Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01029 and MPMX20_01030 are separated by 183 nucleotides MPMX20_01030 and MPMX20_01031 are separated by 210 nucleotides MPMX20_01031 and MPMX20_01032 are separated by 212 nucleotides
MPMX20_01029: MPMX20_01029 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,082,566 to 1,083,840
_01029
MPMX20_01030: MPMX20_01030 - Lon protease, at 1,084,024 to 1,086,378
_01030
MPMX20_01031: MPMX20_01031 - DNA-binding protein HU-beta, at 1,086,589 to 1,086,861
_01031
MPMX20_01032: MPMX20_01032 - Peptidyl-prolyl cis-trans isomerase D, at 1,087,074 to 1,088,945
_01032
Position (kb)
1084
1085
1086
1087 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1083.284 kb on - strand, within MPMX20_01029 at 1083.393 kb on - strand, within MPMX20_01029 at 1083.434 kb on - strand, within MPMX20_01029 at 1083.531 kb on + strand, within MPMX20_01029 at 1083.539 kb on - strand, within MPMX20_01029 at 1083.573 kb on + strand, within MPMX20_01029 at 1083.713 kb on - strand at 1083.783 kb on + strand at 1083.940 kb on - strand at 1084.028 kb on + strand at 1084.078 kb on + strand at 1084.091 kb on - strand at 1084.107 kb on - strand at 1084.107 kb on - strand at 1084.291 kb on - strand, within MPMX20_01030 at 1084.442 kb on - strand, within MPMX20_01030 at 1084.472 kb on - strand, within MPMX20_01030 at 1084.489 kb on + strand, within MPMX20_01030 at 1084.504 kb on - strand, within MPMX20_01030 at 1084.537 kb on - strand, within MPMX20_01030 at 1084.641 kb on + strand, within MPMX20_01030 at 1084.760 kb on - strand, within MPMX20_01030 at 1084.876 kb on - strand, within MPMX20_01030 at 1084.917 kb on + strand, within MPMX20_01030 at 1085.026 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.049 kb on - strand, within MPMX20_01030 at 1085.049 kb on - strand, within MPMX20_01030 at 1085.049 kb on - strand, within MPMX20_01030 at 1085.049 kb on - strand, within MPMX20_01030 at 1085.049 kb on - strand, within MPMX20_01030 at 1085.049 kb on - strand, within MPMX20_01030 at 1085.049 kb on - strand, within MPMX20_01030 at 1085.049 kb on - strand, within MPMX20_01030 at 1085.077 kb on - strand, within MPMX20_01030 at 1085.079 kb on + strand, within MPMX20_01030 at 1085.466 kb on + strand, within MPMX20_01030 at 1085.483 kb on + strand, within MPMX20_01030 at 1085.596 kb on - strand, within MPMX20_01030 at 1085.598 kb on - strand, within MPMX20_01030 at 1085.598 kb on - strand, within MPMX20_01030 at 1085.809 kb on + strand, within MPMX20_01030 at 1085.809 kb on + strand, within MPMX20_01030 at 1085.903 kb on - strand, within MPMX20_01030 at 1085.903 kb on - strand, within MPMX20_01030 at 1086.163 kb on - strand at 1086.213 kb on + strand at 1086.291 kb on + strand at 1086.291 kb on + strand at 1086.393 kb on - strand at 1086.393 kb on - strand at 1086.405 kb on + strand at 1086.405 kb on + strand at 1086.464 kb on + strand at 1086.464 kb on - strand at 1086.469 kb on + strand at 1086.469 kb on + strand at 1086.487 kb on - strand at 1086.495 kb on + strand at 1086.502 kb on + strand at 1086.502 kb on + strand at 1086.502 kb on + strand at 1086.502 kb on + strand at 1086.515 kb on - strand at 1086.576 kb on + strand at 1086.599 kb on - strand at 1086.718 kb on - strand, within MPMX20_01031 at 1086.726 kb on - strand, within MPMX20_01031 at 1086.742 kb on + strand, within MPMX20_01031 at 1086.891 kb on + strand at 1086.891 kb on + strand at 1086.891 kb on + strand at 1086.899 kb on - strand at 