Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01027 and MPMX20_01028 are separated by 260 nucleotides MPMX20_01028 and MPMX20_01029 are separated by 126 nucleotides
MPMX20_01027: MPMX20_01027 - Trigger factor, at 1,080,257 to 1,081,555
_01027
MPMX20_01028: MPMX20_01028 - ATP-dependent Clp protease proteolytic subunit, at 1,081,816 to 1,082,439
_01028
MPMX20_01029: MPMX20_01029 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,082,566 to 1,083,840
_01029
Position (kb)
1081
1082
1083 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1080.824 kb on + strand, within MPMX20_01027 at 1080.824 kb on + strand, within MPMX20_01027 at 1080.945 kb on - strand, within MPMX20_01027 at 1080.972 kb on + strand, within MPMX20_01027 at 1081.064 kb on - strand, within MPMX20_01027 at 1081.083 kb on - strand, within MPMX20_01027 at 1081.090 kb on + strand, within MPMX20_01027 at 1081.100 kb on + strand, within MPMX20_01027 at 1081.108 kb on - strand, within MPMX20_01027 at 1081.398 kb on + strand, within MPMX20_01027 at 1081.463 kb on - strand at 1081.487 kb on + strand at 1081.634 kb on - strand at 1081.634 kb on - strand at 1081.634 kb on - strand at 1081.634 kb on - strand at 1081.634 kb on - strand at 1081.709 kb on - strand at 1081.713 kb on + strand at 1081.713 kb on + strand at 1081.721 kb on - strand at 1081.721 kb on - strand at 1081.721 kb on - strand at 1081.721 kb on - strand at 1081.721 kb on - strand at 1081.767 kb on + strand at 1081.775 kb on - strand at 1081.826 kb on - strand at 1081.834 kb on + strand at 1081.866 kb on - strand at 1081.884 kb on + strand, within MPMX20_01028 at 1081.892 kb on - strand, within MPMX20_01028 at 1081.976 kb on - strand, within MPMX20_01028 at 1082.108 kb on + strand, within MPMX20_01028 at 1082.175 kb on + strand, within MPMX20_01028 at 1082.175 kb on + strand, within MPMX20_01028 at 1082.175 kb on + strand, within MPMX20_01028 at 1082.175 kb on + strand, within MPMX20_01028 at 1082.237 kb on - strand, within MPMX20_01028 at 1082.344 kb on - strand, within MPMX20_01028 at 1082.530 kb on - strand at 1082.535 kb on + strand at 1082.573 kb on - strand at 1082.607 kb on - strand at 1082.665 kb on + strand at 1082.665 kb on + strand at 1082.665 kb on + strand at 1082.726 kb on - strand, within MPMX20_01029 at 1082.839 kb on + strand, within MPMX20_01029 at 1082.847 kb on - strand, within MPMX20_01029 at 1082.847 kb on - strand, within MPMX20_01029 at 1082.885 kb on + strand, within MPMX20_01029 at 1082.885 kb on + strand, within MPMX20_01029 at 1082.885 kb on + strand, within MPMX20_01029 at 1082.885 kb on + strand, within MPMX20_01029 at 1082.885 kb on + strand, within MPMX20_01029 at 1082.885 kb on + strand, within MPMX20_01029 at 1082.893 kb on - strand, within MPMX20_01029 at 1082.999 kb on + strand, within MPMX20_01029 at 1083.017 kb on - strand, within MPMX20_01029 at 1083.284 kb on - strand, within MPMX20_01029 at 1083.393 kb on - strand, within MPMX20_01029 at 1083.434 kb on - strand, within MPMX20_01029
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 1,080,824 + MPMX20_01027 0.44 +0.4 1,080,824 + MPMX20_01027 0.44 +0.6 1,080,945 - MPMX20_01027 0.53 +0.9 1,080,972 + MPMX20_01027 0.55 -0.2 1,081,064 - MPMX20_01027 0.62 +0.7 1,081,083 - MPMX20_01027 0.64 +0.2 1,081,090 + MPMX20_01027 0.64 -0.1 1,081,100 + MPMX20_01027 0.65 -0.2 1,081,108 - MPMX20_01027 0.66 -1.5 1,081,398 + MPMX20_01027 0.88 +0.5 1,081,463 - +3.3 1,081,487 + -2.6 1,081,634 - -0.8 1,081,634 - -2.2 1,081,634 - +0.8 1,081,634 - +0.1 1,081,634 - -2.1 1,081,709 - +0.4 1,081,713 + +0.4 1,081,713 + +0.2 1,081,721 - +1.6 1,081,721 - -0.6 1,081,721 - -0.3 1,081,721 - +1.3 1,081,721 - -0.6 1,081,767 + -1.4 1,081,775 - -0.9 1,081,826 - -0.6 1,081,834 + +0.4 1,081,866 - +2.0 1,081,884 + MPMX20_01028 0.11 -0.6 1,081,892 - MPMX20_01028 0.12 -0.5 1,081,976 - MPMX20_01028 0.26 +1.0 1,082,108 + MPMX20_01028 0.47 -0.3 1,082,175 + MPMX20_01028 0.58 -1.3 1,082,175 + MPMX20_01028 0.58 +2.0 1,082,175 + MPMX20_01028 0.58 +1.6 1,082,175 + MPMX20_01028 0.58 +0.4 1,082,237 - MPMX20_01028 0.67 -0.3 1,082,344 - MPMX20_01028 0.85 -0.6 1,082,530 - +0.7 1,082,535 + +1.5 1,082,573 - +2.3 1,082,607 - -2.0 1,082,665 + -0.8 1,082,665 + -0.5 1,082,665 + -0.0 1,082,726 - MPMX20_01029 0.13 +1.1 1,082,839 + MPMX20_01029 0.21 -0.8 1,082,847 - MPMX20_01029 0.22 +0.7 1,082,847 - MPMX20_01029 0.22 -1.5 1,082,885 + MPMX20_01029 0.25 -1.6 1,082,885 + MPMX20_01029 0.25 -1.0 1,082,885 + MPMX20_01029 0.25 -1.2 1,082,885 + MPMX20_01029 0.25 -1.6 1,082,885 + MPMX20_01029 0.25 +1.2 1,082,885 + MPMX20_01029 0.25 +0.4 1,082,893 - MPMX20_01029 0.26 +0.6 1,082,999 + MPMX20_01029 0.34 -1.5 1,083,017 - MPMX20_01029 0.35 +1.3 1,083,284 - MPMX20_01029 0.56 -1.8 1,083,393 - MPMX20_01029 0.65 -1.2 1,083,434 - MPMX20_01029 0.68 -1.2
Or see this region's nucleotide sequence