Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01432 and MPMX20_01433 are separated by 115 nucleotides MPMX20_01433 and MPMX20_01434 are separated by 285 nucleotides MPMX20_01434 and MPMX20_01435 are separated by 117 nucleotides
MPMX20_01432: MPMX20_01432 - putative protein YbiB, at 1,497,211 to 1,498,173
_01432
MPMX20_01433: MPMX20_01433 - putative protein McbA, at 1,498,289 to 1,498,549
_01433
MPMX20_01434: MPMX20_01434 - putative protein YbiI, at 1,498,835 to 1,499,101
_01434
MPMX20_01435: MPMX20_01435 - putative protein McbA, at 1,499,219 to 1,499,485
_01435
Position (kb)
1498
1499 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1497.294 kb on + strand at 1497.294 kb on - strand at 1497.300 kb on - strand at 1497.304 kb on - strand at 1497.306 kb on + strand at 1497.309 kb on - strand, within MPMX20_01432 at 1497.314 kb on - strand, within MPMX20_01432 at 1497.314 kb on - strand, within MPMX20_01432 at 1497.314 kb on - strand, within MPMX20_01432 at 1497.319 kb on - strand, within MPMX20_01432 at 1497.319 kb on - strand, within MPMX20_01432 at 1497.319 kb on - strand, within MPMX20_01432 at 1497.324 kb on - strand, within MPMX20_01432 at 1497.326 kb on + strand, within MPMX20_01432 at 1497.355 kb on - strand, within MPMX20_01432 at 1497.375 kb on - strand, within MPMX20_01432 at 1497.377 kb on + strand, within MPMX20_01432 at 1497.419 kb on - strand, within MPMX20_01432 at 1497.419 kb on - strand, within MPMX20_01432 at 1497.425 kb on - strand, within MPMX20_01432 at 1497.471 kb on + strand, within MPMX20_01432 at 1497.492 kb on + strand, within MPMX20_01432 at 1497.498 kb on + strand, within MPMX20_01432 at 1497.500 kb on - strand, within MPMX20_01432 at 1497.500 kb on - strand, within MPMX20_01432 at 1497.540 kb on + strand, within MPMX20_01432 at 1497.568 kb on + strand, within MPMX20_01432 at 1497.568 kb on + strand, within MPMX20_01432 at 1497.568 kb on + strand, within MPMX20_01432 at 1497.568 kb on + strand, within MPMX20_01432 at 1497.571 kb on - strand, within MPMX20_01432 at 1497.645 kb on + strand, within MPMX20_01432 at 1497.647 kb on - strand, within MPMX20_01432 at 1497.670 kb on + strand, within MPMX20_01432 at 1497.670 kb on + strand, within MPMX20_01432 at 1497.678 kb on - strand, within MPMX20_01432 at 1497.681 kb on + strand, within MPMX20_01432 at 1497.796 kb on + strand, within MPMX20_01432 at 1497.898 kb on - strand, within MPMX20_01432 at 1497.903 kb on + strand, within MPMX20_01432 at 1497.916 kb on - strand, within MPMX20_01432 at 1497.926 kb on + strand, within MPMX20_01432 at 1497.933 kb on + strand, within MPMX20_01432 at 1497.934 kb on - strand, within MPMX20_01432 at 1497.979 kb on + strand, within MPMX20_01432 at 1498.036 kb on - strand, within MPMX20_01432 