Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01354 and MPMX20_01355 are separated by 14 nucleotides MPMX20_01355 and MPMX20_01356 are separated by 85 nucleotides
MPMX20_01354: MPMX20_01354 - 2-oxoglutarate dehydrogenase E1 component, at 1,417,217 to 1,420,024
_01354
MPMX20_01355: MPMX20_01355 - Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, at 1,420,039 to 1,421,265
_01355
MPMX20_01356: MPMX20_01356 - Succinate--CoA ligase [ADP-forming] subunit beta, at 1,421,351 to 1,422,517
_01356
Position (kb)
1420
1421
1422 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1419.439 kb on + strand, within MPMX20_01354 at 1419.439 kb on + strand, within MPMX20_01354 at 1419.490 kb on + strand, within MPMX20_01354 at 1419.581 kb on + strand, within MPMX20_01354 at 1419.586 kb on + strand, within MPMX20_01354 at 1419.586 kb on + strand, within MPMX20_01354 at 1419.959 kb on + strand at 1419.992 kb on + strand at 1421.131 kb on + strand, within MPMX20_01355 at 1421.163 kb on + strand at 1421.348 kb on - strand at 1421.348 kb on - strand at 1421.424 kb on + strand at 1421.429 kb on + strand at 1421.432 kb on - strand at 1421.432 kb on - strand at 1421.432 kb on - strand at 1421.437 kb on - strand at 1421.488 kb on + strand, within MPMX20_01356 at 1421.526 kb on + strand, within MPMX20_01356 at 1421.526 kb on + strand, within MPMX20_01356 at 1421.534 kb on - strand, within MPMX20_01356 at 1421.693 kb on - strand, within MPMX20_01356 at 1421.769 kb on + strand, within MPMX20_01356 at 1421.935 kb on + strand, within MPMX20_01356 at 1421.961 kb on - strand, within MPMX20_01356 at 1421.966 kb on - strand, within MPMX20_01356 at 1422.009 kb on + strand, within MPMX20_01356 at 1422.063 kb on - strand, within MPMX20_01356 at 1422.094 kb on - strand, within MPMX20_01356 at 1422.095 kb on + strand, within MPMX20_01356 at 1422.100 kb on + strand, within MPMX20_01356 at 1422.113 kb on - strand, within MPMX20_01356 at 1422.149 kb on + strand, within MPMX20_01356 at 1422.149 kb on + strand, within MPMX20_01356 at 1422.174 kb on + strand, within MPMX20_01356 at 1422.174 kb on + strand, within MPMX20_01356 at 1422.184 kb on + strand, within MPMX20_01356 at 1422.222 kb on - strand, within MPMX20_01356 at 1422.230 kb on + strand, within MPMX20_01356 at 1422.238 kb on - strand, within MPMX20_01356
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 1,419,439 + MPMX20_01354 0.79 -2.2 1,419,439 + MPMX20_01354 0.79 -4.0 1,419,490 + MPMX20_01354 0.81 -0.6 1,419,581 + MPMX20_01354 0.84 -2.8 1,419,586 + MPMX20_01354 0.84 -1.7 1,419,586 + MPMX20_01354 0.84 -0.6 1,419,959 + -0.4 1,419,992 + -0.9 1,421,131 + MPMX20_01355 0.89 -2.4 1,421,163 + -1.9 1,421,348 - -0.8 1,421,348 - -0.7 1,421,424 + -1.8 1,421,429 + -2.9 1,421,432 - -0.4 1,421,432 - -0.8 1,421,432 - +0.0 1,421,437 - +0.5 1,421,488 + MPMX20_01356 0.12 -3.3 1,421,526 + MPMX20_01356 0.15 -0.1 1,421,526 + MPMX20_01356 0.15 +0.0 1,421,534 - MPMX20_01356 0.16 -0.5 1,421,693 - MPMX20_01356 0.29 -0.5 1,421,769 + MPMX20_01356 0.36 +0.4 1,421,935 + MPMX20_01356 0.50 -2.4 1,421,961 - MPMX20_01356 0.52 -1.1 1,421,966 - MPMX20_01356 0.53 +0.3 1,422,009 + MPMX20_01356 0.56 +1.0 1,422,063 - MPMX20_01356 0.61 -0.8 1,422,094 - MPMX20_01356 0.64 -1.6 1,422,095 + MPMX20_01356 0.64 -0.7 1,422,100 + MPMX20_01356 0.64 -1.2 1,422,113 - MPMX20_01356 0.65 -2.0 1,422,149 + MPMX20_01356 0.68 -0.2 1,422,149 + MPMX20_01356 0.68 -1.0 1,422,174 + MPMX20_01356 0.71 -1.6 1,422,174 + MPMX20_01356 0.71 -0.8 1,422,184 + MPMX20_01356 0.71 -2.7 1,422,222 - MPMX20_01356 0.75 -0.1 1,422,230 + MPMX20_01356 0.75 +0.7 1,422,238 - MPMX20_01356 0.76 -1.6
Or see this region's nucleotide sequence