Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00812

Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00811 and MPMX20_00812 are separated by 412 nucleotidesMPMX20_00812 and MPMX20_00813 are separated by 188 nucleotidesMPMX20_00813 and MPMX20_00814 are separated by 31 nucleotides MPMX20_00811: MPMX20_00811 - hypothetical protein, at 851,401 to 852,930 _00811 MPMX20_00812: MPMX20_00812 - Aconitate hydratase B, at 853,343 to 855,940 _00812 MPMX20_00813: MPMX20_00813 - hypothetical protein, at 856,129 to 856,491 _00813 MPMX20_00814: MPMX20_00814 - S-adenosylmethionine decarboxylase proenzyme, at 856,523 to 857,317 _00814 Position (kb) 853 854 855 856Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 852.461 kb on + strand, within MPMX20_00811at 852.461 kb on + strand, within MPMX20_00811at 852.469 kb on - strand, within MPMX20_00811at 852.567 kb on + strand, within MPMX20_00811at 852.589 kb on + strand, within MPMX20_00811at 852.598 kb on - strand, within MPMX20_00811at 852.623 kb on - strand, within MPMX20_00811at 852.709 kb on - strand, within MPMX20_00811at 852.723 kb on - strand, within MPMX20_00811at 852.879 kb on + strandat 852.879 kb on + strandat 852.879 kb on + strandat 852.879 kb on + strandat 852.887 kb on - strandat 852.955 kb on - strandat 852.959 kb on + strandat 852.959 kb on + strandat 852.967 kb on + strandat 852.975 kb on - strandat 853.016 kb on - strandat 853.112 kb on + strandat 853.112 kb on - strandat 853.212 kb on + strandat 853.212 kb on + strandat 853.212 kb on + strandat 853.212 kb on + strandat 853.212 kb on + strandat 853.220 kb on - strandat 853.220 kb on - strandat 853.220 kb on - strandat 853.220 kb on - strandat 853.233 kb on + strandat 853.261 kb on + strandat 853.290 kb on - strandat 853.499 kb on + strandat 853.502 kb on - strandat 853.502 kb on - strandat 853.572 kb on + strandat 853.575 kb on + strandat 853.609 kb on + strand, within MPMX20_00812at 853.609 kb on + strand, within MPMX20_00812at 853.609 kb on + strand, within MPMX20_00812at 853.614 kb on + strand, within MPMX20_00812at 853.622 kb on - strand, within MPMX20_00812at 853.701 kb on + strand, within MPMX20_00812at 853.709 kb on + strand, within MPMX20_00812at 853.709 kb on - strand, within MPMX20_00812at 853.726 kb on + strand, within MPMX20_00812at 853.734 kb on - strand, within MPMX20_00812at 853.734 kb on - strand, within MPMX20_00812at 853.794 kb on - strand, within MPMX20_00812at 853.794 kb on - strand, within MPMX20_00812at 853.818 kb on + strand, within MPMX20_00812at 853.826 kb on - strand, within MPMX20_00812at 853.826 kb on - strand, within MPMX20_00812at 853.826 kb on - strand, within MPMX20_00812at 853.826 kb on - strand, within MPMX20_00812at 853.989 kb on + strand, within MPMX20_00812at 853.989 kb on + strand, within MPMX20_00812at 853.997 kb on - strand, within MPMX20_00812at 853.997 kb on - strand, within MPMX20_00812at 853.997 kb on - strand, within MPMX20_00812at 854.105 kb on - strand, within MPMX20_00812at 854.154 kb on + strand, within MPMX20_00812at 854.162 kb on - strand, within MPMX20_00812at 854.283 kb on - strand, within MPMX20_00812at 854.399 kb on - strand, within MPMX20_00812at 854.454 kb on - strand, within MPMX20_00812at 854.533 kb on + strand, within MPMX20_00812at 854.589 kb on + strand, within MPMX20_00812at 854.615 kb on - strand, within MPMX20_00812at 854.638 kb on - strand, within MPMX20_00812at 854.651 kb on - strand, within MPMX20_00812at 854.710 kb on + strand, within MPMX20_00812at 854.721 kb on - strand, within MPMX20_00812at 854.766 kb on - strand, within MPMX20_00812at 854.814 kb on - strand, within MPMX20_00812at 854.970 kb on + strand, within MPMX20_00812at 854.970 kb on + strand, within MPMX20_00812at 854.978 kb on - strand, within MPMX20_00812at 854.980 kb on + strand, within MPMX20_00812at 855.180 kb on - strand, within MPMX20_00812at 855.283 kb on - strand, within MPMX20_00812at 855.321 kb on - strand, within MPMX20_00812at 855.383 kb on + strand, within MPMX20_00812at 855.596 kb on + strand, within MPMX20_00812at 855.621 kb on + strand, within MPMX20_00812at 855.655 kb on + strand, within MPMX20_00812at 855.655 kb on + strand, within MPMX20_00812at 855.655 kb on + strand, within MPMX20_00812at 855.718 kb on - strandat 855.741 kb on + strandat 855.817 kb on + strandat 855.817 kb on + strandat 855.953 kb on + strandat 855.987 kb on + strandat 855.987 kb on + strandat 855.987 kb on + strandat 855.995 kb on - strandat 855.995 kb on - strandat 856.005 kb on - strandat 856.009 kb on + strandat 856.011 kb on - strandat 856.011 kb on - strandat 856.026 kb on + strandat 856.026 kb on + strandat 856.026 kb on + strandat 856.034 kb on - strandat 856.034 kb on - strandat 856.034 kb on - strandat 856.057 kb on + strandat 856.127 kb on - strandat 856.198 kb on + strand, within MPMX20_00813at 856.342 kb on - strand, within MPMX20_00813at 856.401 kb on - strand, within MPMX20_00813at 856.401 kb on - strand, within MPMX20_00813at 856.401 kb on - strand, within MPMX20_00813at 856.406 kb on + strand, within MPMX20_00813at 856.465 kb on + strandat 856.494 kb on + strandat 856.564 kb on + strandat 856.572 kb on - strandat 856.577 kb on - strandat 856.579 kb on + strandat 856.592 kb on - strandat 856.615 kb on - strand, within MPMX20_00814at 856.633 kb on - strand, within MPMX20_00814at 856.748 kb on + strand, within MPMX20_00814at 856.758 kb on + strand, within MPMX20_00814at 856.791 kb on + strand, within MPMX20_00814at 856.804 kb on + strand, within MPMX20_00814at 856.866 kb on - strand, within MPMX20_00814at 856.909 kb on - strand, within MPMX20_00814

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Per-strain Table

Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
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852,461 + MPMX20_00811 0.69 +1.9
852,461 + MPMX20_00811 0.69 -0.8
852,469 - MPMX20_00811 0.70 +0.2
852,567 + MPMX20_00811 0.76 +0.3
852,589 + MPMX20_00811 0.78 -0.5
852,598 - MPMX20_00811 0.78 -0.9
852,623 - MPMX20_00811 0.80 -0.8
852,709 - MPMX20_00811 0.85 -0.8
852,723 - MPMX20_00811 0.86 +0.4
852,879 + -0.0
852,879 + +0.0
