Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01362 and MPMX20_01363 are separated by 14 nucleotides MPMX20_01363 and MPMX20_01364 overlap by 1 nucleotides MPMX20_01364 and MPMX20_01365 are separated by 148 nucleotides MPMX20_01365 and MPMX20_01366 overlap by 4 nucleotides MPMX20_01366 and MPMX20_01367 are separated by 3 nucleotides MPMX20_01367 and MPMX20_01368 are separated by 28 nucleotides
MPMX20_01362: MPMX20_01362 - Cytochrome bd-I ubiquinol oxidase subunit 2, at 1,431,193 to 1,432,332
_01362
MPMX20_01363: MPMX20_01363 - Cytochrome bd-I ubiquinol oxidase subunit X, at 1,432,347 to 1,432,460
_01363
MPMX20_01364: MPMX20_01364 - hypothetical protein, at 1,432,460 to 1,432,750
_01364
MPMX20_01365: MPMX20_01365 - Acyl-CoA thioester hydrolase YbgC, at 1,432,899 to 1,433,303
_01365
MPMX20_01366: MPMX20_01366 - Tol-Pal system protein TolQ, at 1,433,300 to 1,433,992
_01366
MPMX20_01367: MPMX20_01367 - Tol-Pal system protein TolR, at 1,433,996 to 1,434,424
_01367
MPMX20_01368: MPMX20_01368 - hypothetical protein, at 1,434,453 to 1,435,742
_01368
Position (kb)
1433
1434 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1432.324 kb on - strand at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.385 kb on - strand, within MPMX20_01363 at 1432.385 kb on - strand, within MPMX20_01363 at 1432.385 kb on - strand, within MPMX20_01363 at 1432.385 kb on - strand, within MPMX20_01363 at 1432.385 kb on - strand, within MPMX20_01363 at 1432.407 kb on + strand, within MPMX20_01363 at 1432.407 kb on + strand, within MPMX20_01363 at 1432.415 kb on - strand, within MPMX20_01363 at 1432.415 kb on - strand, within MPMX20_01363 at 1432.424 kb on + strand, within MPMX20_01363 at 1432.432 kb on + strand, within MPMX20_01363 at 1432.432 kb on - strand, within MPMX20_01363 at 1432.433 kb on + strand, within MPMX20_01363 at 1432.433 kb on + strand, within MPMX20_01363 at 1432.441 kb on - strand, within MPMX20_01363 at 1432.441 kb on - strand, within MPMX20_01363 at 1432.503 kb on + strand, within MPMX20_01364 at 1432.544 kb on + strand, within MPMX20_01364 at 1432.562 kb on - strand, within MPMX20_01364 at 1432.600 kb on - strand, within MPMX20_01364 at 1432.645 kb on - strand, within MPMX20_01364 at 1432.645 kb on - strand, within MPMX20_01364 at 1432.645 kb on - strand, within MPMX20_01364 at 1432.658 kb on - strand, within MPMX20_01364 at 1432.725 kb on - strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.781 kb on + strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.866 kb on - strand at 1432.911 kb on - strand at 1432.944 kb on - strand, within MPMX20_01365 at 1432.944 kb on - strand, within MPMX20_01365 at 1433.008 kb on + strand, within MPMX20_01365 