Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00188 and MPMX20_00189 are separated by 91 nucleotides MPMX20_00189 and MPMX20_00190 are separated by 620 nucleotides MPMX20_00190 and MPMX20_00191 are separated by 161 nucleotides
MPMX20_00188: MPMX20_00188 - Kdo(2)-lipid A phosphoethanolamine 7''-transferase, at 195,895 to 197,589
_00188
MPMX20_00189: MPMX20_00189 - tRNA-Pro, at 197,681 to 197,757
_00189
MPMX20_00190: MPMX20_00190 - Periplasmic dipeptide transport protein, at 198,378 to 199,985
_00190
MPMX20_00191: MPMX20_00191 - Dipeptide transport system permease protein DppB, at 200,147 to 201,166
_00191
Position (kb) 198
199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 197.421 kb on + strand at 197.422 kb on + strand at 197.423 kb on + strand at 197.471 kb on + strand at 197.476 kb on - strand at 197.479 kb on - strand at 197.481 kb on + strand at 197.491 kb on + strand at 197.499 kb on - strand at 197.505 kb on + strand at 197.505 kb on + strand at 197.505 kb on + strand at 197.506 kb on + strand at 197.513 kb on - strand at 197.514 kb on - strand at 197.514 kb on - strand at 197.514 kb on - strand at 197.514 kb on - strand at 197.579 kb on - strand at 197.579 kb on - strand at 197.597 kb on + strand at 197.652 kb on + strand at 197.660 kb on - strand at 197.843 kb on + strand at 197.929 kb on + strand at 197.984 kb on + strand at 197.989 kb on + strand at 198.028 kb on + strand at 198.150 kb on - strand at 198.154 kb on + strand at 198.154 kb on + strand at 198.154 kb on + strand at 198.154 kb on + strand at 198.154 kb on + strand at 198.154 kb on + strand at 198.162 kb on - strand at 198.173 kb on + strand at 198.181 kb on - strand at 198.254 kb on - strand at 198.296 kb on + strand at 198.301 kb on + strand at 198.337 kb on + strand at 198.345 kb on - strand at 198.345 kb on - strand at 198.345 kb on - strand at 198.353 kb on - strand at 198.363 kb on + strand at 198.397 kb on + strand at 198.412 kb on + strand at 198.415 kb on - strand at 198.415 kb on - strand at 198.420 kb on - strand at 198.425 kb on - strand at 198.426 kb on - strand at 198.426 kb on - strand at 198.440 kb on - strand at 198.478 kb on + strand at 198.486 kb on - strand at 198.512 kb on + strand at 198.515 kb on + strand at 198.523 kb on - strand at 198.544 kb on + strand, within MPMX20_00190 at 198.544 kb on + strand, within MPMX20_00190 at 198.552 kb on - strand, within MPMX20_00190 at 198.552 kb on - strand, within MPMX20_00190 at 198.555 kb on + strand, within MPMX20_00190 at 198.563 kb on - strand, within MPMX20_00190 at 198.638 kb on + strand, within MPMX20_00190 at 198.644 kb on + strand, within MPMX20_00190 at 198.644 kb on + strand, within MPMX20_00190 at 198.644 kb on + strand, within MPMX20_00190 at 198.644 kb on + strand, within MPMX20_00190 at 198.644 kb on + strand, within MPMX20_00190 at 198.644 kb on + strand, within MPMX20_00190 at 198.646 kb on - strand, within MPMX20_00190 at 198.652 kb on + strand, within MPMX20_00190 at 198.652 kb on - strand, within MPMX20_00190 at 198.652 kb on - strand, within MPMX20_00190 at 198.652 kb on - strand, within MPMX20_00190 at 198.652 kb on - strand, within MPMX20_00190 at 198.652 kb on - strand, within MPMX20_00190 at 198.652 kb on - strand, within MPMX20_00190 at 198.652 kb on - strand, within MPMX20_00190 at 198.652 kb on - strand, within MPMX20_00190 at 198.653 kb on - strand, within MPMX20_00190 at 198.660 kb on - strand, within MPMX20_00190 at 198.662 kb on + strand, within MPMX20_00190 at 198.734 kb on + strand, within MPMX20_00190 at 198.793 kb on + strand, within MPMX20_00190 at 198.801 kb on - strand, within MPMX20_00190 at 198.816 kb on + strand, within MPMX20_00190 at 198.816 kb on + strand, within MPMX20_00190 at 198.899 kb on - strand, within MPMX20_00190 at 198.906 kb on + strand, within MPMX20_00190 at 198.933 kb on - strand, within MPMX20_00190 at 198.982 kb on + strand, within MPMX20_00190 at 199.003 kb on + strand, within MPMX20_00190 at 199.003 kb on + strand, within MPMX20_00190 at 199.038 kb on - strand, within MPMX20_00190 at 199.060 kb on - strand, within MPMX20_00190 at 199.111 kb on - strand, within MPMX20_00190 at 199.117 kb on + strand, within MPMX20_00190 at 199.174 kb on - strand, within MPMX20_00190 at 199.242 kb on + strand, within MPMX20_00190 at 199.318 kb on + strand, within MPMX20_00190 at 199.319 kb on - strand, within MPMX20_00190 at 199.324 kb on - strand, within MPMX20_00190 at 199.324 kb on - strand, within MPMX20_00190 at 199.428 kb on - strand, within MPMX20_00190 at 199.460 kb on - strand, within MPMX20_00190 at 199.471 kb on + strand, within MPMX20_00190 at 199.471 kb on - strand, within MPMX20_00190 at 199.476 kb on + strand, within MPMX20_00190 at 199.476 kb on + strand, within MPMX20_00190 at 199.484 kb on - strand, within MPMX20_00190 at 199.510 kb on - strand, within MPMX20_00190 at 199.510 kb on - strand, within MPMX20_00190 at 199.513 kb on + strand, within MPMX20_00190 at 199.521 kb on - strand, within MPMX20_00190 at 199.521 kb on - strand, within MPMX20_00190 at 199.534 kb on + strand, within MPMX20_00190 at 199.576 kb on - strand, within MPMX20_00190 at 199.584 kb on - strand, within MPMX20_00190 at 199.685 kb on + strand, within MPMX20_00190 at 199.698 kb on + strand, within MPMX20_00190 at 199.713 kb on + strand, within MPMX20_00190 at 199.718 kb on + strand, within MPMX20_00190 at 199.726 kb on - strand, within MPMX20_00190 at 199.726 kb on - strand, within MPMX20_00190 at 199.726 kb on - strand, within MPMX20_00190 at 199.790 kb on - strand, within MPMX20_00190 at 199.852 kb on - strand at 199.852 kb on - strand at 199.880 kb on + strand at 199.950 kb on + strand at 199.994 kb on + strand at 200.007 kb on + strand at 200.019 kb on + strand at 200.019 kb on + strand at 200.019 kb on + strand at 200.019 kb on + strand at 200.019 kb on + strand at 200.019 kb on + strand at 200.019 kb on + strand at 200.019 kb on + strand at 200.019 kb on + strand at 200.019 kb on + strand at 200.019 kb on + strand at 200.019 kb on + strand at 200.019 kb on + strand at 200.019 kb on + strand at 200.019 kb on + strand at 200.019 kb on + strand at 200.019 kb on + strand at 200.027 kb on - strand at 200.027 kb on - strand at 200.027 kb on - strand at 200.027 kb on - strand at 200.027 kb on - strand at 200.027 kb on - strand at 200.027 kb on - strand at 200.027 kb on - strand at 200.052 kb on + strand at 200.052 kb on + strand at 200.052 kb on + strand at 200.052 kb on + strand at 200.052 kb on + strand at 200.052 kb on + strand at 200.052 kb on + strand at 200.060 