Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01549 and MPMX20_01550 are separated by 114 nucleotides MPMX20_01550 and MPMX20_01551 are separated by 517 nucleotides
MPMX20_01549: MPMX20_01549 - ATP-binding/permease protein CydD, at 1,621,491 to 1,623,257
_01549
MPMX20_01550: MPMX20_01550 - Thioredoxin reductase, at 1,623,372 to 1,624,367
_01550
MPMX20_01551: MPMX20_01551 - Leucine-responsive regulatory protein, at 1,624,885 to 1,625,379
_01551
Position (kb)
1623
1624
1625 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1622.504 kb on + strand, within MPMX20_01549 at 1622.534 kb on + strand, within MPMX20_01549 at 1622.534 kb on - strand, within MPMX20_01549 at 1622.540 kb on - strand, within MPMX20_01549 at 1622.873 kb on + strand, within MPMX20_01549 at 1622.881 kb on - strand, within MPMX20_01549 at 1622.913 kb on - strand, within MPMX20_01549 at 1623.053 kb on + strand, within MPMX20_01549 at 1623.150 kb on - strand at 1623.223 kb on - strand at 1623.228 kb on + strand at 1623.578 kb on - strand, within MPMX20_01550 at 1623.670 kb on + strand, within MPMX20_01550 at 1623.791 kb on - strand, within MPMX20_01550 at 1623.835 kb on - strand, within MPMX20_01550 at 1624.267 kb on + strand, within MPMX20_01550 at 1624.267 kb on + strand, within MPMX20_01550 at 1624.267 kb on + strand, within MPMX20_01550 at 1624.267 kb on + strand, within MPMX20_01550 at 1624.275 kb on - strand at 1624.275 kb on - strand at 1624.275 kb on - strand at 1624.323 kb on + strand at 1624.323 kb on + strand at 1624.323 kb on + strand at 1624.325 kb on + strand at 1624.333 kb on - strand at 1624.336 kb on + strand at 1624.343 kb on - strand at 1624.454 kb on - strand at 1624.467 kb on + strand at 1624.524 kb on - strand at 1624.526 kb on - strand at 1624.583 kb on + strand at 1624.647 kb on - strand at 1624.695 kb on + strand at 1624.716 kb on - strand at 1624.819 kb on + strand at 1624.819 kb on + strand at 1624.819 kb on + strand at 1624.827 kb on - strand at 1624.827 kb on - strand at 1624.831 kb on + strand at 1624.832 kb on - strand at 1624.839 kb on - strand at 1624.841 kb on + strand at 1624.841 kb on + strand at 1624.841 kb on + strand at 1624.842 kb on + strand at 1624.842 kb on + strand at 1624.843 kb on + strand at 1624.851 kb on - strand at 1624.855 kb on - strand at 1624.856 kb on - strand at 1624.863 kb on + strand at 1624.923 kb on - strand at 1624.923 kb on - strand at 1625.019 kb on + strand, within MPMX20_01551 at 1625.027 kb on - strand, within MPMX20_01551 at 1625.034 kb on - strand, within MPMX20_01551 at 1625.061 kb on + strand, within MPMX20_01551 at 1625.061 kb on + strand, within MPMX20_01551 at 1625.061 kb on + strand, within MPMX20_01551 at 1625.069 kb on - strand, within MPMX20_01551 at 1625.069 kb on - strand, within MPMX20_01551 at 1625.069 kb on - strand, within MPMX20_01551 at 1625.069 kb on - strand, within MPMX20_01551 at 1625.071 kb on + strand, within MPMX20_01551 at 1625.074 kb on - strand, within MPMX20_01551 at 1625.082 kb on - strand, within MPMX20_01551 at 1625.272 kb on - strand, within MPMX20_01551 at 1625.285 kb on - strand, within MPMX20_01551 at 1625.321 kb on + strand, within MPMX20_01551 at 1625.329 kb on - strand, within MPMX20_01551 at 1625.329 kb on - strand, within MPMX20_01551 at 1625.349 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 1,622,504 + MPMX20_01549 0.57 -0.1 1,622,534 + MPMX20_01549 0.59 -2.4 1,622,534 - MPMX20_01549 0.59 -0.3 1,622,540 - MPMX20_01549 0.59 -1.7 1,622,873 + MPMX20_01549 0.78 +4.5 1,622,881 - MPMX20_01549 0.79 -0.9 1,622,913 - MPMX20_01549 0.80 +0.6 1,623,053 + MPMX20_01549 0.88 -0.4 1,623,150 - -1.1 1,623,223 - +1.2 1,623,228 + +1.1 1,623,578 - MPMX20_01550 0.21 +0.9 1,623,670 + MPMX20_01550 0.30 -2.1 1,623,791 - MPMX20_01550 0.42 -2.0 1,623,835 - MPMX20_01550 0.46 -1.4 1,624,267 + MPMX20_01550 0.90 +0.0 1,624,267 + MPMX20_01550 0.90 -0.9 1,624,267 + MPMX20_01550 0.90 -2.1 1,624,267 + MPMX20_01550 0.90 +0.3 1,624,275 - -2.3 1,624,275 - -0.4 1,624,275 - -1.9 1,624,323 + -1.6 1,624,323 + -0.9 1,624,323 + +0.3 1,624,325 + -0.7 1,624,333 - -1.2 1,624,336 + -0.7 1,624,343 - -0.1 1,624,454 - -0.5 1,624,467 + -1.3 1,624,524 - +0.6 1,624,526 - -1.5 1,624,583 + -0.0 1,624,647 - -0.6 1,624,695 + -1.7 1,624,716 - -0.0 1,624,819 + -0.7 1,624,819 + +0.7 1,624,819 + +0.1 1,624,827 - +0.4 1,624,827 - +0.4 1,624,831 + -0.4 1,624,832 - +0.6 1,624,839 - -0.6 1,624,841 + -0.8 1,624,841 + +1.2 1,624,841 + -0.1 1,624,842 + +0.6 1,624,842 + +0.8 1,624,843 + +0.4 1,624,851 - -1.4 1,624,855 - +0.5 1,624,856 - -0.4 1,624,863 + +1.2 1,624,923 - +0.1 1,624,923 - -1.1 1,625,019 + MPMX20_01551 0.27 +0.1 1,625,027 - MPMX20_01551 0.29 +0.1 1,625,034 - MPMX20_01551 0.30 +0.1 1,625,061 + MPMX20_01551 0.36 +0.5 1,625,061 + MPMX20_01551 0.36 -0.1 1,625,061 + MPMX20_01551 0.36 +0.6 1,625,069 - MPMX20_01551 0.37 +1.3 1,625,069 - MPMX20_01551 0.37 -1.0 1,625,069 - MPMX20_01551 0.37 -1.1 1,625,069 - MPMX20_01551 0.37 +1.6 1,625,071 + MPMX20_01551 0.38 +0.6 1,625,074 - MPMX20_01551 0.38 -1.4 1,625,082 - MPMX20_01551 0.40 +0.2 1,625,272 - MPMX20_01551 0.78 -1.7 1,625,285 - MPMX20_01551 0.81 -0.1 1,625,321 + MPMX20_01551 0.88 +0.5 1,625,329 - MPMX20_01551 0.90 -0.4 1,625,329 - MPMX20_01551 0.90 +0.7 1,625,349 + +0.7
Or see this region's nucleotide sequence