at 1498.040 kb on + strand, within MPMX20_01432 at 1498.040 kb on + strand, within MPMX20_01432 at 1498.040 kb on + strand, within MPMX20_01432 at 1498.228 kb on - strand at 1498.238 kb on + strand at 1498.239 kb on + strand at 1498.247 kb on - strand at 1498.254 kb on + strand at 1498.257 kb on - strand at 1498.257 kb on - strand at 1498.259 kb on + strand at 1498.268 kb on - strand at 1498.270 kb on + strand at 1498.303 kb on + strand at 1498.303 kb on + strand at 1498.311 kb on - strand at 1498.311 kb on - strand at 1498.340 kb on + strand, within MPMX20_01433 at 1498.340 kb on + strand, within MPMX20_01433 at 1498.341 kb on - strand, within MPMX20_01433 at 1498.403 kb on + strand, within MPMX20_01433 at 1498.420 kb on - strand, within MPMX20_01433 at 1498.513 kb on + strand, within MPMX20_01433 at 1498.521 kb on - strand, within MPMX20_01433 at 1498.542 kb on - strand at 1498.649 kb on - strand at 1498.719 kb on - strand at 1498.799 kb on - strand at 1498.868 kb on + strand, within MPMX20_01434 at 1498.952 kb on - strand, within MPMX20_01434 at 1498.952 kb on - strand, within MPMX20_01434 at 1498.989 kb on - strand, within MPMX20_01434 at 1499.098 kb on - strand at 1499.102 kb on + strand at 1499.108 kb on + strand at 1499.108 kb on + strand at 1499.110 kb on - strand at 1499.166 kb on - strand at 1499.176 kb on - strand at 1499.178 kb on + strand at 1499.283 kb on + strand, within MPMX20_01435 at 1499.283 kb on + strand, within MPMX20_01435 at 1499.291 kb on - strand, within MPMX20_01435 at 1499.291 kb on - strand, within MPMX20_01435 at 1499.321 kb on + strand, within MPMX20_01435 at 1499.331 kb on + strand, within MPMX20_01435 at 1499.332 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.381 kb on - strand, within MPMX20_01435 at 1499.381 kb on - strand, within MPMX20_01435 at 1499.381 kb on - strand, within MPMX20_01435 at 1499.381 kb on - strand, within MPMX20_01435 at 1499.381 kb on - strand, within MPMX20_01435 at 1499.469 kb on - strand at 1499.495 kb on - strand at 1499.502 kb on + strand at 1499.542 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 1,497,294 + +0.1 1,497,294 - -1.4 1,497,300 - +0.6 1,497,304 - +0.4 1,497,306 + -0.6 1,497,309 - MPMX20_01432 0.10 +1.6 1,497,314 - MPMX20_01432 0.11 -0.9 1,497,314 - MPMX20_01432 0.11 -0.7 1,497,314 - MPMX20_01432 0.11 -0.6 1,497,319 - MPMX20_01432 0.11 -0.6 1,497,319 - MPMX20_01432 0.11 +0.4 1,497,319 - MPMX20_01432 0.11 -0.2 1,497,324 - MPMX20_01432 0.12 +1.1 1,497,326 + MPMX20_01432 0.12 -1.1 1,497,355 - MPMX20_01432 0.15 -0.9 1,497,375 - MPMX20_01432 0.17 +0.1 1,497,377 + MPMX20_01432 0.17 +1.0 1,497,419 - MPMX20_01432 0.22 +0.3 1,497,419 - MPMX20_01432 0.22 +0.7 1,497,425 - MPMX20_01432 0.22 +0.7 1,497,471 + MPMX20_01432 0.27 -0.3 