kb on - strand at 200.060 kb on - strand at 200.060 kb on - strand at 200.060 kb on - strand at 200.064 kb on + strand at 200.070 kb on - strand at 200.097 kb on + strand at 200.105 kb on - strand at 200.121 kb on - strand at 200.169 kb on + strand at 200.177 kb on - strand at 200.299 kb on + strand, within MPMX20_00191 at 200.310 kb on + strand, within MPMX20_00191 at 200.315 kb on + strand, within MPMX20_00191 at 200.318 kb on - strand, within MPMX20_00191 at 200.328 kb on - strand, within MPMX20_00191 at 200.418 kb on + strand, within MPMX20_00191 at 200.485 kb on + strand, within MPMX20_00191 at 200.493 kb on - strand, within MPMX20_00191 at 200.508 kb on - strand, within MPMX20_00191 at 200.563 kb on + strand, within MPMX20_00191 at 200.610 kb on - strand, within MPMX20_00191 at 200.631 kb on - strand, within MPMX20_00191 at 200.725 kb on - strand, within MPMX20_00191 at 200.731 kb on + strand, within MPMX20_00191 at 200.757 kb on + strand, within MPMX20_00191 at 200.784 kb on + strand, within MPMX20_00191 at 200.818 kb on - strand, within MPMX20_00191 at 200.831 kb on - strand, within MPMX20_00191 at 200.869 kb on + strand, within MPMX20_00191 at 200.876 kb on + strand, within MPMX20_00191 at 200.884 kb on - strand, within MPMX20_00191 at 200.901 kb on - strand, within MPMX20_00191 at 200.914 kb on + strand, within MPMX20_00191 at 200.914 kb on + strand, within MPMX20_00191 at 200.914 kb on + strand, within MPMX20_00191 at 200.919 kb on + strand, within MPMX20_00191 at 200.922 kb on - strand, within MPMX20_00191 at 200.956 kb on + strand, within MPMX20_00191
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 197,421 + -0.2 197,422 + +2.6 197,423 + +1.1 197,471 + -0.3 197,476 - +2.0 197,479 - -0.6 197,481 + -0.1 197,491 + +0.1 197,499 - -0.6 197,505 + +0.9 197,505 + -0.1 197,505 + -1.7 197,506 + +0.4 197,513 - +0.7 197,514 - -0.1 197,514 - +0.0 197,514 - +0.0 197,514 - -2.8 197,579 - -1.5 197,579 - +0.2 197,597 + +0.4 197,652 + -0.4 197,660 - -0.3 197,843 + -1.7 197,929 + -0.0 197,984 + -0.0 197,989 + +2.0 198,028 + -1.0 198,150 - -0.2 198,154 + -0.1 198,154 + -0.9 198,154 + -2.0 198,154 + +0.4 198,154 + -0.3 198,154 + -0.4 198,162 - -0.3 198,173 + +1.2 198,181 - +0.4 198,254 - -0.6 198,296 + +0.4 198,301 + -1.6 198,337 + -1.2 198,345 - +0.4 198,345 - -0.9 198,345 - -1.5 198,353 - -1.4 198,363 + +1.5 198,397 + +2.7 198,412 + -0.4 198,415 - -0.3 198,415 - -0.3 198,420 - +0.0 198,425 - +0.9 198,426 - +0.4 198,426 - +0.9 198,440 - -0.4 198,478 + +0.3 198,486 - +0.6 198,512 + -1.9 198,515 + -0.1 198,523 - -2.0 198,544 + MPMX20_00190 0.10 -0.9 198,544 + MPMX20_00190 0.10 -0.4 198,552 - MPMX20_00190 0.11 +1.1 198,552 - MPMX20_00190 0.11 -0.0 198,555 + MPMX20_00190 0.11 -0.1 198,563 - MPMX20_00190 0.12 +0.3 198,638 + MPMX20_00190 0.16 -0.2 198,644 + MPMX20_00190 0.17 +0.6 198,644 + MPMX20_00190 0.17 -0.2 198,644 + MPMX20_00190 0.17 -0.2 198,644 + MPMX20_00190 0.17 -1.5 198,644 + MPMX20_00190 0.17 -0.8 198,644 + MPMX20_00190 0.17 -0.1 198,646 - MPMX20_00190 0.17 -0.6 198,652 + MPMX20_00190 0.17 +0.0 198,652 - MPMX20_00190 0.17 -0.2 198,652 - MPMX20_00190 0.17 +0.4 198,652 - MPMX20_00190 0.17 +0.0 198,652 - MPMX20_00190 0.17 -0.0 198,652 - MPMX20_00190 0.17 +3.0 198,652 - MPMX20_00190 0.17 +1.3 198,652 - MPMX20_00190 0.17 +0.2 