Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00388

Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00385 and MPMX20_00386 are separated by 20 nucleotidesMPMX20_00386 and MPMX20_00387 are separated by 11 nucleotidesMPMX20_00387 and MPMX20_00388 are separated by 53 nucleotidesMPMX20_00388 and MPMX20_00389 are separated by 87 nucleotidesMPMX20_00389 and MPMX20_00390 are separated by 40 nucleotidesMPMX20_00390 and MPMX20_00391 overlap by 4 nucleotides MPMX20_00385: MPMX20_00385 - hypothetical protein, at 405,677 to 406,540 _00385 MPMX20_00386: MPMX20_00386 - hypothetical protein, at 406,561 to 406,692 _00386 MPMX20_00387: MPMX20_00387 - hypothetical protein, at 406,704 to 406,814 _00387 MPMX20_00388: MPMX20_00388 - hypothetical protein, at 406,868 to 406,966 _00388 MPMX20_00389: MPMX20_00389 - hypothetical protein, at 407,054 to 407,440 _00389 MPMX20_00390: MPMX20_00390 - hypothetical protein, at 407,481 to 407,897 _00390 MPMX20_00391: MPMX20_00391 - hypothetical protein, at 407,894 to 408,397 _00391 Position (kb) 406 407Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 405.899 kb on - strand, within MPMX20_00385at 405.918 kb on + strand, within MPMX20_00385at 405.923 kb on + strand, within MPMX20_00385at 405.940 kb on - strand, within MPMX20_00385at 405.987 kb on + strand, within MPMX20_00385at 406.019 kb on + strand, within MPMX20_00385at 406.055 kb on + strand, within MPMX20_00385at 406.125 kb on + strand, within MPMX20_00385at 406.155 kb on + strand, within MPMX20_00385at 406.155 kb on + strand, within MPMX20_00385at 406.181 kb on - strand, within MPMX20_00385at 406.203 kb on - strand, within MPMX20_00385at 406.222 kb on - strand, within MPMX20_00385at 406.224 kb on + strand, within MPMX20_00385at 406.236 kb on + strand, within MPMX20_00385at 406.327 kb on + strand, within MPMX20_00385at 406.365 kb on + strand, within MPMX20_00385at 406.373 kb on - strand, within MPMX20_00385at 406.375 kb on + strand, within MPMX20_00385at 406.375 kb on + strand, within MPMX20_00385at 406.378 kb on - strand, within MPMX20_00385at 406.487 kb on + strandat 406.487 kb on + strandat 406.487 kb on + strandat 406.495 kb on - strandat 406.519 kb on + strandat 406.534 kb on + strandat 406.534 kb on + strandat 406.534 kb on + strandat 406.556 kb on + strandat 406.564 kb on - strandat 406.573 kb on - strandat 406.601 kb on - strand, within MPMX20_00386at 406.668 kb on + strand, within MPMX20_00386at 406.668 kb on + strand, within MPMX20_00386at 406.676 kb on - strand, within MPMX20_00386at 406.676 kb on - strand, within MPMX20_00386at 406.715 kb on + strand, within MPMX20_00387at 406.772 kb on - strand, within MPMX20_00387at 406.772 kb on - strand, within MPMX20_00387at 406.772 kb on - strand, within MPMX20_00387at 406.774 kb on + strand, within MPMX20_00387at 406.774 kb on + strand, within MPMX20_00387at 406.777 kb on - strand, within MPMX20_00387at 406.782 kb on - strand, within MPMX20_00387at 406.827 kb on + strandat 406.872 kb on + strandat 406.893 kb on + strand, within MPMX20_00388at 406.966 kb on + strandat 406.976 kb on + strandat 406.981 kb on + strandat 406.981 kb on + strandat 406.981 kb on + strandat 406.981 kb on + strandat 406.981 kb on + strandat 406.984 kb on - strandat 406.989 kb on - strandat 407.052 kb on - strandat 407.067 kb on + strandat 407.074 kb on + strandat 407.082 kb on - strandat 407.140 kb on + strand, within MPMX20_00389at 407.142 kb on - strand, within MPMX20_00389at 407.226 kb on - strand, within MPMX20_00389at 407.247 kb on + strand, within MPMX20_00389at 407.305 kb on + strand, within MPMX20_00389at 407.305 kb on + strand, within MPMX20_00389at 407.313 kb on - strand, within MPMX20_00389at 407.313 kb on - strand, within MPMX20_00389at 407.313 kb on - strand, within MPMX20_00389at 407.402 kb on - strandat 407.418 kb on - strandat 407.433 kb on - strandat 407.472 kb on - strandat 407.579 kb on - strand, within MPMX20_00390at 407.584 kb on - strand, within MPMX20_00390at 407.595 kb on - strand, within MPMX20_00390at 407.627 kb on - strand, within MPMX20_00390at 407.746 kb on + strand, within MPMX20_00390at 407.746 kb on + strand, within MPMX20_00390at 407.754 kb on - strand, within MPMX20_00390at 407.754 kb on - strand, within MPMX20_00390at 407.754 kb on - strand, within MPMX20_00390at 407.754 kb on - strand, within MPMX20_00390at 407.857 kb on + strandat 407.926 kb on + strandat 407.945 kb on + strand, within MPMX20_00391at 407.946 kb on + strand, within MPMX20_00391at 407.964 kb on + strand, within MPMX20_00391

