Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01368 and MPMX20_01369 are separated by 130 nucleotides MPMX20_01369 and MPMX20_01370 are separated by 35 nucleotides MPMX20_01370 and MPMX20_01371 are separated by 9 nucleotides
MPMX20_01368: MPMX20_01368 - hypothetical protein, at 1,434,453 to 1,435,742
_01368
MPMX20_01369: MPMX20_01369 - Tol-Pal system protein TolB, at 1,435,873 to 1,437,165
_01369
MPMX20_01370: MPMX20_01370 - Peptidoglycan-associated lipoprotein, at 1,437,201 to 1,437,722
_01370
MPMX20_01371: MPMX20_01371 - Cell division coordinator CpoB, at 1,437,732 to 1,438,526
_01371
Position (kb)
1435
1436
1437
1438 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1434.912 kb on + strand, within MPMX20_01368 at 1434.985 kb on - strand, within MPMX20_01368 at 1435.161 kb on + strand, within MPMX20_01368 at 1435.370 kb on - strand, within MPMX20_01368 at 1435.450 kb on - strand, within MPMX20_01368 at 1435.518 kb on + strand, within MPMX20_01368 at 1435.620 kb on - strand at 1435.620 kb on - strand at 1435.620 kb on - strand at 1435.627 kb on + strand at 1435.655 kb on - strand at 1435.655 kb on - strand at 1435.655 kb on - strand at 1435.747 kb on - strand at 1435.775 kb on + strand at 1435.851 kb on - strand at 1435.851 kb on - strand at 1435.977 kb on + strand at 1436.058 kb on + strand, within MPMX20_01369 at 1436.181 kb on + strand, within MPMX20_01369 at 1436.181 kb on + strand, within MPMX20_01369 at 1436.181 kb on + strand, within MPMX20_01369 at 1436.189 kb on - strand, within MPMX20_01369 at 1436.189 kb on - strand, within MPMX20_01369 at 1436.308 kb on - strand, within MPMX20_01369 at 1436.353 kb on + strand, within MPMX20_01369 at 1436.388 kb on + strand, within MPMX20_01369 at 1436.388 kb on + strand, within MPMX20_01369 at 1436.391 kb on - strand, within MPMX20_01369 at 1436.396 kb on - strand, within MPMX20_01369 at 1436.411 kb on - strand, within MPMX20_01369 at 1436.426 kb on - strand, within MPMX20_01369 at 1436.456 kb on - strand, within MPMX20_01369 at 1436.478 kb on + strand, within MPMX20_01369 at 1436.490 kb on - strand, within MPMX20_01369 at 1436.504 kb on + strand, within MPMX20_01369 at 1436.504 kb on + strand, within MPMX20_01369 at 1436.504 kb on + strand, within MPMX20_01369 at 1436.504 kb on + strand, within MPMX20_01369 at 1436.504 kb on + strand, within MPMX20_01369 at 1436.512 kb on - strand, within MPMX20_01369 at 1436.512 kb on - strand, within MPMX20_01369 at 1436.545 kb on + strand, within MPMX20_01369 at 1436.610 kb on - strand, within MPMX20_01369 at 1436.658 kb on + strand, within MPMX20_01369 at 1436.666 kb on - strand, within MPMX20_01369 at 1436.680 kb on - strand, within MPMX20_01369 at 1436.839 kb on + strand, within MPMX20_01369 at 1436.862 kb on - strand, within MPMX20_01369 at 1436.892 kb on - strand, within MPMX20_01369 at 1436.921 kb on + strand, within MPMX20_01369 at 1437.042 kb on - strand at 1437.048 kb on - strand at 1437.050 kb on + strand at 1437.065 kb on + strand at 1437.130 kb on - strand at 1437.140 