198,652 - MPMX20_00190 0.17 +0.3 198,653 - MPMX20_00190 0.17 +1.7 198,660 - MPMX20_00190 0.18 +0.0 198,662 + MPMX20_00190 0.18 -0.5 198,734 + MPMX20_00190 0.22 +1.4 198,793 + MPMX20_00190 0.26 -1.5 198,801 - MPMX20_00190 0.26 +0.3 198,816 + MPMX20_00190 0.27 -0.9 198,816 + MPMX20_00190 0.27 -0.7 198,899 - MPMX20_00190 0.32 +0.3 198,906 + MPMX20_00190 0.33 +0.6 198,933 - MPMX20_00190 0.35 +1.0 198,982 + MPMX20_00190 0.38 +1.0 199,003 + MPMX20_00190 0.39 +0.7 199,003 + MPMX20_00190 0.39 +0.5 199,038 - MPMX20_00190 0.41 -0.3 199,060 - MPMX20_00190 0.42 +1.0 199,111 - MPMX20_00190 0.46 +0.3 199,117 + MPMX20_00190 0.46 +0.0 199,174 - MPMX20_00190 0.50 -0.8 199,242 + MPMX20_00190 0.54 -0.6 199,318 + MPMX20_00190 0.58 -0.0 199,319 - MPMX20_00190 0.59 -1.0 199,324 - MPMX20_00190 0.59 +0.3 199,324 - MPMX20_00190 0.59 -0.1 199,428 - MPMX20_00190 0.65 -1.2 199,460 - MPMX20_00190 0.67 -0.3 199,471 + MPMX20_00190 0.68 +0.1 199,471 - MPMX20_00190 0.68 -0.7 199,476 + MPMX20_00190 0.68 -1.9 199,476 + MPMX20_00190 0.68 +3.0 199,484 - MPMX20_00190 0.69 +0.2 199,510 - MPMX20_00190 0.70 +0.5 199,510 - MPMX20_00190 0.70 +2.3 199,513 + MPMX20_00190 0.71 -0.1 199,521 - MPMX20_00190 0.71 -0.6 199,521 - MPMX20_00190 0.71 +1.1 199,534 + MPMX20_00190 0.72 -0.2 199,576 - MPMX20_00190 0.75 +1.1 199,584 - MPMX20_00190 0.75 -2.2 199,685 + MPMX20_00190 0.81 -0.6 199,698 + MPMX20_00190 0.82 +0.1 199,713 + MPMX20_00190 0.83 +2.3 199,718 + MPMX20_00190 0.83 -2.4 199,726 - MPMX20_00190 0.84 -0.8 199,726 - MPMX20_00190 0.84 +0.4 199,726 - MPMX20_00190 0.84 -1.5 199,790 - MPMX20_00190 0.88 -1.6 199,852 - +0.2 199,852 - -0.8 199,880 + +0.0 199,950 + +0.6 199,994 + -0.1 200,007 + -1.7 200,019 + -0.7 200,019 + +0.1 200,019 + -0.3 200,019 + +0.3 200,019 + +0.4 200,019 + +0.6 200,019 + +1.4 200,019 + -0.6 200,019 + -0.2 200,019 + +0.4 200,019 + -1.1 200,019 + -0.2 200,019 + -0.5 200,019 + -2.0 200,019 + -0.4 200,019 + +0.2 200,019 + -0.1 200,027 - -0.5 200,027 - +0.3 200,027 - +0.7 200,027 - +0.0 200,027 - +0.4 200,027 - +0.4 200,027 - +1.4 200,027 - -0.1 200,052 + +0.2 200,052 + -1.0 200,052 + -0.5 200,052 + +0.4 200,052 + -0.1 200,052 + -2.0 200,052 + -0.4 200,060 - +0.1 200,060 - -1.1 200,060 - -1.1 200,060 - -0.1 200,064 + +0.3 200,070 - +0.2 200,097 + -2.5 200,105 - -0.3 200,121 - -0.3 200,169 + -3.2 200,177 - +0.7 200,299 + MPMX20_00191 0.15 +0.8 200,310 + MPMX20_00191 0.16 +1.0 200,315 + MPMX20_00191 0.16 -0.1 200,318 - MPMX20_00191 0.17 +0.1 200,328 - MPMX20_00191 0.18 -0.8 200,418 + MPMX20_00191 0.27 -1.2 200,485 + MPMX20_00191 0.33 +1.0 200,493 - MPMX20_00191 0.34 +1.2 200,508 - MPMX20_00191 0.35 +1.4 200,563 + MPMX20_00191 0.41 -1.3 200,610 - MPMX20_00191 0.45 +0.4 200,631 - MPMX20_00191 0.47 -1.4 200,725 - MPMX20_00191 0.57 -0.5 200,731 + MPMX20_00191 0.57 +0.4 200,757 + MPMX20_00191 0.60 -0.8 200,784 + MPMX20_00191 0.62 +1.0 200,818 - MPMX20_00191 0.66 +0.3 200,831 - MPMX20_00191 0.67 -0.5 200,869 + MPMX20_00191 0.71 -2.1 200,876 + MPMX20_00191 0.71 +0.4 200,884 - MPMX20_00191 0.72 +0.0 200,901 - MPMX20_00191 0.74 +0.4 200,914 + MPMX20_00191 0.75 +0.7 200,914 + MPMX20_00191 0.75 -0.2 200,914 + MPMX20_00191 0.75 -0.1 200,919 + MPMX20_00191 0.76 -0.9 200,922 - MPMX20_00191 0.76 +0.5 200,956 + MPMX20_00191 0.79 -1.7
Or see this region's nucleotide sequence