Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00106

Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00105 and MPMX20_00106 are separated by 2 nucleotidesMPMX20_00106 and MPMX20_00107 overlap by 1 nucleotides MPMX20_00105: MPMX20_00105 - N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase, at 105,468 to 106,565 _00105 MPMX20_00106: MPMX20_00106 - Lipopolysaccharide core biosynthesis protein RfaG, at 106,568 to 107,695 _00106 MPMX20_00107: MPMX20_00107 - Lipopolysaccharide core heptosyltransferase RfaQ, at 107,695 to 108,759 _00107 Position (kb) 106 107 108Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 105.609 kb on - strand, within MPMX20_00105at 105.650 kb on + strand, within MPMX20_00105at 105.650 kb on + strand, within MPMX20_00105at 105.650 kb on + strand, within MPMX20_00105at 105.658 kb on - strand, within MPMX20_00105at 105.658 kb on - strand, within MPMX20_00105at 105.658 kb on - strand, within MPMX20_00105at 105.658 kb on - strand, within MPMX20_00105at 105.658 kb on - strand, within MPMX20_00105at 105.673 kb on + strand, within MPMX20_00105at 105.688 kb on + strand, within MPMX20_00105at 105.738 kb on - strand, within MPMX20_00105at 105.754 kb on + strand, within MPMX20_00105at 105.754 kb on + strand, within MPMX20_00105at 105.754 kb on + strand, within MPMX20_00105at 105.754 kb on + strand, within MPMX20_00105at 105.762 kb on - strand, within MPMX20_00105at 105.762 kb on - strand, within MPMX20_00105at 105.762 kb on - strand, within MPMX20_00105at 105.762 kb on - strand, within MPMX20_00105at 105.762 kb on - strand, within MPMX20_00105at 105.762 kb on - strand, within MPMX20_00105at 105.767 kb on + strand, within MPMX20_00105at 105.772 kb on + strand, within MPMX20_00105at 105.775 kb on - strand, within MPMX20_00105at 105.778 kb on + strand, within MPMX20_00105at 105.780 kb on - strand, within MPMX20_00105at 105.902 kb on + strand, within MPMX20_00105at 105.902 kb on + strand, within MPMX20_00105at 105.902 kb on + strand, within MPMX20_00105at 105.910 kb on - strand, within MPMX20_00105at 105.972 kb on - strand, within MPMX20_00105at 105.972 kb on - strand, within MPMX20_00105at 105.972 kb on - strand, within MPMX20_00105at 105.972 kb on - strand, within MPMX20_00105at 105.976 kb on - strand, within MPMX20_00105at 106.058 kb on + strand, within MPMX20_00105at 106.066 kb on - strand, within MPMX20_00105at 106.104 kb on + strand, within MPMX20_00105at 106.151 kb on + strand, within MPMX20_00105at 106.151 kb on + strand, within MPMX20_00105at 106.151 kb on + strand, within MPMX20_00105at 106.151 kb on + strand, within MPMX20_00105at 106.151 kb on + strand, within MPMX20_00105at 106.151 kb on + strand, within MPMX20_00105at 106.159 kb on - strand, within MPMX20_00105at 106.159 kb on - strand, within MPMX20_00105at 106.218 kb on + strand, within MPMX20_00105at 106.218 kb on + strand, within MPMX20_00105at 106.219 kb on + strand, within