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Per-strain Table

Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
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405,899 - MPMX20_00385 0.26 -0.6
405,918 + MPMX20_00385 0.28 -0.3
405,923 + MPMX20_00385 0.28 -0.2
405,940 - MPMX20_00385 0.30 -0.3
405,987 + MPMX20_00385 0.36 -0.8
406,019 + MPMX20_00385 0.40 -0.1
406,055 + MPMX20_00385 0.44 +0.1
406,125 + MPMX20_00385 0.52 -0.8
406,155 + MPMX20_00385 0.55 -0.5
406,155 + MPMX20_00385 0.55 -0.2
406,181 - MPMX20_00385 0.58 -1.0
406,203 - MPMX20_00385 0.61 -0.7
406,222 - MPMX20_00385 0.63 -0.4
406,224 + MPMX20_00385 0.63 -0.6
406,236 + MPMX20_00385 0.65 +0.5
406,327 + MPMX20_00385 0.75 -1.7
406,365 + MPMX20_00385 0.80 -0.6
406,373 - MPMX20_00385 0.81 +0.7
406,375 + MPMX20_00385 0.81 -0.3
406,375 + MPMX20_00385 0.81 -1.1
406,378 - MPMX20_00385 0.81 -0.5
406,487 + -0.1
406,487 + +0.3
406,487 + -0.4
406,495 - -0.1
406,519 + -0.6
406,534 + +0.7
406,534 + -1.5
406,534 + -0.7
406,556 + -0.4
406,564 - -0.6
406,573 - -3.5
406,601 - MPMX20_00386 0.30 -0.3
406,668 + MPMX20_00386 0.81 +0.1
406,668 + MPMX20_00386 0.81 -2.7
406,676 - MPMX20_00386 0.87 +0.3
406,676 - MPMX20_00386 0.87 -0.7
406,715 + MPMX20_00387 0.10 -0.6
406,772 - MPMX20_00387 0.61 -0.8
406,772 - MPMX20_00387 0.61 +0.3
406,772 - MPMX20_00387 0.61 +0.2
406,774 + MPMX20_00387 0.63 +0.8
406,774 + MPMX20_00387 0.63 -0.5
406,777 - MPMX20_00387 0.66 +0.1
406,782 - MPMX20_00387 0.70 -0.8
406,827 + -1.1
406,872 + -0.8
406,893 + MPMX20_00388 0.25 -1.2
406,966 + -1.2
406,976 + -0.7
406,981 + +0.2
406,981 + -0.1
406,981 + -0.7
406,981 + +1.3
406,981 + +0.4
406,984 - -1.3
406,989 - +0.5
407,052 - -0.3
407,067 + -0.8
407,074 + -1.4
407,082 - +1.3
407,140 + MPMX20_00389 0.22 -0.1
407,142 - MPMX20_00389 0.23 -0.5
407,226 - MPMX20_00389 0.44 +0.0
407,247 + MPMX20_00389 0.50 +1.7
407,305 + MPMX20_00389 0.65 -0.6
407,305 + MPMX20_00389 0.65 -0.8
407,313 - MPMX20_00389 0.67 -0.9
407,313 - MPMX20_00389 0.67 -1.9
407,313 - MPMX20_00389 0.67 +0.9
407,402 - +0.6
407,418 - +0.6
407,433 - -0.1
407,472 - -0.5
407,579 - MPMX20_00390 0.24 -0.2
407,584 - MPMX20_00390 0.25 -0.4
407,595 - MPMX20_00390 0.27 -0.5
407,627 - MPMX20_00390 0.35 -0.0
407,746 + MPMX20_00390 0.64 -0.2
407,746 + MPMX20_00390 0.64 -1.3
407,754 - MPMX20_00390 0.65 +1.0
407,754 - MPMX20_00390 0.65 +0.2
407,754 - MPMX20_00390 0.65 +0.9
407,754 - MPMX20_00390 0.65 +0.9
407,857 + +2.0
407,926 + +0.4
407,945 + MPMX20_00391 0.10 +0.8
407,946 + MPMX20_00391 0.10 +0.4
407,964 + MPMX20_00391 0.14 +0.6

Or see this region's nucleotide sequence