Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01016 and MPMX20_01017 are separated by 203 nucleotides MPMX20_01017 and MPMX20_01018 are separated by 32 nucleotides MPMX20_01018 and MPMX20_01019 are separated by 149 nucleotides
MPMX20_01016: MPMX20_01016 - 2-dehydropantoate 2-reductase, at 1,068,790 to 1,069,701
_01016
MPMX20_01017: MPMX20_01017 - hypothetical protein, at 1,069,905 to 1,070,396
_01017
MPMX20_01018: MPMX20_01018 - Inner membrane transport protein YajR, at 1,070,429 to 1,071,790
_01018
MPMX20_01019: MPMX20_01019 - Protoheme IX farnesyltransferase, at 1,071,940 to 1,072,827
_01019
Position (kb)
1070
1071
1072 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1069.472 kb on + strand, within MPMX20_01016 at 1069.484 kb on + strand, within MPMX20_01016 at 1069.560 kb on - strand, within MPMX20_01016 at 1069.589 kb on - strand, within MPMX20_01016 at 1069.597 kb on + strand, within MPMX20_01016 at 1069.605 kb on - strand, within MPMX20_01016 at 1069.605 kb on - strand, within MPMX20_01016 at 1069.618 kb on + strand at 1069.618 kb on + strand at 1069.618 kb on + strand at 1069.618 kb on + strand at 1069.618 kb on + strand at 1069.626 kb on + strand at 1069.626 kb on - strand at 1069.626 kb on - strand at 1069.626 kb on - strand at 1069.655 kb on + strand at 1069.663 kb on - strand at 1069.663 kb on - strand at 1069.673 kb on - strand at 1069.673 kb on - strand at 1069.679 kb on + strand at 1069.687 kb on - strand at 1069.744 kb on + strand at 1069.797 kb on + strand at 1069.801 kb on + strand at 1069.816 kb on + strand at 1069.854 kb on + strand at 1069.866 kb on + strand at 1069.874 kb on - strand at 1070.017 kb on + strand, within MPMX20_01017 at 1070.087 kb on + strand, within MPMX20_01017 at 1070.111 kb on + strand, within MPMX20_01017 at 1070.130 kb on - strand, within MPMX20_01017 at 1070.155 kb on + strand, within MPMX20_01017 at 1070.213 kb on - strand, within MPMX20_01017 at 1070.213 kb on - strand, within MPMX20_01017 at 1070.213 kb on - strand, within MPMX20_01017 at 1070.213 kb on - strand, within MPMX20_01017 at 1070.258 kb on + strand, within MPMX20_01017 at 1070.503 kb on + strand at 1070.511 kb on - strand at 1070.801 kb on - strand, within MPMX20_01018 at 1070.847 kb on + strand, within MPMX20_01018 at 1070.847 kb on - strand, within MPMX20_01018 at 1071.065 kb on - strand, within MPMX20_01018 at 1071.182 kb on + strand, within MPMX20_01018 at 1071.182 kb on + strand, within MPMX20_01018 at 1071.190 kb on - strand, within MPMX20_01018 at 1071.190 kb on - strand, within MPMX20_01018 at 1071.250 kb on + strand, within MPMX20_01018 at 1071.250 kb on + strand, within MPMX20_01018 at 1071.250 kb on + strand, within MPMX20_01018 at 1071.258 kb on - strand, within MPMX20_01018 at 1071.258 kb on - strand, within MPMX20_01018 at 1071.258 kb on - strand, within MPMX20_01018 at 1071.290 kb on - strand, within MPMX20_01018 at 1071.315 kb on - strand, within MPMX20_01018 at 1071.315 kb on - strand, within MPMX20_01018 at 1071.415 kb on - strand, within MPMX20_01018 at 1071.456 kb on - strand, within MPMX20_01018 at 1071.456 kb on - strand, within MPMX20_01018 at 1071.456 kb on - strand, within MPMX20_01018 at 1071.492 kb on + strand, within MPMX20_01018 at 1071.492 kb on + strand, within MPMX20_01018 at 1071.492 kb on + strand, within MPMX20_01018 at 1071.500 kb on - strand, within MPMX20_01018 at 1071.556 kb on + strand, within MPMX20_01018 at 1071.583 kb on + strand, within MPMX20_01018 at 1071.583 kb on + strand, within MPMX20_01018 at 1071.662 kb on + strand at 1071.670 kb on - strand at 1071.683 kb on + strand at 1071.683 kb on + strand at 1071.693 kb on + strand at 1071.751 kb on - strand at 1071.814 kb on + strand at 1071.819 kb on + strand at 1071.827 kb on - strand at 1071.827 kb on - strand at 1071.831 kb on + strand at 1071.932 kb on + strand