Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01133 and MPMX20_01134 are separated by 121 nucleotides MPMX20_01134 and MPMX20_01135 overlap by 11 nucleotides MPMX20_01135 and MPMX20_01136 are separated by 190 nucleotides
MPMX20_01133: MPMX20_01133 - Oxygen-insensitive NAD(P)H nitroreductase, at 1,194,212 to 1,194,865
_01133
MPMX20_01134: MPMX20_01134 - hypothetical protein, at 1,194,987 to 1,195,355
_01134
MPMX20_01135: MPMX20_01135 - HTH-type transcriptional regulator BetI, at 1,195,345 to 1,195,935
_01135
MPMX20_01136: MPMX20_01136 - hypothetical protein, at 1,196,126 to 1,197,229
_01136
Position (kb)
1195
1196 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1194.419 kb on - strand, within MPMX20_01133 at 1194.536 kb on - strand, within MPMX20_01133 at 1194.545 kb on - strand, within MPMX20_01133 at 1194.584 kb on - strand, within MPMX20_01133 at 1194.587 kb on + strand, within MPMX20_01133 at 1194.614 kb on + strand, within MPMX20_01133 at 1194.625 kb on + strand, within MPMX20_01133 at 1194.625 kb on + strand, within MPMX20_01133 at 1194.633 kb on - strand, within MPMX20_01133 at 1194.633 kb on - strand, within MPMX20_01133 at 1194.700 kb on - strand, within MPMX20_01133 at 1194.700 kb on - strand, within MPMX20_01133 at 1194.733 kb on + strand, within MPMX20_01133 at 1194.740 kb on - strand, within MPMX20_01133 at 1194.740 kb on - strand, within MPMX20_01133 at 1194.771 kb on - strand, within MPMX20_01133 at 1194.810 kb on - strand at 1194.814 kb on + strand at 1194.831 kb on - strand at 1194.868 kb on - strand at 1194.978 kb on + strand at 1195.025 kb on + strand, within MPMX20_01134 at 1195.139 kb on + strand, within MPMX20_01134 at 1195.147 kb on - strand, within MPMX20_01134 at 1195.200 kb on + strand, within MPMX20_01134 at 1195.260 kb on - strand, within MPMX20_01134 at 1195.282 kb on + strand, within MPMX20_01134 at 1195.282 kb on + strand, within MPMX20_01134 at 1195.290 kb on - strand, within MPMX20_01134 at 1195.321 kb on + strand at 1195.396 kb on + strand at 1195.594 kb on - strand, within MPMX20_01135 at 1195.666 kb on + strand, within MPMX20_01135 at 1195.698 kb on + strand, within MPMX20_01135 at 1195.698 kb on + strand, within MPMX20_01135 at 1195.706 kb on - strand, within MPMX20_01135 at 1195.706 kb on - strand, within MPMX20_01135 at 1195.706 kb on - strand, within MPMX20_01135 at 1195.818 kb on - strand, within MPMX20_01135 at 1195.847 kb on + strand, within MPMX20_01135 at 1195.859 kb on + strand, within MPMX20_01135 at 1195.863 kb on - strand, within MPMX20_01135 at 1195.863 kb on - strand, within MPMX20_01135 at 1195.867 kb on - strand, within MPMX20_01135 at 1195.937 kb on + strand at 1196.041 kb on - strand at 1196.146 kb on - strand at 1196.161 kb on - strand at 1196.161 kb on - strand at 1196.190 kb on - strand at 1196.191 kb on - strand at 1196.202 kb on + strand at 1196.229 kb on + strand at 1196.237 kb on - strand, within MPMX20_01136 at 1196.253 kb on - strand, within MPMX20_01136 at 1196.297 kb on + strand, within MPMX20_01136 at 1196.306 kb on - strand, within MPMX20_01136 at 1196.431 kb on + strand, within MPMX20_01136 at 1196.439 kb on - strand, within MPMX20_01136 at 1196.440 kb on + strand, within MPMX20_01136 at 1196.440 kb on + strand, within MPMX20_01136 at 1196.448 kb on - strand, within MPMX20_01136 at 1196.448 kb on - strand, within MPMX20_01136 at 1196.448 kb on - strand, within MPMX20_01136 at 1196.448 kb on - strand, within MPMX20_01136 at 1196.448 kb on - strand, within MPMX20_01136 at 1196.499 kb on + strand, within MPMX20_01136 at 1196.499 kb on + strand, within MPMX20_01136 at 1196.507 kb on - strand, within MPMX20_01136 at 1196.517 kb on + strand, within MPMX20_01136 at 1196.525 kb on - strand, within MPMX20_01136 at 1196.563 kb on + strand, within MPMX20_01136 at 1196.571 kb on - strand, within MPMX20_01136 at 1196.573 kb on + strand, within MPMX20_01136 at 1196.581 kb on - strand, within