Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00480

Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00477 and MPMX20_00478 are separated by 6 nucleotidesMPMX20_00478 and MPMX20_00479 are separated by 4 nucleotidesMPMX20_00479 and MPMX20_00480 are separated by 41 nucleotidesMPMX20_00480 and MPMX20_00481 are separated by 150 nucleotides MPMX20_00477: MPMX20_00477 - 30S ribosomal protein S6, at 492,023 to 492,418 _00477 MPMX20_00478: MPMX20_00478 - Primosomal replication protein N, at 492,425 to 492,739 _00478 MPMX20_00479: MPMX20_00479 - 30S ribosomal protein S18, at 492,744 to 492,971 _00479 MPMX20_00480: MPMX20_00480 - 50S ribosomal protein L9, at 493,013 to 493,462 _00480 MPMX20_00481: MPMX20_00481 - hypothetical protein, at 493,613 to 494,542 _00481 Position (kb) 493 494Strain fitness (log2 ratio) -3 -2 -1 0 1at 492.280 kb on + strand, within MPMX20_00477at 492.328 kb on + strand, within MPMX20_00477at 492.445 kb on + strandat 493.043 kb on + strandat 493.066 kb on + strand, within MPMX20_00480at 493.072 kb on + strand, within MPMX20_00480at 493.111 kb on + strand, within MPMX20_00480at 493.111 kb on + strand, within MPMX20_00480at 493.220 kb on + strand, within MPMX20_00480at 493.378 kb on + strand, within MPMX20_00480at 493.528 kb on - strandat 493.533 kb on + strandat 493.647 kb on + strandat 493.655 kb on - strandat 493.658 kb on + strandat 493.658 kb on + strandat 493.662 kb on + strandat 493.666 kb on - strandat 493.666 kb on - strandat 493.666 kb on - strandat 493.666 kb on - strandat 493.695 kb on - strandat 493.701 kb on - strandat 493.722 kb on + strand, within MPMX20_00481at 493.732 kb on + strand, within MPMX20_00481at 493.746 kb on - strand, within MPMX20_00481at 493.773 kb on - strand, within MPMX20_00481at 493.826 kb on + strand, within MPMX20_00481at 493.829 kb on - strand, within MPMX20_00481at 493.829 kb on - strand, within MPMX20_00481at 493.831 kb on + strand, within MPMX20_00481at 493.831 kb on + strand, within MPMX20_00481at 493.857 kb on - strand, within MPMX20_00481at 493.889 kb on - strand, within MPMX20_00481at 493.914 kb on + strand, within MPMX20_00481at 493.941 kb on - strand, within MPMX20_00481at 494.021 kb on + strand, within MPMX20_00481at 494.054 kb on + strand, within MPMX20_00481at 494.074 kb on - strand, within MPMX20_00481at 494.097 kb on + strand, within MPMX20_00481at 494.126 kb on + strand, within MPMX20_00481at 494.134 kb on - strand, within MPMX20_00481at 494.151 kb on + strand, within MPMX20_00481at 494.151 kb on + strand, within MPMX20_00481at 494.159 kb on - strand, within MPMX20_00481at 494.159 kb on - strand, within MPMX20_00481at 494.199 kb on - strand, within MPMX20_00481at 494.201 kb on - strand, within MPMX20_00481at 494.291 kb on + strand, within MPMX20_00481at 494.315 kb on + strand, within MPMX20_00481at 494.315 kb on + strand, within MPMX20_00481at 494.315 kb on + strand, within MPMX20_00481at 494.315 kb on + strand, within MPMX20_00481at 494.323 kb on - strand, within MPMX20_00481at 494.340 kb on + strand, within MPMX20_00481at 494.348 kb on + strand, within MPMX20_00481at 494.359 kb on + strand, within MPMX20_00481at 494.402 kb on + strand, within MPMX20_00481

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Per-strain Table

Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
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492,280 + MPMX20_00477 0.65 -0.6
492,328 + MPMX20_00477 0.77 -0.6
492,445 + -0.9
493,043 + +0.4
493,066 + MPMX20_00480 0.12 -3.1
493,072 + MPMX20_00480 0.13 -0.8
493,111 + MPMX20_00480 0.22 -0.9
493,111 + MPMX20_00480 0.22 -0.3
493,220 + MPMX20_00480 0.46 -0.9
493,378 + MPMX20_00480 0.81 -1.8
493,528 - +1.2
493,533 + -0.1
493,647 + -0.8
493,655 - +1.5
493,658 + +0.5
493,658 + -0.1
493,662 + -0.5
493,666 - -0.3
493,666 - +0.3
493,666 - +0.2
493,666 - -0.3
493,695 - +1.0
493,701 - +0.0
493,722 + MPMX20_00481 0.12 +0.4
493,732 + MPMX20_00481 0.13 -2.8
493,746 - MPMX20_00481 0.14 -0.5
493,773 - MPMX20_00481 0.17 +0.3
493,826 + MPMX20_00481 0.23 +0.1
493,829 - MPMX20_00481 0.23 +1.7
493,829 - MPMX20_00481 0.23 -0.2
493,831 + MPMX20_00481 0.23 +0.5
493,831 + MPMX20_00481 0.23 -0.3
493,857 - MPMX20_00481 0.26 -0.4
493,889 - MPMX20_00481 0.30 -0.6
493,914 + MPMX20_00481 0.32 -0.3
493,941 - MPMX20_00481 0.35 +0.1
494,021 + MPMX20_00481 0.44 +0.4
494,054 + MPMX20_00481 0.47 +0.6
494,074 - MPMX20_00481 0.50 -0.1
494,097 + MPMX20_00481 0.52 +0.3
494,126 + MPMX20_00481 0.55 -2.0
494,134 - MPMX20_00481 0.56 -0.0
494,151 + MPMX20_00481 0.58 -0.4
494,151 + MPMX20_00481 0.58 -0.4
494,159 - MPMX20_00481 0.59 -2.3
494,159 - MPMX20_00481 0.59 +1.7
494,199 - MPMX20_00481 0.63 -0.1
494,201 - MPMX20_00481 0.63 +0.1
494,291 + MPMX20_00481 0.73 +0.5
494,315 + MPMX20_00481 0.75 -0.3
494,315 + MPMX20_00481 0.75 +0.5
494,315 + MPMX20_00481 0.75 -0.4
494,315 + MPMX20_00481 0.75 +0.4
494,323 - MPMX20_00481 0.76 -1.2
494,340 + MPMX20_00481 0.78 -2.1
494,348 + MPMX20_00481 0.79 -0.8
494,359 + MPMX20_00481 0.80 -0.7
494,402 + MPMX20_00481 0.85 +0.4

Or see this region's nucleotide sequence