at 1071.932 kb on + strand at 1071.968 kb on - strand at 1071.968 kb on - strand at 1072.086 kb on + strand, within MPMX20_01019 at 1072.086 kb on + strand, within MPMX20_01019 at 1072.094 kb on - strand, within MPMX20_01019 at 1072.109 kb on - strand, within MPMX20_01019 at 1072.109 kb on - strand, within MPMX20_01019 at 1072.247 kb on + strand, within MPMX20_01019 at 1072.303 kb on - strand, within MPMX20_01019 at 1072.328 kb on - strand, within MPMX20_01019 at 1072.352 kb on - strand, within MPMX20_01019 at 1072.504 kb on + strand, within MPMX20_01019 at 1072.523 kb on + strand, within MPMX20_01019 at 1072.603 kb on - strand, within MPMX20_01019 at 1072.694 kb on + strand, within MPMX20_01019 at 1072.697 kb on - strand, within MPMX20_01019 at 1072.697 kb on - strand, within MPMX20_01019 at 1072.709 kb on + strand, within MPMX20_01019 at 1072.735 kb on + strand, within MPMX20_01019
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 1,069,472 + MPMX20_01016 0.75 -0.0 1,069,484 + MPMX20_01016 0.76 +0.7 1,069,560 - MPMX20_01016 0.84 -1.3 1,069,589 - MPMX20_01016 0.88 +0.2 1,069,597 + MPMX20_01016 0.88 +1.6 1,069,605 - MPMX20_01016 0.89 +0.3 1,069,605 - MPMX20_01016 0.89 -0.8 1,069,618 + -0.7 1,069,618 + +0.2 1,069,618 + -0.9 1,069,618 + -0.4 1,069,618 + -0.1 1,069,626 + -1.5 1,069,626 - -0.2 1,069,626 - -0.8 1,069,626 - -3.1 1,069,655 + -0.8 1,069,663 - +0.3 1,069,663 - -1.8 1,069,673 - +0.7 1,069,673 - +0.1 1,069,679 + +0.5 1,069,687 - +2.0 1,069,744 + +0.1 1,069,797 + +1.0 1,069,801 + +0.4 1,069,816 + -1.6 1,069,854 + +0.2 1,069,866 + +1.6 1,069,874 - -2.1 1,070,017 + MPMX20_01017 0.23 +1.3 1,070,087 + MPMX20_01017 0.37 -1.1 1,070,111 + MPMX20_01017 0.42 -0.6 1,070,130 - MPMX20_01017 0.46 +0.4 1,070,155 + MPMX20_01017 0.51 +0.9 1,070,213 - MPMX20_01017 0.63 +0.1 1,070,213 - MPMX20_01017 0.63 +0.1 1,070,213 - MPMX20_01017 0.63 +0.9 1,070,213 - MPMX20_01017 0.63 -0.5 1,070,258 + MPMX20_01017 0.72 -3.0 1,070,503 + -0.5 1,070,511 - -0.4 1,070,801 - MPMX20_01018 0.27 +0.4 1,070,847 + MPMX20_01018 0.31 -1.0 1,070,847 - MPMX20_01018 0.31 -1.1 1,071,065 - MPMX20_01018 0.47 +0.7 1,071,182 + MPMX20_01018 0.55 +0.4 1,071,182 + MPMX20_01018 0.55 -1.8 1,071,190 - MPMX20_01018 0.56 -0.3 1,071,190 - MPMX20_01018 0.56 -1.6 1,071,250 + MPMX20_01018 0.60 -1.3 1,071,250 + MPMX20_01018 0.60 -2.7 1,071,250 + MPMX20_01018 0.60 -0.4 1,071,258 - MPMX20_01018 0.61 -1.1 1,071,258 - MPMX20_01018 0.61 -3.2 1,071,258 - MPMX20_01018 0.61 +1.1 1,071,290 - MPMX20_01018 0.63 -2.2 1,071,315 - MPMX20_01018 0.65 -2.5 1,071,315 - MPMX20_01018 0.65 -2.3 1,071,415 - MPMX20_01018 0.72 -0.3 1,071,456 - MPMX20_01018 0.75 -0.1 1,071,456 - MPMX20_01018 0.75 -1.8 1,071,456 - MPMX20_01018 0.75 -1.9 1,071,492 + MPMX20_01018 0.78 -0.4 1,071,492 + MPMX20_01018 0.78 -0.9 1,071,492 + MPMX20_01018 0.78 -0.6 1,071,500 - MPMX20_01018 0.79 -1.6 1,071,556 + MPMX20_01018 0.83 -1.1 1,071,583 + MPMX20_01018 0.85 -1.3 1,071,583 + MPMX20_01018 0.85 -0.6 1,071,662 + +0.6 1,071,670 - -1.0 1,071,683 + +1.4 1,071,683 + +0.8 1,071,693 + -0.2 1,071,751 - +0.2 1,071,814 + +1.2 1,071,819 + +2.0 1,071,827 - -0.9 1,071,827 - -0.0 1,071,831 + -0.0 1,071,932 + +0.3 1,071,932 + -0.3 1,071,968 - -0.3 1,071,968 - -0.3 1,072,086 + MPMX20_01019 0.16 +1.0 1,072,086 + MPMX20_01019 0.16 -1.1 1,072,094 - MPMX20_01019 0.17 -0.2 1,072,109 - MPMX20_01019 0.19 -1.0 1,072,109 - MPMX20_01019 0.19 -0.8 1,072,247 + MPMX20_01019 0.35 -0.6 1,072,303 - MPMX20_01019 0.41 -0.7 1,072,328 - MPMX20_01019 0.44 -1.0 1,072,352 - MPMX20_01019 0.46 -0.7 1,072,504 + MPMX20_01019 0.64 -0.7 1,072,523 + MPMX20_01019 0.66 -0.7 1,072,603 - MPMX20_01019 0.75 -0.2 1,072,694 + MPMX20_01019 0.85 -2.4 1,072,697 - MPMX20_01019 0.85 +0.8 1,072,697 - MPMX20_01019 0.85 -0.1 1,072,709 + MPMX20_01019 0.87 +0.0 1,072,735 + MPMX20_01019 0.90 -0.6
Or see this region's nucleotide sequence