1086.899 kb on - strand at 1086.933 kb on + strand at 1086.936 kb on - strand at 1086.936 kb on - strand at 1086.936 kb on - strand at 1086.941 kb on - strand at 1086.941 kb on - strand at 1086.941 kb on - strand at 1087.001 kb on - strand at 1087.046 kb on - strand at 1087.046 kb on - strand at 1087.084 kb on + strand at 1087.084 kb on - strand at 1087.095 kb on + strand at 1087.095 kb on + strand at 1087.105 kb on + strand at 1087.165 kb on + strand at 1087.233 kb on - strand at 1087.259 kb on + strand at 1087.267 kb on - strand, within MPMX20_01032 at 1087.281 kb on - strand, within MPMX20_01032
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 1,083,284 - MPMX20_01029 0.56 -1.8 1,083,393 - MPMX20_01029 0.65 -1.2 1,083,434 - MPMX20_01029 0.68 -1.2 1,083,531 + MPMX20_01029 0.76 -0.0 1,083,539 - MPMX20_01029 0.76 -0.3 1,083,573 + MPMX20_01029 0.79 -0.3 1,083,713 - -2.8 1,083,783 + -0.6 1,083,940 - -1.2 1,084,028 + -1.5 1,084,078 + -3.3 1,084,091 - -0.9 1,084,107 - -0.7 1,084,107 - -2.2 1,084,291 - MPMX20_01030 0.11 -0.2 1,084,442 - MPMX20_01030 0.18 +0.4 1,084,472 - MPMX20_01030 0.19 -1.0 1,084,489 + MPMX20_01030 0.20 -2.2 1,084,504 - MPMX20_01030 0.20 +1.0 1,084,537 - MPMX20_01030 0.22 -2.0 1,084,641 + MPMX20_01030 0.26 -2.2 1,084,760 - MPMX20_01030 0.31 -1.0 1,084,876 - MPMX20_01030 0.36 +0.2 1,084,917 + MPMX20_01030 0.38 -2.2 1,085,026 + MPMX20_01030 0.43 -2.0 1,085,041 + MPMX20_01030 0.43 -1.1 1,085,041 + MPMX20_01030 0.43 -1.9 1,085,041 + MPMX20_01030 0.43 +1.0 1,085,041 + MPMX20_01030 0.43 -2.0 1,085,041 + MPMX20_01030 0.43 -0.0 1,085,041 + MPMX20_01030 0.43 -1.0 1,085,041 + MPMX20_01030 0.43 -1.7 1,085,041 + MPMX20_01030 0.43 -1.8 1,085,041 + MPMX20_01030 0.43 -0.6 1,085,041 + MPMX20_01030 0.43 +0.4 1,085,041 + MPMX20_01030 0.43 -0.1 1,085,041 + MPMX20_01030 0.43 -2.4 1,085,041 + MPMX20_01030 0.43 -1.3 1,085,049 - MPMX20_01030 0.44 -0.0 1,085,049 - MPMX20_01030 0.44 -0.6 1,085,049 - MPMX20_01030 0.44 -1.5 1,085,049 - MPMX20_01030 0.44 -1.2 1,085,049 - MPMX20_01030 0.44 -1.7 1,085,049 - MPMX20_01030 0.44 +0.4 1,085,049 - MPMX20_01030 0.44 -2.8 1,085,049 - MPMX20_01030 0.44 -3.5 1,085,077 - MPMX20_01030 0.45 -0.8 1,085,079 + MPMX20_01030 0.45 -2.3 1,085,466 + MPMX20_01030 0.61 +1.1 1,085,483 + MPMX20_01030 0.62 +1.0 1,085,596 - MPMX20_01030 0.67 -0.8 1,085,598 - MPMX20_01030 0.67 -1.8 1,085,598 - MPMX20_01030 0.67 -0.6 1,085,809 + MPMX20_01030 0.76 -1.8 1,085,809 + MPMX20_01030 0.76 -2.5 1,085,903 - MPMX20_01030 0.80 -0.6 1,085,903 - MPMX20_01030 0.80 -2.1 1,086,163 - -0.8 1,086,213 + -0.6 1,086,291 + +1.0 1,086,291 + -1.6 1,086,393 - +0.3 1,086,393 - -0.9 1,086,405 + -0.1 1,086,405 + +2.0 1,086,464 + -0.5 1,086,464 - +0.2 1,086,469 + -0.0 1,086,469 + +1.0 1,086,487 - +0.6 1,086,495 + +0.2 1,086,502 + +1.3 1,086,502 + -1.0 1,086,502 + -0.2 1,086,502 + +0.5 1,086,515 - +0.1 1,086,576 + +1.0 1,086,599 - -0.2 1,086,718 - MPMX20_01031 0.47 +0.6 1,086,726 - MPMX20_01031 0.50 +0.4 1,086,742 + MPMX20_01031 0.56 -0.4 1,086,891 + -0.2 1,086,891 + +0.6 1,086,891 + -0.4 1,086,899 - +1.1 1,086,899 - +0.7 1,086,933 + -1.5 1,086,936 - -1.1 1,086,936 - +0.3 1,086,936 - -1.0 1,086,941 - +0.6 1,086,941 - +0.0 1,086,941 - +0.3 1,087,001 - +0.5 1,087,046 - -0.6 1,087,046 - -0.4 1,087,084 + +3.6 1,087,084 - -0.7 1,087,095 + -0.9 1,087,095 + +0.2 1,087,105 + -1.8 1,087,165 + -4.1 1,087,233 - +0.8 1,087,259 + -1.0 1,087,267 - MPMX20_01032 0.10 -0.1 1,087,281 - MPMX20_01032 0.11 +0.0
Or see this region's nucleotide sequence