852,879 + -0.4
852,879 + +0.4
852,887 - -0.2
852,955 - -2.5
852,959 + -0.8
852,959 + +3.0
852,967 + +0.2
852,975 - +0.9
853,016 - -0.9
853,112 + +1.5
853,112 - +0.9
853,212 + -0.3
853,212 + -0.1
853,212 + -0.7
853,212 + +0.5
853,212 + -0.5
853,220 - -2.8
853,220 - -0.3
853,220 - -0.1
853,220 - -1.6
853,233 + +1.0
853,261 + -0.6
853,290 - -0.6
853,499 + +0.4
853,502 - +1.4
853,502 - -0.0
853,572 + -0.4
853,575 + -0.0
853,609 + MPMX20_00812 0.10 -0.6
853,609 + MPMX20_00812 0.10 -2.0
853,609 + MPMX20_00812 0.10 -1.7
853,614 + MPMX20_00812 0.10 -1.2
853,622 - MPMX20_00812 0.11 -2.0
853,701 + MPMX20_00812 0.14 -1.0
853,709 + MPMX20_00812 0.14 +1.5
853,709 - MPMX20_00812 0.14 -1.5
853,726 + MPMX20_00812 0.15 -1.2
853,734 - MPMX20_00812 0.15 -0.8
853,734 - MPMX20_00812 0.15 -0.6
853,794 - MPMX20_00812 0.17 -1.6
853,794 - MPMX20_00812 0.17 +1.3
853,818 + MPMX20_00812 0.18 -1.9
853,826 - MPMX20_00812 0.19 -2.1
853,826 - MPMX20_00812 0.19 -2.0
853,826 - MPMX20_00812 0.19 -1.0
853,826 - MPMX20_00812 0.19 -0.6
853,989 + MPMX20_00812 0.25 -0.8
853,989 + MPMX20_00812 0.25 -0.7
853,997 - MPMX20_00812 0.25 +2.1
853,997 - MPMX20_00812 0.25 -2.0
853,997 - MPMX20_00812 0.25 -2.1
854,105 - MPMX20_00812 0.29 +0.7
854,154 + MPMX20_00812 0.31 -2.3
854,162 - MPMX20_00812 0.32 +0.5
854,283 - MPMX20_00812 0.36 +2.4
854,399 - MPMX20_00812 0.41 -0.8
854,454 - MPMX20_00812 0.43 +0.3
854,533 + MPMX20_00812 0.46 -1.4
854,589 + MPMX20_00812 0.48 -2.8
854,615 - MPMX20_00812 0.49 +0.2
854,638 - MPMX20_00812 0.50 -1.7
854,651 - MPMX20_00812 0.50 -0.6
854,710 + MPMX20_00812 0.53 -1.2
854,721 - MPMX20_00812 0.53 +1.0
854,766 - MPMX20_00812 0.55 -2.4
854,814 - MPMX20_00812 0.57 -0.8
854,970 + MPMX20_00812 0.63 -0.2
854,970 + MPMX20_00812 0.63 -1.4
854,978 - MPMX20_00812 0.63 -1.2
854,980 + MPMX20_00812 0.63 -2.7
855,180 - MPMX20_00812 0.71 -1.2
855,283 - MPMX20_00812 0.75 +1.0
855,321 - MPMX20_00812 0.76 -0.6
855,383 + MPMX20_00812 0.79 +0.4
855,596 + MPMX20_00812 0.87 -2.0
855,621 + MPMX20_00812 0.88 -0.4
855,655 + MPMX20_00812 0.89 -3.0
855,655 + MPMX20_00812 0.89 -0.0
855,655 + MPMX20_00812 0.89 -0.6
855,718 - -1.0
855,741 + +2.0
855,817 + -0.1
855,817 + -0.1
855,953 + +1.0
855,987 + -0.8
855,987 + -0.3
855,987 + -1.0
855,995 - -0.1
855,995 - +0.2
856,005 - +1.6
856,009 + +0.2
856,011 - -0.3
856,011 - -0.4
856,026 + +0.6
856,026 + +0.0
856,026 + +0.7
856,034 - +0.3
856,034 - +1.1
856,034 - +0.6
856,057 + +2.0
856,127 - -0.7
856,198 + MPMX20_00813 0.19 -0.4
856,342 - MPMX20_00813 0.59 -0.6
856,401 - MPMX20_00813 0.75 -2.4
856,401 - MPMX20_00813 0.75 -0.1
856,401 - MPMX20_00813 0.75 +0.7
856,406 + MPMX20_00813 0.76 -1.2
856,465 + -0.6
856,494 + -1.8
856,564 + -2.2
856,572 - -0.3
856,577 - +0.2
856,579 + +1.0
856,592 - -0.4
856,615 - MPMX20_00814 0.12 +2.3
856,633 - MPMX20_00814 0.14 -1.2
856,748 + MPMX20_00814 0.28 +1.4
856,758 + MPMX20_00814 0.30 +0.8
856,791 + MPMX20_00814 0.34 +0.1
856,804 + MPMX20_00814 0.35 -1.2
856,866 - MPMX20_00814 0.43 -0.2
856,909 - MPMX20_00814 0.49 -0.8

Or see this region's nucleotide sequence