Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00384 and MPMX20_00385 are separated by 14 nucleotides MPMX20_00385 and MPMX20_00386 are separated by 20 nucleotides MPMX20_00386 and MPMX20_00387 are separated by 11 nucleotides MPMX20_00387 and MPMX20_00388 are separated by 53 nucleotides MPMX20_00388 and MPMX20_00389 are separated by 87 nucleotides MPMX20_00389 and MPMX20_00390 are separated by 40 nucleotides
MPMX20_00384: MPMX20_00384 - Major phosphate-irrepressible acid phosphatase, at 404,808 to 405,662
_00384
MPMX20_00385: MPMX20_00385 - hypothetical protein, at 405,677 to 406,540
_00385
MPMX20_00386: MPMX20_00386 - hypothetical protein, at 406,561 to 406,692
_00386
MPMX20_00387: MPMX20_00387 - hypothetical protein, at 406,704 to 406,814
_00387
MPMX20_00388: MPMX20_00388 - hypothetical protein, at 406,868 to 406,966
_00388
MPMX20_00389: MPMX20_00389 - hypothetical protein, at 407,054 to 407,440
_00389
MPMX20_00390: MPMX20_00390 - hypothetical protein, at 407,481 to 407,897
_00390
Position (kb) 406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 405.564 kb on + strand, within MPMX20_00384 at 405.607 kb on + strand at 405.609 kb on - strand at 405.609 kb on - strand at 405.612 kb on + strand at 405.612 kb on + strand at 405.612 kb on + strand at 405.620 kb on - strand at 405.620 kb on - strand at 405.620 kb on - strand at 405.620 kb on - strand at 405.620 kb on - strand at 405.642 kb on - strand at 405.652 kb on - strand at 405.652 kb on - strand at 405.654 kb on - strand at 405.656 kb on + strand at 405.656 kb on + strand at 405.659 kb on - strand at 405.663 kb on + strand at 405.667 kb on + strand at 405.697 kb on + strand at 405.712 kb on - strand at 405.718 kb on + strand at 405.735 kb on + strand at 405.736 kb on - strand at 405.736 kb on - strand at 405.743 kb on - strand at 405.769 kb on + strand, within MPMX20_00385 at 405.861 kb on + strand, within MPMX20_00385 at 405.899 kb on - strand, within MPMX20_00385 at 405.918 kb on + strand, within MPMX20_00385 at 405.923 kb on + strand, within MPMX20_00385 at 405.940 kb on - strand, within MPMX20_00385 at 405.987 kb on + strand, within MPMX20_00385 at 406.019 kb on + strand, within MPMX20_00385 at 406.055 kb on + strand, within MPMX20_00385 at 406.125 kb on + strand, within MPMX20_00385 at 406.155 kb on + strand, within MPMX20_00385 at 406.155 kb on + strand, within MPMX20_00385 at 406.181 kb on - strand, within MPMX20_00385 at 406.203 kb on - strand, within MPMX20_00385 at 406.222 kb on - strand, within MPMX20_00385 at 406.224 kb on + strand, within MPMX20_00385 at 406.236 kb on + strand, within MPMX20_00385 at 406.327 kb on + strand, within MPMX20_00385 at 406.365 kb on + strand, within MPMX20_00385 at 406.373 kb on - strand, within MPMX20_00385 at 406.375 kb on + strand, within MPMX20_00385 at 406.375 kb on + strand, within MPMX20_00385 at 406.378 kb on - strand, within MPMX20_00385 at 406.487 kb on + strand at 406.487 kb on + strand at 406.487 kb on + strand at 406.495 kb on - strand at 406.519 kb on + strand at 406.534 kb on + strand at 406.534 kb on + strand at 406.534 kb on + strand at 406.556 kb on + strand at 406.564 kb on - strand at 406.573 kb on - strand at 406.601 kb on - strand, within MPMX20_00386 at 406.668 kb on + strand, within MPMX20_00386 at 406.668 kb on + strand, within MPMX20_00386 at 406.676 kb on - strand, within MPMX20_00386 at 406.676 kb on - strand, within MPMX20_00386 at 406.715 kb on + strand, within MPMX20_00387 at 406.772 kb on - strand, within MPMX20_00387 at 406.772 kb on - strand, within MPMX20_00387 at 406.772 kb on - strand, within MPMX20_00387 at 406.774 kb on + strand, within MPMX20_00387 at 406.774 kb on + strand, within MPMX20_00387 at 406.777 kb on - strand, within MPMX20_00387 at 406.782 kb on - strand, within