MPMX20_00105at 106.227 kb on - strand, within MPMX20_00105at 106.227 kb on - strand, within MPMX20_00105at 106.227 kb on - strand, within MPMX20_00105at 106.241 kb on + strand, within MPMX20_00105at 106.241 kb on + strand, within MPMX20_00105at 106.241 kb on + strand, within MPMX20_00105at 106.249 kb on - strand, within MPMX20_00105at 106.249 kb on - strand, within MPMX20_00105at 106.249 kb on - strand, within MPMX20_00105at 106.249 kb on - strand, within MPMX20_00105at 106.249 kb on - strand, within MPMX20_00105at 106.270 kb on + strand, within MPMX20_00105at 106.320 kb on - strand, within MPMX20_00105at 106.322 kb on + strand, within MPMX20_00105at 106.330 kb on + strand, within MPMX20_00105at 106.360 kb on + strand, within MPMX20_00105at 106.370 kb on + strand, within MPMX20_00105at 106.375 kb on + strand, within MPMX20_00105at 106.434 kb on - strand, within MPMX20_00105at 106.438 kb on + strand, within MPMX20_00105at 106.456 kb on + strandat 106.503 kb on + strandat 106.640 kb on + strandat 106.681 kb on + strand, within MPMX20_00106at 106.688 kb on + strand, within MPMX20_00106at 106.688 kb on - strand, within MPMX20_00106at 106.696 kb on - strand, within MPMX20_00106at 106.696 kb on - strand, within MPMX20_00106at 106.696 kb on - strand, within MPMX20_00106at 106.710 kb on - strand, within MPMX20_00106at 106.731 kb on - strand, within MPMX20_00106at 106.741 kb on - strand, within MPMX20_00106at 106.781 kb on + strand, within MPMX20_00106at 106.814 kb on + strand, within MPMX20_00106at 106.839 kb on + strand, within MPMX20_00106at 106.849 kb on + strand, within MPMX20_00106at 106.858 kb on + strand, within MPMX20_00106at 106.959 kb on - strand, within MPMX20_00106at 106.971 kb on + strand, within MPMX20_00106at 106.971 kb on + strand, within MPMX20_00106at 106.979 kb on - strand, within MPMX20_00106at 106.979 kb on - strand, within MPMX20_00106at 106.979 kb on - strand, within MPMX20_00106at 106.979 kb on - strand, within MPMX20_00106at 107.019 kb on - strand, within MPMX20_00106at 107.028 kb on + strand, within MPMX20_00106at 107.067 kb on + strand, within MPMX20_00106at 107.113 kb on + strand, within MPMX20_00106at 107.113 kb on + strand, within MPMX20_00106at 107.113 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.133 kb on - strand, within MPMX20_00106at 107.133 kb on - strand, within MPMX20_00106at 107.133 kb on - strand, within MPMX20_00106at 107.133 kb on - strand, within MPMX20_00106at 107.133 kb on - strand, within MPMX20_00106at 107.439 kb on + strand, within MPMX20_00106at 107.447 kb on - strand, within MPMX20_00106at 107.479 kb on + strand, within MPMX20_00106at 107.579 kb on + strand, within MPMX20_00106at 107.601 kb on - strandat 107.699 kb on + strandat 107.793 kb on - strandat 107.887 kb on + strand, within MPMX20_00107at 108.046 kb on - strand, within MPMX20_00107at 108.063 kb on + strand, within MPMX20_00107at 108.075 kb on + strand, within