1,497,492 + MPMX20_01432 0.29 +0.0 1,497,498 + MPMX20_01432 0.30 +0.5 1,497,500 - MPMX20_01432 0.30 +0.3 1,497,500 - MPMX20_01432 0.30 +0.2 1,497,540 + MPMX20_01432 0.34 -0.8 1,497,568 + MPMX20_01432 0.37 -0.1 1,497,568 + MPMX20_01432 0.37 -0.2 1,497,568 + MPMX20_01432 0.37 +1.2 1,497,568 + MPMX20_01432 0.37 +0.5 1,497,571 - MPMX20_01432 0.37 -0.4 1,497,645 + MPMX20_01432 0.45 -0.2 1,497,647 - MPMX20_01432 0.45 -1.1 1,497,670 + MPMX20_01432 0.48 -0.6 1,497,670 + MPMX20_01432 0.48 -0.9 1,497,678 - MPMX20_01432 0.48 +0.8 1,497,681 + MPMX20_01432 0.49 -1.1 1,497,796 + MPMX20_01432 0.61 -0.8 1,497,898 - MPMX20_01432 0.71 -0.1 1,497,903 + MPMX20_01432 0.72 +0.1 1,497,916 - MPMX20_01432 0.73 +0.4 1,497,926 + MPMX20_01432 0.74 +0.5 1,497,933 + MPMX20_01432 0.75 +0.2 1,497,934 - MPMX20_01432 0.75 -2.0 1,497,979 + MPMX20_01432 0.80 +0.1 1,498,036 - MPMX20_01432 0.86 +0.5 1,498,040 + MPMX20_01432 0.86 -1.6 1,498,040 + MPMX20_01432 0.86 -0.9 1,498,040 + MPMX20_01432 0.86 -1.0 1,498,228 - +0.9 1,498,238 + +0.6 1,498,239 + +0.0 1,498,247 - -1.4 1,498,254 + +0.8 1,498,257 - -0.2 1,498,257 - -0.1 1,498,259 + -0.5 1,498,268 - -0.2 1,498,270 + +0.9 1,498,303 + -0.2 1,498,303 + -2.0 1,498,311 - +0.2 1,498,311 - -0.0 1,498,340 + MPMX20_01433 0.20 -2.1 1,498,340 + MPMX20_01433 0.20 -1.1 1,498,341 - MPMX20_01433 0.20 -0.8 1,498,403 + MPMX20_01433 0.44 -0.8 1,498,420 - MPMX20_01433 0.50 -0.1 1,498,513 + MPMX20_01433 0.86 -0.9 1,498,521 - MPMX20_01433 0.89 -1.9 1,498,542 - -2.5 1,498,649 - -0.5 1,498,719 - +0.9 1,498,799 - +0.3 1,498,868 + MPMX20_01434 0.12 +0.8 1,498,952 - MPMX20_01434 0.44 -0.5 1,498,952 - MPMX20_01434 0.44 -0.0 1,498,989 - MPMX20_01434 0.58 -0.1 1,499,098 - -0.6 1,499,102 + -1.3 1,499,108 + +0.8 1,499,108 + -2.9 1,499,110 - -0.4 1,499,166 - +0.5 1,499,176 - -1.5 1,499,178 + +0.4 1,499,283 + MPMX20_01435 0.24 -0.6 1,499,283 + MPMX20_01435 0.24 +1.6 1,499,291 - MPMX20_01435 0.27 -2.5 1,499,291 - MPMX20_01435 0.27 -0.4 1,499,321 + MPMX20_01435 0.38 -0.0 1,499,331 + MPMX20_01435 0.42 -1.4 1,499,332 + MPMX20_01435 0.42 +0.2 1,499,373 + MPMX20_01435 0.58 +0.9 1,499,373 + MPMX20_01435 0.58 +0.9 1,499,373 + MPMX20_01435 0.58 +0.0 1,499,373 + MPMX20_01435 0.58 -0.6 1,499,373 + MPMX20_01435 0.58 -0.4 1,499,373 + MPMX20_01435 0.58 -0.0 1,499,373 + MPMX20_01435 0.58 +0.3 1,499,373 + MPMX20_01435 0.58 -0.7 1,499,373 + MPMX20_01435 0.58 +0.0 1,499,373 + MPMX20_01435 0.58 +0.6 1,499,373 + MPMX20_01435 0.58 +0.9 1,499,373 + MPMX20_01435 0.58 -0.2 1,499,381 - MPMX20_01435 0.61 +0.7 1,499,381 - MPMX20_01435 0.61 +0.5 1,499,381 - MPMX20_01435 0.61 +0.2 1,499,381 - MPMX20_01435 0.61 -1.8 1,499,381 - MPMX20_01435 0.61 +0.5 1,499,469 - +2.2 1,499,495 - -0.1 1,499,502 + -0.1 1,499,542 - +1.1
Or see this region's nucleotide sequence