kb on - strand at 1437.140 kb on - strand at 1437.311 kb on + strand, within MPMX20_01370 at 1437.314 kb on - strand, within MPMX20_01370 at 1437.410 kb on + strand, within MPMX20_01370 at 1437.442 kb on + strand, within MPMX20_01370 at 1437.538 kb on + strand, within MPMX20_01370 at 1437.602 kb on + strand, within MPMX20_01370 at 1437.626 kb on + strand, within MPMX20_01370 at 1437.663 kb on + strand, within MPMX20_01370 at 1437.776 kb on + strand at 1437.820 kb on - strand, within MPMX20_01371 at 1437.883 kb on + strand, within MPMX20_01371 at 1438.030 kb on - strand, within MPMX20_01371 at 1438.033 kb on - strand, within MPMX20_01371 at 1438.135 kb on + strand, within MPMX20_01371 at 1438.148 kb on - strand, within MPMX20_01371
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 1,434,912 + MPMX20_01368 0.36 -3.0 1,434,985 - MPMX20_01368 0.41 -4.3 1,435,161 + MPMX20_01368 0.55 -2.6 1,435,370 - MPMX20_01368 0.71 -4.7 1,435,450 - MPMX20_01368 0.77 -1.2 1,435,518 + MPMX20_01368 0.83 +1.0 1,435,620 - -2.3 1,435,620 - -2.8 1,435,620 - +0.2 1,435,627 + -1.9 1,435,655 - -2.9 1,435,655 - -1.3 1,435,655 - +1.6 1,435,747 - +2.1 1,435,775 + +0.1 1,435,851 - -0.6 1,435,851 - -0.4 1,435,977 + -2.5 1,436,058 + MPMX20_01369 0.14 -0.2 1,436,181 + MPMX20_01369 0.24 -2.4 1,436,181 + MPMX20_01369 0.24 -0.0 1,436,181 + MPMX20_01369 0.24 -1.1 1,436,189 - MPMX20_01369 0.24 -2.6 1,436,189 - MPMX20_01369 0.24 -3.7 1,436,308 - MPMX20_01369 0.34 -1.4 1,436,353 + MPMX20_01369 0.37 -3.8 1,436,388 + MPMX20_01369 0.40 -3.9 1,436,388 + MPMX20_01369 0.40 -0.0 1,436,391 - MPMX20_01369 0.40 -2.2 1,436,396 - MPMX20_01369 0.40 +0.4 1,436,411 - MPMX20_01369 0.42 -3.1 1,436,426 - MPMX20_01369 0.43 -2.3 1,436,456 - MPMX20_01369 0.45 -2.9 1,436,478 + MPMX20_01369 0.47 -2.0 1,436,490 - MPMX20_01369 0.48 -2.9 1,436,504 + MPMX20_01369 0.49 -4.3 1,436,504 + MPMX20_01369 0.49 -3.1 1,436,504 + MPMX20_01369 0.49 -3.4 1,436,504 + MPMX20_01369 0.49 -0.3 1,436,504 + MPMX20_01369 0.49 -3.3 1,436,512 - MPMX20_01369 0.49 -1.0 1,436,512 - MPMX20_01369 0.49 -2.5 1,436,545 + MPMX20_01369 0.52 -3.0 1,436,610 - MPMX20_01369 0.57 -3.8 1,436,658 + MPMX20_01369 0.61 -2.0 1,436,666 - MPMX20_01369 0.61 -4.0 1,436,680 - MPMX20_01369 0.62 -2.1 1,436,839 + MPMX20_01369 0.75 -1.9 1,436,862 - MPMX20_01369 0.76 -0.8 1,436,892 - MPMX20_01369 0.79 -0.6 1,436,921 + MPMX20_01369 0.81 -0.8 1,437,042 - -1.7 1,437,048 - +1.3 1,437,050 + -2.4 1,437,065 + -1.8 1,437,130 - -0.8 1,437,140 - -1.7 1,437,140 - -2.3 1,437,311 + MPMX20_01370 0.21 -0.4 1,437,314 - MPMX20_01370 0.22 -3.4 1,437,410 + MPMX20_01370 0.40 -1.7 1,437,442 + MPMX20_01370 0.46 -4.2 1,437,538 + MPMX20_01370 0.65 -3.4 1,437,602 + MPMX20_01370 0.77 +0.2 1,437,626 + MPMX20_01370 0.81 -4.2 1,437,663 + MPMX20_01370 0.89 -3.8 1,437,776 + +0.3 1,437,820 - MPMX20_01371 0.11 +0.4 1,437,883 + MPMX20_01371 0.19 +0.4 1,438,030 - MPMX20_01371 0.37 +0.1 1,438,033 - MPMX20_01371 0.38 +0.4 1,438,135 + MPMX20_01371 0.51 -0.6 1,438,148 - MPMX20_01371 0.52 -0.4
Or see this region's nucleotide sequence