MPMX20_00107at 108.083 kb on - strand, within MPMX20_00107at 108.083 kb on - strand, within MPMX20_00107at 108.113 kb on - strand, within MPMX20_00107at 108.140 kb on - strand, within MPMX20_00107at 108.152 kb on - strand, within MPMX20_00107at 108.188 kb on + strand, within MPMX20_00107at 108.188 kb on + strand, within MPMX20_00107at 108.232 kb on - strand, within MPMX20_00107at 108.318 kb on - strand, within MPMX20_00107at 108.403 kb on + strand, within MPMX20_00107at 108.413 kb on - strand, within MPMX20_00107at 108.440 kb on - strand, within MPMX20_00107at 108.459 kb on + strand, within MPMX20_00107at 108.473 kb on + strand, within MPMX20_00107at 108.494 kb on - strand, within MPMX20_00107at 108.494 kb on - strand, within MPMX20_00107at 108.507 kb on - strand, within MPMX20_00107at 108.525 kb on + strand, within MPMX20_00107at 108.551 kb on - strand, within MPMX20_00107at 108.555 kb on + strand, within MPMX20_00107at 108.571 kb on - strand, within MPMX20_00107

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
remove
105,609 - MPMX20_00105 0.13 -0.9
105,650 + MPMX20_00105 0.17 -0.8
105,650 + MPMX20_00105 0.17 -0.6
105,650 + MPMX20_00105 0.17 -1.6
105,658 - MPMX20_00105 0.17 -2.4
105,658 - MPMX20_00105 0.17 -0.5
105,658 - MPMX20_00105 0.17 -0.0
105,658 - MPMX20_00105 0.17 -0.8
105,658 - MPMX20_00105 0.17 -2.2
105,673 + MPMX20_00105 0.19 +0.3
105,688 + MPMX20_00105 0.20 -1.1
105,738 - MPMX20_00105 0.25 -2.2
105,754 + MPMX20_00105 0.26 +0.0
105,754 + MPMX20_00105 0.26 +0.3
105,754 + MPMX20_00105 0.26 -1.0
105,754 + MPMX20_00105 0.26 +0.0
105,762 - MPMX20_00105 0.27 -0.7
105,762 - MPMX20_00105 0.27 -0.7
105,762 - MPMX20_00105 0.27 -0.3
105,762 - MPMX20_00105 0.27 -2.3
105,762 - MPMX20_00105 0.27 -0.6
105,762 - MPMX20_00105 0.27 -1.0
105,767 + MPMX20_00105 0.27 +0.1
105,772 + MPMX20_00105 0.28 -0.2
105,775 - MPMX20_00105 0.28 -2.1
105,778 + MPMX20_00105 0.28 -1.4
105,780 - MPMX20_00105 0.28 -2.3
105,902 + MPMX20_00105 0.40 -1.5
105,902 + MPMX20_00105 0.40 -3.4
105,902 + MPMX20_00105 0.40 -2.6
105,910 - MPMX20_00105 0.40 +0.3
105,972 - MPMX20_00105 0.46 -1.2
105,972 - MPMX20_00105 0.46 -1.8
105,972 - MPMX20_00105 0.46 -1.4
105,972 - MPMX20_00105 0.46 +1.2
105,976 - MPMX20_00105 0.46 -1.6
106,058 + MPMX20_00105 0.54 -0.4
106,066 - MPMX20_00105 0.54 -1.2
106,104 + MPMX20_00105 0.58 -0.9
106,151 + MPMX20_00105 0.62 -0.8
106,151 + MPMX20_00105 0.62 +2.0
106,151 + MPMX20_00105 0.62 -1.9
106,151 + MPMX20_00105 0.62 -1.7
106,151 + MPMX20_00105 0.62 -0.8
106,151 + MPMX20_00105 0.62 -2.6
106,159 - MPMX20_00105 0.63 -2.6
106,159 - MPMX20_00105 0.63 -2.6
106,218 + MPMX20_00105 0.68 +0.4
106,218 + MPMX20_00105 0.68 -2.6
106,219 + MPMX20_00105 0.68 +0.0
106,227 - MPMX20_00105 0.69 -1.3
106,227 - MPMX20_00105 0.69 +1.0
106,227 - MPMX20_00105 0.69 -0.8
106,241 + MPMX20_00105 0.70 +0.4
106,241 + MPMX20_00105 0.70 +2.0
106,241 + MPMX20_00105 0.70 -2.9
106,249 - MPMX20_00105 0.71 -1.4