MPMX20_01136 at 1196.581 kb on - strand, within MPMX20_01136 at 1196.591 kb on - strand, within MPMX20_01136 at 1196.618 kb on + strand, within MPMX20_01136 at 1196.632 kb on + strand, within MPMX20_01136 at 1196.718 kb on - strand, within MPMX20_01136 at 1196.756 kb on - strand, within MPMX20_01136 at 1196.775 kb on - strand, within MPMX20_01136 at 1196.778 kb on + strand, within MPMX20_01136 at 1196.778 kb on + strand, within MPMX20_01136 at 1196.778 kb on + strand, within MPMX20_01136 at 1196.780 kb on - strand, within MPMX20_01136 at 1196.786 kb on + strand, within MPMX20_01136 at 1196.786 kb on - strand, within MPMX20_01136 at 1196.791 kb on + strand, within MPMX20_01136 at 1196.799 kb on - strand, within MPMX20_01136 at 1196.843 kb on - strand, within MPMX20_01136 at 1196.853 kb on + strand, within MPMX20_01136 at 1196.917 kb on + strand, within MPMX20_01136
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 1,194,419 - MPMX20_01133 0.32 -0.0 1,194,536 - MPMX20_01133 0.50 -0.3 1,194,545 - MPMX20_01133 0.51 +0.2 1,194,584 - MPMX20_01133 0.57 -2.6 1,194,587 + MPMX20_01133 0.57 -0.2 1,194,614 + MPMX20_01133 0.61 -0.7 1,194,625 + MPMX20_01133 0.63 -0.2 1,194,625 + MPMX20_01133 0.63 +0.3 1,194,633 - MPMX20_01133 0.64 -3.0 1,194,633 - MPMX20_01133 0.64 +0.5 1,194,700 - MPMX20_01133 0.75 -0.2 1,194,700 - MPMX20_01133 0.75 -0.8 1,194,733 + MPMX20_01133 0.80 -1.1 1,194,740 - MPMX20_01133 0.81 -0.1 1,194,740 - MPMX20_01133 0.81 +0.2 1,194,771 - MPMX20_01133 0.85 -0.7 1,194,810 - -1.4 1,194,814 + +0.4 1,194,831 - -0.1 1,194,868 - +1.0 1,194,978 + -0.6 1,195,025 + MPMX20_01134 0.10 -0.6 1,195,139 + MPMX20_01134 0.41 +2.0 1,195,147 - MPMX20_01134 0.43 -0.8 1,195,200 + MPMX20_01134 0.58 +0.4 1,195,260 - MPMX20_01134 0.74 -2.4 1,195,282 + MPMX20_01134 0.80 +1.5 1,195,282 + MPMX20_01134 0.80 -1.8 1,195,290 - MPMX20_01134 0.82 -0.9 1,195,321 + -1.3 1,195,396 + -1.4 1,195,594 - MPMX20_01135 0.42 -0.5 1,195,666 + MPMX20_01135 0.54 -1.5 1,195,698 + MPMX20_01135 0.60 +0.6 1,195,698 + MPMX20_01135 0.60 -1.7 1,195,706 - MPMX20_01135 0.61 -1.7 1,195,706 - MPMX20_01135 0.61 +0.3 1,195,706 - MPMX20_01135 0.61 -1.0 1,195,818 - MPMX20_01135 0.80 -1.6 1,195,847 + MPMX20_01135 0.85 -1.0 1,195,859 + MPMX20_01135 0.87 -0.2 1,195,863 - MPMX20_01135 0.88 -2.0 1,195,863 - MPMX20_01135 0.88 -0.0 1,195,867 - MPMX20_01135 0.88 -0.9 1,195,937 + +0.3 1,196,041 - +0.1 1,196,146 - -0.3 1,196,161 - +0.7 1,196,161 - +0.1 1,196,190 - +0.5 1,196,191 - -0.1 1,196,202 + +2.0 1,196,229 + -0.4 1,196,237 - MPMX20_01136 0.10 -1.9 1,196,253 - MPMX20_01136 0.12 -0.5 1,196,297 + MPMX20_01136 0.15 -2.2 1,196,306 - MPMX20_01136 0.16 -1.2 1,196,431 + MPMX20_01136 0.28 -0.5 1,196,439 - MPMX20_01136 0.28 +1.0 1,196,440 + MPMX20_01136 0.28 -1.1 1,196,440 + MPMX20_01136 0.28 +0.3 1,196,448 - MPMX20_01136 0.29 +0.0 1,196,448 - MPMX20_01136 0.29 +0.6 1,196,448 - MPMX20_01136 0.29 +0.7 1,196,448 - MPMX20_01136 0.29 -0.6 1,196,448 - MPMX20_01136 0.29 -1.0 1,196,499 + MPMX20_01136 0.34 -0.2 1,196,499 + MPMX20_01136 0.34 +0.6 1,196,507 - MPMX20_01136 0.35 -1.1 1,196,517 + MPMX20_01136 0.35 +0.8 1,196,525 - MPMX20_01136 0.36 -0.4 1,196,563 + MPMX20_01136 0.40 -0.8 1,196,571 - MPMX20_01136 0.40 -1.0 1,196,573 + MPMX20_01136 0.40 -1.0 1,196,581 - MPMX20_01136 0.41 +0.5 1,196,581 - MPMX20_01136 0.41 -0.8 1,196,591 - MPMX20_01136 0.42 +1.4 1,196,618 + MPMX20_01136 0.45 -0.3 1,196,632 + MPMX20_01136 0.46 -0.8 1,196,718 - MPMX20_01136 0.54 +0.0 1,196,756 - MPMX20_01136 0.57 -0.4 1,196,775 - MPMX20_01136 0.59 +0.2 1,196,778 + MPMX20_01136 0.59 -0.3 1,196,778 + MPMX20_01136 0.59 -0.5 1,196,778 + MPMX20_01136 0.59 -1.0 1,196,780 - MPMX20_01136 0.59 +0.2 1,196,786 + MPMX20_01136 0.60 -0.7 1,196,786 - MPMX20_01136 0.60 +0.3 1,196,791 + MPMX20_01136 0.60 -1.2 1,196,799 - MPMX20_01136 0.61 +0.1 1,196,843 - MPMX20_01136 0.65 +0.7 1,196,853 + MPMX20_01136 0.66 -0.6 1,196,917 + MPMX20_01136 0.72 -0.3
Or see this region's nucleotide sequence