_01551 0.36 +0.5 1,625,061 + MPMX20_01551 0.36 -0.1 1,625,061 + MPMX20_01551 0.36 +0.6 1,625,069 - MPMX20_01551 0.37 +1.3 1,625,069 - MPMX20_01551 0.37 -1.0 1,625,069 - MPMX20_01551 0.37 -1.1 1,625,069 - MPMX20_01551 0.37 +1.6 1,625,071 + MPMX20_01551 0.38 +0.6 1,625,074 - MPMX20_01551 0.38 -1.4 1,625,082 - MPMX20_01551 0.40 +0.2 1,625,272 - MPMX20_01551 0.78 -1.7 1,625,285 - MPMX20_01551 0.81 -0.1 1,625,321 + MPMX20_01551 0.88 +0.5 1,625,329 - MPMX20_01551 0.90 -0.4 1,625,329 - MPMX20_01551 0.90 +0.7 1,625,349 + +0.7 1,625,379 + +0.1 1,625,387 - -0.8 1,625,486 + -0.8 1,625,486 + -1.1 1,626,089 + MPMX20_01552 0.15 -0.1 1,626,097 - MPMX20_01552 0.15 -0.1 1,626,111 - MPMX20_01552 0.15 -0.9 1,626,181 + MPMX20_01552 0.17 +0.9 1,626,189 - MPMX20_01552 0.17 -2.5 1,626,758 - MPMX20_01552 0.32 -2.3 1,626,777 + MPMX20_01552 0.33 -1.5 1,626,792 + MPMX20_01552 0.33 -0.7 1,626,800 - MPMX20_01552 0.33 +0.3 1,626,964 - MPMX20_01552 0.38 -1.4 1,627,040 - MPMX20_01552 0.39 -1.9 1,627,191 - MPMX20_01552 0.43 -2.3 1,627,200 + MPMX20_01552 0.44 -0.9 1,627,200 + MPMX20_01552 0.44 -1.3 1,627,208 - MPMX20_01552 0.44 -1.3 1,627,633 + MPMX20_01552 0.55 -1.5 1,628,021 + MPMX20_01552 0.65 -0.9 1,628,029 - MPMX20_01552 0.65 -2.1 1,628,042 + MPMX20_01552 0.65 -1.9 1,628,042 + MPMX20_01552 0.65 -1.4 1,628,042 + MPMX20_01552 0.65 +0.3 1,628,144 + MPMX20_01552 0.68 -0.9 1,628,189 - MPMX20_01552 0.69 -2.2 1,628,190 - MPMX20_01552 0.69 -0.7 1,628,192 + MPMX20_01552 0.69 +1.4 1,628,200 - MPMX20_01552 0.69 -1.7 1,628,200 - MPMX20_01552 0.69 -2.4 1,628,222 + MPMX20_01552 0.70 -1.3 1,628,222 + MPMX20_01552 0.70 -1.3 1,628,239 + MPMX20_01552 0.70 -0.4 1,628,239 + MPMX20_01552 0.70 +1.9 1,628,247 - MPMX20_01552 0.71 -0.7 1,628,278 - MPMX20_01552 0.72 -1.3 1,628,972 - MPMX20_01552 0.89 -0.7 1,628,995 - +0.3 1,629,023 - +1.9 1,629,074 + -0.1 1,629,135 - -0.9 1,629,339 - -2.4 1,629,399 + -1.1 1,629,451 + -1.2 1,629,451 + +0.9 1,629,451 + +1.3 1,630,171 + -2.2 1,630,210 + -0.7 1,630,228 + -1.0 1,630,236 - -0.5 1,630,299 - MPMX20_01554 0.13 -0.6
Or see this region's nucleotide sequence