Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01352 and MPMX20_01353 are separated by 15 nucleotides MPMX20_01353 and MPMX20_01354 are separated by 226 nucleotides MPMX20_01354 and MPMX20_01355 are separated by 14 nucleotides
MPMX20_01352: MPMX20_01352 - Succinate dehydrogenase flavoprotein subunit, at 1,414,492 to 1,416,258
_01352
MPMX20_01353: MPMX20_01353 - Succinate dehydrogenase iron-sulfur subunit, at 1,416,274 to 1,416,990
_01353
MPMX20_01354: MPMX20_01354 - 2-oxoglutarate dehydrogenase E1 component, at 1,417,217 to 1,420,024
_01354
MPMX20_01355: MPMX20_01355 - Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, at 1,420,039 to 1,421,265
_01355
Position (kb)
1417
1418
1419
1420
1421 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1416.386 kb on + strand, within MPMX20_01353 at 1416.394 kb on - strand, within MPMX20_01353 at 1416.446 kb on - strand, within MPMX20_01353 at 1416.492 kb on + strand, within MPMX20_01353 at 1416.514 kb on + strand, within MPMX20_01353 at 1416.680 kb on + strand, within MPMX20_01353 at 1416.680 kb on + strand, within MPMX20_01353 at 1416.707 kb on + strand, within MPMX20_01353 at 1416.724 kb on - strand, within MPMX20_01353 at 1416.724 kb on - strand, within MPMX20_01353 at 1416.762 kb on - strand, within MPMX20_01353 at 1416.836 kb on - strand, within MPMX20_01353 at 1416.914 kb on + strand, within MPMX20_01353 at 1416.919 kb on + strand at 1416.920 kb on + strand at 1416.970 kb on - strand at 1416.983 kb on + strand at 1416.990 kb on + strand at 1417.020 kb on + strand at 1417.020 kb on + strand at 1417.020 kb on + strand at 1417.022 kb on - strand at 1417.027 kb on - strand at 1417.028 kb on - strand at 1417.039 kb on + strand at 1417.040 kb on - strand at 1419.439 kb on + strand, within MPMX20_01354 at 1419.439 kb on + strand, within MPMX20_01354 at 1419.490 kb on + strand, within MPMX20_01354 at 1419.581 kb on + strand, within MPMX20_01354 at 1419.586 kb on + strand, within MPMX20_01354 at 1419.586 kb on + strand, within MPMX20_01354 at 1419.959 kb on + strand at 1419.992 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 1,416,386 + MPMX20_01353 0.16 +0.0 1,416,394 - MPMX20_01353 0.17 +0.2 1,416,446 - MPMX20_01353 0.24 +0.4 1,416,492 + MPMX20_01353 0.30 -2.3 1,416,514 + MPMX20_01353 0.33 -1.4 1,416,680 + MPMX20_01353 0.57 -0.5 1,416,680 + MPMX20_01353 0.57 -2.7 1,416,707 + MPMX20_01353 0.60 -2.1 1,416,724 - MPMX20_01353 0.63 +0.1 1,416,724 - MPMX20_01353 0.63 -3.6 1,416,762 - MPMX20_01353 0.68 +0.6 1,416,836 - MPMX20_01353 0.78 -2.5 1,416,914 + MPMX20_01353 0.89 -0.2 1,416,919 + -1.1 1,416,920 + -0.3 1,416,970 - -0.8 1,416,983 + -0.7 1,416,990 + +0.0 1,417,020 + -0.8 1,417,020 + +0.2 1,417,020 + -0.2 1,417,022 - -0.5 1,417,027 - -1.4 1,417,028 - -1.8 1,417,039 + -0.5 1,417,040 - -1.6 1,419,439 + MPMX20_01354 0.79 -2.2 1,419,439 + MPMX20_01354 0.79 -4.0 1,419,490 + MPMX20_01354 0.81 -0.6 1,419,581 + MPMX20_01354 0.84 -2.8 1,419,586 + MPMX20_01354 0.84 -1.7 1,419,586 + MPMX20_01354 0.84 -0.6 1,419,959 + -0.4 1,419,992 + -0.9
Or see this region's nucleotide sequence