at 1433.045 kb on + strand, within MPMX20_01365 at 1433.053 kb on - strand, within MPMX20_01365 at 1433.064 kb on + strand, within MPMX20_01365 at 1433.161 kb on + strand, within MPMX20_01365 at 1433.213 kb on - strand, within MPMX20_01365 at 1433.236 kb on + strand, within MPMX20_01365 at 1433.244 kb on - strand, within MPMX20_01365 at 1433.244 kb on - strand, within MPMX20_01365 at 1433.297 kb on + strand at 1433.483 kb on - strand, within MPMX20_01366 at 1433.483 kb on - strand, within MPMX20_01366 at 1433.725 kb on + strand, within MPMX20_01366 at 1433.725 kb on + strand, within MPMX20_01366 at 1433.775 kb on - strand, within MPMX20_01366 at 1433.797 kb on - strand, within MPMX20_01366 at 1433.870 kb on + strand, within MPMX20_01366 at 1433.878 kb on - strand, within MPMX20_01366 at 1433.879 kb on + strand, within MPMX20_01366 at 1433.880 kb on + strand, within MPMX20_01366 at 1433.987 kb on + strand at 1433.995 kb on - strand at 1434.041 kb on - strand, within MPMX20_01367 at 1434.108 kb on + strand, within MPMX20_01367 at 1434.197 kb on - strand, within MPMX20_01367 at 1434.204 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.250 kb on + strand, within MPMX20_01367 at 1434.265 kb on + strand, within MPMX20_01367 at 1434.265 kb on + strand, within MPMX20_01367 at 1434.287 kb on + strand, within MPMX20_01367 at 1434.370 kb on - strand, within MPMX20_01367 at 1434.490 kb on - strand at 1434.490 kb on - strand at 1434.539 kb on + strand at 1434.678 kb on - strand, within MPMX20_01368 at 1434.726 kb on - strand, within MPMX20_01368 at 1434.765 kb on - strand, within MPMX20_01368 at 1434.861 kb on + strand, within MPMX20_01368 at 1434.912 kb on + strand, within MPMX20_01368 at 1434.985 kb on - strand, within MPMX20_01368
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 1,432,324 - -1.2 1,432,377 + MPMX20_01363 0.26 -0.8 1,432,377 + MPMX20_01363 0.26 +0.6 1,432,377 + MPMX20_01363 0.26 +1.0 1,432,377 + MPMX20_01363 0.26 -1.0 1,432,377 + MPMX20_01363 0.26 +0.7 1,432,377 + MPMX20_01363 0.26 -0.9 1,432,377 + MPMX20_01363 0.26 +0.1 1,432,377 + MPMX20_01363 0.26 -0.4 1,432,385 - MPMX20_01363 0.33 -0.6 1,432,385 - MPMX20_01363 0.33 -0.4 1,432,385 - MPMX20_01363 0.33 -1.4 1,432,385 - MPMX20_01363 0.33 +0.5 1,432,385 - MPMX20_01363 0.33 -1.2 1,432,407 + MPMX20_01363 0.53 -0.5 1,432,407 + MPMX20_01363 0.53 -0.4 1,432,415 - MPMX20_01363 0.60 -0.2 1,432,415 - MPMX20_01363 0.60 +0.3 1,432,424 + MPMX20_01363 0.68 +2.2 1,432,432 + MPMX20_01363 0.75 +0.4 1,432,432 - MPMX20_01363 0.75 +0.5 1,432,433 + MPMX20_01363 0.75 +0.3 1,432,433 + MPMX20_01363 0.75 -0.3 1,432,441 - MPMX20_01363 0.82 +1.3 1,432,441 - MPMX20_01363 0.82 +0.0 1,432,503 + MPMX20_01364 0.15 +1.1 1,432,544 + MPMX20_01364 0.29 +1.6 1,432,562 - MPMX20_01364 0.35 +1.5 1,432,600 - MPMX20_01364 0.48 -2.3 1,432,645 - MPMX20_01364 0.64 -1.0 1,432,645 - MPMX20_01364 0.64 +1.8 1,432,645 - MPMX20_01364 0.64 -1.6 1,432,658 - MPMX20_01364 0.68 +0.5 1,432,725 - +0.7 1,432,776 + +1.0 1,432,776 + +0.9 1,432,776 + -0.4 1,432,776 + -0.4 1,432,776 + -1.1 1,432,776 + +0.6 1,432,776 + +0.4 1,432,776 + +0.3 1,432,776 + -0.2 1,432,776 + -0.1 1,432,776 + -0.6 1,432,776 + +0.4 1,432,776 + -0.9 1,432,776 + -1.5 1,432,776 + +0.0 1,432,776 + -0.2 1,432,776 + -2.6 1,432,776 + -0.1 1,432,781 + +0.0 1,432,784 - +0.1 1,432,784 - +0.2 1,432,784 - -0.5 1,432,784 - -0.1 1,432,784 - -0.8 1,432,784 - -0.4 1,432,784 - +2.0 1,432,784 - +0.7 1,432,784 - +0.4 1,432,784 - -0.4 1,432,784 - +1.0 1,432,784 - +0.3 1,432,784 - -1.3 1,432,784 - +0.9 1,432,784 - -0.6 1,432,784 - -0.1 1,432,784 - +0.2 1,432,784 - +2.5 1,432,784 - -0.1 1,432,866 - -3.1 1,432,911 - -0.5 1,432,944 - MPMX20_01365 0.11 -3.1 1,432,944 - MPMX20_01365 0.11 -1.6 1,433,008 + MPMX20_01365 0.27 +0.3 1,433,045 + MPMX20_01365 0.36 -1.8 1,433,053 - MPMX20_01365 0.38 -1.5 1,433,064 + MPMX20_01365 0.41 +0.2 1,433,161 + MPMX20_01365 0.65 +1.1 1,433,213 - MPMX20_01365 0.78 +0.1 1,433,236 + MPMX20_01365 0.83 -0.1 1,433,244 - MPMX20_01365 0.85 -3.1 1,433,244 - MPMX20_01365 0.85 -2.2 1,433,297 + -1.0 1,433,483 - MPMX20_01366 0.26 -0.4 1,433,483 - MPMX20_01366 0.26 -2.2 1,433,725 + MPMX20_01366 0.61 -3.5 1,433,725 + MPMX20_01366 0.61 -0.2 1,433,775 - MPMX20_01366 0.69 -1.9 1,433,797 - MPMX20_01366 0.72 -1.2 1,433,870 + MPMX20_01366 0.82 -4.4 1,433,878 - MPMX20_01366 0.83 -2.5 1,433,879 + MPMX20_01366 0.84 -1.0 1,433,880 + MPMX20_01366 0.84 -1.5 1,433,987 + -0.8 1,433,995 - -0.1 1,434,041 - MPMX20_01367 0.10 -2.2 1,434,108 + MPMX20_01367 0.26 -0.7 1,434,197 - MPMX20_01367 0.47 -3.7 1,434,204 + MPMX20_01367 0.48 -2.6 1,434,209 + MPMX20_01367 0.50 +1.4 1,434,209 + MPMX20_01367 0.50 -5.0 1,434,209 + MPMX20_01367 0.50 -3.9 1,434,209 + MPMX20_01367 0.50 -3.4 1,434,209 + MPMX20_01367 0.50 -1.6 1,434,217 - MPMX20_01367 0.52 -0.9 1,434,217 - MPMX20_01367 0.52 -0.8 1,434,217 - MPMX20_01367 0.52 -1.2 1,434,217 - MPMX20_01367 0.52 -1.7 1,434,217 - MPMX20_01367 0.52 -1.9 1,434,250 + MPMX20_01367 0.59 -1.9 1,434,265 + MPMX20_01367 0.63 -2.2 1,434,265 + MPMX20_01367 0.63 -1.5 1,434,287 + MPMX20_01367 0.68 -3.6 1,434,370 - MPMX20_01367 0.87 -0.6 1,434,490 - -2.4 1,434,490 - -1.9 1,434,539 + -3.6 1,434,678 - MPMX20_01368 0.17 -3.5 1,434,726 - MPMX20_01368 0.21 -1.3 1,434,765 - MPMX20_01368 0.24 -1.9 1,434,861 + MPMX20_01368 0.32 -2.2 1,434,912 + MPMX20_01368 0.36 -3.0 1,434,985 - MPMX20_01368 0.41 -4.3
Or see this region's nucleotide sequence