Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00718 and MPMX20_00719 overlap by 24 nucleotides MPMX20_00719 and MPMX20_00720 are separated by 297 nucleotides MPMX20_00720 and MPMX20_00721 are separated by 87 nucleotides
MPMX20_00718: MPMX20_00718 - Proline/betaine transporter, at 740,674 to 741,996
_00718
MPMX20_00719: MPMX20_00719 - Succinate-acetate/proton symporter SatP, at 741,973 to 742,539
_00719
MPMX20_00720: MPMX20_00720 - Chaperone protein DnaK, at 742,837 to 744,750
_00720
MPMX20_00721: MPMX20_00721 - Chaperone protein DnaJ, at 744,838 to 745,983
_00721
Position (kb) 742
743
744
745 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 741.859 kb on - strand, within MPMX20_00718 at 741.901 kb on + strand at 741.958 kb on - strand at 741.964 kb on + strand at 742.063 kb on + strand, within MPMX20_00719 at 742.063 kb on + strand, within MPMX20_00719 at 742.063 kb on + strand, within MPMX20_00719 at 742.063 kb on + strand, within MPMX20_00719 at 742.121 kb on + strand, within MPMX20_00719 at 742.129 kb on - strand, within MPMX20_00719 at 742.173 kb on - strand, within MPMX20_00719 at 742.217 kb on - strand, within MPMX20_00719 at 742.307 kb on - strand, within MPMX20_00719 at 742.307 kb on - strand, within MPMX20_00719 at 742.313 kb on - strand, within MPMX20_00719 at 742.344 kb on + strand, within MPMX20_00719 at 742.344 kb on + strand, within MPMX20_00719 at 742.344 kb on + strand, within MPMX20_00719 at 742.345 kb on + strand, within MPMX20_00719 at 742.352 kb on + strand, within MPMX20_00719 at 742.352 kb on - strand, within MPMX20_00719 at 742.360 kb on - strand, within MPMX20_00719 at 742.464 kb on + strand, within MPMX20_00719 at 742.473 kb on + strand, within MPMX20_00719 at 742.481 kb on - strand, within MPMX20_00719 at 742.482 kb on - strand, within MPMX20_00719 at 742.532 kb on - strand at 742.532 kb on - strand at 742.534 kb on + strand at 742.534 kb on + strand at 742.542 kb on - strand at 742.542 kb on - strand at 742.584 kb on - strand at 742.597 kb on + strand at 742.622 kb on - strand at 742.644 kb on + strand at 742.685 kb on + strand at 742.693 kb on - strand at 742.693 kb on - strand at 742.700 kb on + strand at 742.731 kb on + strand at 742.731 kb on + strand at 742.738 kb on - strand at 742.739 kb on - strand at 744.347 kb on + strand, within MPMX20_00720 at 744.347 kb on + strand, within MPMX20_00720 at 744.533 kb on + strand, within MPMX20_00720 at 744.609 kb on + strand at 744.666 kb on + strand at 744.783 kb on + strand at 745.235 kb on - strand, within MPMX20_00721 at 745.409 kb on + strand, within MPMX20_00721 at 745.412 kb on - strand, within MPMX20_00721 at 745.445 kb on - strand, within MPMX20_00721 at 745.456 kb on + strand, within MPMX20_00721 at 745.554 kb on - strand, within MPMX20_00721 at 745.636 kb on + strand, within MPMX20_00721 at 745.644 kb on - strand, within MPMX20_00721 at 745.737 kb on - strand, within MPMX20_00721
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 741,859 - MPMX20_00718 0.90 +1.0 741,901 + -0.2 741,958 - -0.1 741,964 + -0.8 742,063 + MPMX20_00719 0.16 -0.8 742,063 + MPMX20_00719 0.16 -0.8 742,063 + MPMX20_00719 0.16 -0.4 742,063 + MPMX20_00719 0.16 -0.2 742,121 + MPMX20_00719 0.26 -2.4 742,129 - MPMX20_00719 0.28 +0.4 742,173 - MPMX20_00719 0.35 -0.0 742,217 - MPMX20_00719 0.43 -1.0 742,307 - MPMX20_00719 0.59 -0.7 742,307 - MPMX20_00719 0.59 +1.1 742,313 - MPMX20_00719 0.60 +0.9 742,344 + MPMX20_00719 0.65 +1.2 742,344 + MPMX20_00719 0.65 -1.2 742,344 + MPMX20_00719 0.65 -0.7 742,345 + MPMX20_00719 0.66 -1.0 742,352 + MPMX20_00719 0.67 +0.5 742,352 - MPMX20_00719 0.67 -1.5 742,360 - MPMX20_00719 0.68 +0.5 742,464 + MPMX20_00719 0.87 -0.1 742,473 + MPMX20_00719 0.88 -0.5 742,481 - MPMX20_00719 0.90 +1.1 742,482 - MPMX20_00719 0.90 +0.1 742,532 - -0.3 742,532 - +0.7 742,534 + -0.6 742,534 + -0.1 742,542 - +0.7 742,542 - +0.7 742,584 - -1.0 742,597 + +0.5 742,622 - +1.0 742,644 + -0.3 742,685 + -0.5 742,693 - +2.0 742,693 - +0.0 742,700 + +2.3 742,731 + -0.9 742,731 + -1.5 742,738 - -2.9 742,739 - -1.2 744,347 + MPMX20_00720 0.79 +1.0 744,347 + MPMX20_00720 0.79 -2.1 744,533 + MPMX20_00720 0.89 -0.6 744,609 + +0.1 744,666 + -0.0 744,783 + +0.1 745,235 - MPMX20_00721 0.35 -0.3 745,409 + MPMX20_00721 0.50 -1.5 745,412 - MPMX20_00721 0.50 -0.0 745,445 - MPMX20_00721 0.53 -1.0 745,456 + MPMX20_00721 0.54 -0.8 745,554 - MPMX20_00721 0.62 -1.2 745,636 + MPMX20_00721 0.70 -0.8 745,644 - MPMX20_00721 0.70 +1.1 745,737 - MPMX20_00721 0.78 -1.2
Or see this region's nucleotide sequence