MPMX20_00387 at 406.827 kb on + strand at 406.872 kb on + strand at 406.893 kb on + strand, within MPMX20_00388 at 406.966 kb on + strand at 406.976 kb on + strand at 406.981 kb on + strand at 406.981 kb on + strand at 406.981 kb on + strand at 406.981 kb on + strand at 406.981 kb on + strand at 406.984 kb on - strand at 406.989 kb on - strand at 407.052 kb on - strand at 407.067 kb on + strand at 407.074 kb on + strand at 407.082 kb on - strand at 407.140 kb on + strand, within MPMX20_00389 at 407.142 kb on - strand, within MPMX20_00389 at 407.226 kb on - strand, within MPMX20_00389 at 407.247 kb on + strand, within MPMX20_00389 at 407.305 kb on + strand, within MPMX20_00389 at 407.305 kb on + strand, within MPMX20_00389 at 407.313 kb on - strand, within MPMX20_00389 at 407.313 kb on - strand, within MPMX20_00389 at 407.313 kb on - strand, within MPMX20_00389 at 407.402 kb on - strand at 407.418 kb on - strand at 407.433 kb on - strand at 407.472 kb on - strand at 407.579 kb on - strand, within MPMX20_00390 at 407.584 kb on - strand, within MPMX20_00390 at 407.595 kb on - strand, within MPMX20_00390 at 407.627 kb on - strand, within MPMX20_00390
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 405,564 + MPMX20_00384 0.88 +0.3 405,607 + -0.2 405,609 - -0.3 405,609 - +0.7 405,612 + +2.0 405,612 + +0.2 405,612 + -1.4 405,620 - -0.0 405,620 - +1.2 405,620 - -0.6 405,620 - +0.1 405,620 - +0.2 405,642 - -0.0 405,652 - +0.3 405,652 - -0.2 405,654 - -0.8 405,656 + -0.7 405,656 + -0.4 405,659 - -1.1 405,663 + +0.2 405,667 + -0.7 405,697 + -0.3 405,712 - +1.2 405,718 + -0.5 405,735 + -1.8 405,736 - +0.0 405,736 - +1.7 405,743 - +0.4 405,769 + MPMX20_00385 0.11 -0.1 405,861 + MPMX20_00385 0.21 +0.2 405,899 - MPMX20_00385 0.26 -0.6 405,918 + MPMX20_00385 0.28 -0.3 405,923 + MPMX20_00385 0.28 -0.2 405,940 - MPMX20_00385 0.30 -0.3 405,987 + MPMX20_00385 0.36 -0.8 406,019 + MPMX20_00385 0.40 -0.1 406,055 + MPMX20_00385 0.44 +0.1 406,125 + MPMX20_00385 0.52 -0.8 406,155 + MPMX20_00385 0.55 -0.5 406,155 + MPMX20_00385 0.55 -0.2 406,181 - MPMX20_00385 0.58 -1.0 406,203 - MPMX20_00385 0.61 -0.7 406,222 - MPMX20_00385 0.63 -0.4 406,224 + MPMX20_00385 0.63 -0.6 406,236 + MPMX20_00385 0.65 +0.5 406,327 + MPMX20_00385 0.75 -1.7 406,365 + MPMX20_00385 0.80 -0.6 406,373 - MPMX20_00385 0.81 +0.7 406,375 + MPMX20_00385 0.81 -0.3 406,375 + MPMX20_00385 0.81 -1.1 406,378 - MPMX20_00385 0.81 -0.5 406,487 + -0.1 406,487 + +0.3 406,487 + -0.4 406,495 - -0.1 406,519 + -0.6 406,534 + +0.7 406,534 + -1.5 406,534 + -0.7 406,556 + -0.4 406,564 - -0.6 406,573 - -3.5 406,601 - MPMX20_00386 0.30 -0.3 406,668 + MPMX20_00386 0.81 +0.1 406,668 + MPMX20_00386 0.81 -2.7 406,676 - MPMX20_00386 0.87 +0.3 406,676 - MPMX20_00386 0.87 -0.7 406,715 + MPMX20_00387 0.10 -0.6 406,772 - MPMX20_00387 0.61 -0.8 406,772 - MPMX20_00387 0.61 +0.3 406,772 - MPMX20_00387 0.61 +0.2 406,774 + MPMX20_00387 0.63 +0.8 406,774 + MPMX20_00387 0.63 -0.5 406,777 - MPMX20_00387 0.66 +0.1 406,782 - MPMX20_00387 0.70 -0.8 406,827 + -1.1 406,872 + -0.8 406,893 + MPMX20_00388 0.25 -1.2 406,966 + -1.2 406,976 + -0.7 406,981 + +0.2 406,981 + -0.1 406,981 + -0.7 406,981 + +1.3 406,981 + +0.4 406,984 - -1.3 406,989 - +0.5 407,052 - -0.3 407,067 + -0.8 407,074 + -1.4 407,082 - +1.3 407,140 + MPMX20_00389 0.22 -0.1 407,142 - MPMX20_00389 0.23 -0.5 407,226 - MPMX20_00389 0.44 +0.0 407,247 + MPMX20_00389 0.50 +1.7 407,305 + MPMX20_00389 0.65 -0.6 407,305 + MPMX20_00389 0.65 -0.8 407,313 - MPMX20_00389 0.67 -0.9 407,313 - MPMX20_00389 0.67 -1.9 407,313 - MPMX20_00389 0.67 +0.9 407,402 - +0.6 407,418 - +0.6 407,433 - -0.1 407,472 - -0.5 407,579 - MPMX20_00390 0.24 -0.2 407,584 - MPMX20_00390 0.25 -0.4 407,595 - MPMX20_00390 0.27 -0.5 407,627 - MPMX20_00390 0.35 -0.0
Or see this region's nucleotide sequence