Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01548 and MPMX20_01549 overlap by 1 nucleotides MPMX20_01549 and MPMX20_01550 are separated by 114 nucleotides
MPMX20_01548: MPMX20_01548 - putative ABC transporter ATP-binding/permease protein, at 1,619,770 to 1,621,491
_01548
MPMX20_01549: MPMX20_01549 - ATP-binding/permease protein CydD, at 1,621,491 to 1,623,257
_01549
MPMX20_01550: MPMX20_01550 - Thioredoxin reductase, at 1,623,372 to 1,624,367
_01550
Position (kb)
1621
1622
1623
1624 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1620.517 kb on - strand, within MPMX20_01548 at 1620.523 kb on - strand, within MPMX20_01548 at 1620.576 kb on + strand, within MPMX20_01548 at 1620.688 kb on + strand, within MPMX20_01548 at 1620.706 kb on - strand, within MPMX20_01548 at 1620.713 kb on - strand, within MPMX20_01548 at 1620.773 kb on - strand, within MPMX20_01548 at 1620.994 kb on - strand, within MPMX20_01548 at 1620.994 kb on - strand, within MPMX20_01548 at 1621.140 kb on - strand, within MPMX20_01548 at 1621.177 kb on + strand, within MPMX20_01548 at 1621.185 kb on - strand, within MPMX20_01548 at 1621.327 kb on + strand at 1621.397 kb on - strand at 1621.429 kb on + strand at 1621.482 kb on - strand at 1621.489 kb on + strand at 1621.636 kb on - strand at 1621.689 kb on - strand, within MPMX20_01549 at 1621.694 kb on + strand, within MPMX20_01549 at 1621.750 kb on + strand, within MPMX20_01549 at 1621.758 kb on - strand, within MPMX20_01549 at 1621.780 kb on + strand, within MPMX20_01549 at 1621.780 kb on + strand, within MPMX20_01549 at 1621.788 kb on - strand, within MPMX20_01549 at 1622.212 kb on - strand, within MPMX20_01549 at 1622.212 kb on - strand, within MPMX20_01549 at 1622.504 kb on + strand, within MPMX20_01549 at 1622.534 kb on + strand, within MPMX20_01549 at 1622.534 kb on - strand, within MPMX20_01549 at 1622.540 kb on - strand, within MPMX20_01549 at 1622.873 kb on + strand, within MPMX20_01549 at 1622.881 kb on - strand, within MPMX20_01549 at 1622.913 kb on - strand, within MPMX20_01549 at 1623.053 kb on + strand, within MPMX20_01549 at 1623.150 kb on - strand at 1623.223 kb on - strand at 1623.228 kb on + strand at 1623.578 kb on - strand, within MPMX20_01550 at 1623.670 kb on + strand, within MPMX20_01550 at 1623.791 kb on - strand, within MPMX20_01550 at 1623.835 kb on - strand, within MPMX20_01550
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 1,620,517 - MPMX20_01548 0.43 -0.8 1,620,523 - MPMX20_01548 0.44 -1.9 1,620,576 + MPMX20_01548 0.47 +0.5 1,620,688 + MPMX20_01548 0.53 -1.1 1,620,706 - MPMX20_01548 0.54 -1.3 1,620,713 - MPMX20_01548 0.55 +1.9 1,620,773 - MPMX20_01548 0.58 +2.2 1,620,994 - MPMX20_01548 0.71 +0.9 1,620,994 - MPMX20_01548 0.71 -0.5 1,621,140 - MPMX20_01548 0.80 -0.2 1,621,177 + MPMX20_01548 0.82 +1.6 1,621,185 - MPMX20_01548 0.82 -1.5 1,621,327 + -1.9 1,621,397 - -1.5 1,621,429 + -1.5 1,621,482 - +0.9 1,621,489 + +0.3 1,621,636 - +0.7 1,621,689 - MPMX20_01549 0.11 -0.9 1,621,694 + MPMX20_01549 0.11 -1.8 1,621,750 + MPMX20_01549 0.15 -1.7 1,621,758 - MPMX20_01549 0.15 -0.4 1,621,780 + MPMX20_01549 0.16 +1.0 1,621,780 + MPMX20_01549 0.16 -1.1 1,621,788 - MPMX20_01549 0.17 -0.1 1,622,212 - MPMX20_01549 0.41 +0.1 1,622,212 - MPMX20_01549 0.41 -1.1 1,622,504 + MPMX20_01549 0.57 -0.1 1,622,534 + MPMX20_01549 0.59 -2.4 1,622,534 - MPMX20_01549 0.59 -0.3 1,622,540 - MPMX20_01549 0.59 -1.7 1,622,873 + MPMX20_01549 0.78 +4.5 1,622,881 - MPMX20_01549 0.79 -0.9 1,622,913 - MPMX20_01549 0.80 +0.6 1,623,053 + MPMX20_01549 0.88 -0.4 1,623,150 - -1.1 1,623,223 - +1.2 1,623,228 + +1.1 1,623,578 - MPMX20_01550 0.21 +0.9 1,623,670 + MPMX20_01550 0.30 -2.1 1,623,791 - MPMX20_01550 0.42 -2.0 1,623,835 - MPMX20_01550 0.46 -1.4
Or see this region's nucleotide sequence