106,249 - MPMX20_00105 0.71 -2.4
106,249 - MPMX20_00105 0.71 -1.2
106,249 - MPMX20_00105 0.71 -1.4
106,249 - MPMX20_00105 0.71 +0.4
106,270 + MPMX20_00105 0.73 -2.2
106,320 - MPMX20_00105 0.78 -0.3
106,322 + MPMX20_00105 0.78 -0.8
106,330 + MPMX20_00105 0.79 -2.3
106,360 + MPMX20_00105 0.81 -0.9
106,370 + MPMX20_00105 0.82 +0.4
106,375 + MPMX20_00105 0.83 -2.4
106,434 - MPMX20_00105 0.88 +0.0
106,438 + MPMX20_00105 0.88 -2.7
106,456 + -0.2
106,503 + -2.3
106,640 + -0.6
106,681 + MPMX20_00106 0.10 +0.4
106,688 + MPMX20_00106 0.11 +0.4
106,688 - MPMX20_00106 0.11 +0.0
106,696 - MPMX20_00106 0.11 -1.4
106,696 - MPMX20_00106 0.11 -1.0
106,696 - MPMX20_00106 0.11 -2.2
106,710 - MPMX20_00106 0.13 +2.0
106,731 - MPMX20_00106 0.14 -0.8
106,741 - MPMX20_00106 0.15 -0.6
106,781 + MPMX20_00106 0.19 -0.6
106,814 + MPMX20_00106 0.22 -0.3
106,839 + MPMX20_00106 0.24 -1.0
106,849 + MPMX20_00106 0.25 -1.0
106,858 + MPMX20_00106 0.26 -1.4
106,959 - MPMX20_00106 0.35 +1.4
106,971 + MPMX20_00106 0.36 -1.0
106,971 + MPMX20_00106 0.36 +2.0
106,979 - MPMX20_00106 0.36 +0.4
106,979 - MPMX20_00106 0.36 -0.3
106,979 - MPMX20_00106 0.36 -0.3
106,979 - MPMX20_00106 0.36 -0.3
107,019 - MPMX20_00106 0.40 -2.6
107,028 + MPMX20_00106 0.41 +1.0
107,067 + MPMX20_00106 0.44 -1.7
107,113 + MPMX20_00106 0.48 -0.6
107,113 + MPMX20_00106 0.48 -1.0
107,113 + MPMX20_00106 0.48 -2.0
107,125 + MPMX20_00106 0.49 +1.0
107,125 + MPMX20_00106 0.49 -0.6
107,125 + MPMX20_00106 0.49 +0.4
107,125 + MPMX20_00106 0.49 +2.0
107,125 + MPMX20_00106 0.49 -2.2
107,125 + MPMX20_00106 0.49 -0.8
107,125 + MPMX20_00106 0.49 -1.0
107,125 + MPMX20_00106 0.49 -0.8
107,125 + MPMX20_00106 0.49 -0.6
107,125 + MPMX20_00106 0.49 +2.0
107,133 - MPMX20_00106 0.50 +0.0
107,133 - MPMX20_00106 0.50 +2.0
107,133 - MPMX20_00106 0.50 -1.0
107,133 - MPMX20_00106 0.50 -1.0
107,133 - MPMX20_00106 0.50 -1.6
107,439 + MPMX20_00106 0.77 -0.6
107,447 - MPMX20_00106 0.78 -1.2
107,479 + MPMX20_00106 0.81 -1.6
107,579 + MPMX20_00106 0.90 +0.0
107,601 - -0.8
107,699 + -0.2
107,793 - +0.7
107,887 + MPMX20_00107 0.18 -1.2
108,046 - MPMX20_00107 0.33 +1.0
108,063 + MPMX20_00107 0.35 -0.2
108,075 + MPMX20_00107 0.36 -1.7
108,083 - MPMX20_00107 0.36 -0.3
108,083 - MPMX20_00107 0.36 -0.9
108,113 - MPMX20_00107 0.39 +2.0
108,140 - MPMX20_00107 0.42 -0.8
108,152 - MPMX20_00107 0.43 +0.8
108,188 + MPMX20_00107 0.46 -1.6
108,188 + MPMX20_00107 0.46 -0.2
108,232 - MPMX20_00107 0.50 -0.4
108,318 - MPMX20_00107 0.58 -0.8
108,403 + MPMX20_00107 0.66 -1.9
108,413 - MPMX20_00107 0.67 -2.1
108,440 - MPMX20_00107 0.70 -0.8
108,459 + MPMX20_00107 0.72 -1.2
108,473 + MPMX20_00107 0.73 +3.0
108,494 - MPMX20_00107 0.75 +0.0
108,494 - MPMX20_00107 0.75 -0.4
108,507 - MPMX20_00107 0.76 -3.0
108,525 + MPMX20_00107 0.78 -0.6
108,551 - MPMX20_00107 0.80 -0.6
108,555 + MPMX20_00107 0.81 -2.5
108,571 - MPMX20_00107 0.82 -1.4

Or see this region's nucleotide sequence