Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00105

Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00104 and MPMX20_00105 are separated by 14 nucleotidesMPMX20_00105 and MPMX20_00106 are separated by 2 nucleotides MPMX20_00104: MPMX20_00104 - hypothetical protein, at 104,464 to 105,453 _00104 MPMX20_00105: MPMX20_00105 - N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase, at 105,468 to 106,565 _00105 MPMX20_00106: MPMX20_00106 - Lipopolysaccharide core biosynthesis protein RfaG, at 106,568 to 107,695 _00106 Position (kb) 105 106 107Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 104.611 kb on - strand, within MPMX20_00104at 104.620 kb on + strand, within MPMX20_00104at 104.700 kb on + strand, within MPMX20_00104at 104.747 kb on + strand, within MPMX20_00104at 104.789 kb on + strand, within MPMX20_00104at 104.825 kb on + strand, within MPMX20_00104at 104.833 kb on - strand, within MPMX20_00104at 104.835 kb on - strand, within MPMX20_00104at 104.835 kb on - strand, within MPMX20_00104at 104.857 kb on + strand, within MPMX20_00104at 104.857 kb on + strand, within MPMX20_00104at 104.953 kb on + strand, within MPMX20_00104at 104.957 kb on - strand, within MPMX20_00104at 105.007 kb on + strand, within MPMX20_00104at 105.008 kb on + strand, within MPMX20_00104at 105.020 kb on + strand, within MPMX20_00104at 105.020 kb on + strand, within MPMX20_00104at 105.061 kb on - strand, within MPMX20_00104at 105.105 kb on + strand, within MPMX20_00104at 105.147 kb on - strand, within MPMX20_00104at 105.155 kb on + strand, within MPMX20_00104at 105.163 kb on - strand, within MPMX20_00104at 105.165 kb on + strand, within MPMX20_00104at 105.213 kb on + strand, within MPMX20_00104at 105.221 kb on - strand, within MPMX20_00104at 105.325 kb on + strand, within MPMX20_00104at 105.342 kb on + strand, within MPMX20_00104at 105.342 kb on + strand, within MPMX20_00104at 105.350 kb on - strand, within MPMX20_00104at 105.350 kb on - strand, within MPMX20_00104at 105.377 kb on + strandat 105.404 kb on + strandat 105.485 kb on + strandat 105.498 kb on - strandat 105.540 kb on + strandat 105.540 kb on + strandat 105.548 kb on - strandat 105.548 kb on - strandat 105.558 kb on + strandat 105.559 kb on + strandat 105.559 kb on + strandat 105.564 kb on - strandat 105.566 kb on - strandat 105.609 kb on - strand, within MPMX20_00105at 105.650 kb on + strand, within MPMX20_00105at 105.650 kb on + strand, within MPMX20_00105at 105.650 kb on + strand, within MPMX20_00105at 105.658 kb on - strand, within MPMX20_00105at 105.658 kb on - strand, within MPMX20_00105at 105.658 kb on - strand, within MPMX20_00105at 105.658 kb on - strand, within MPMX20_00105at 105.658 kb on - strand, within MPMX20_00105at 105.673 kb on + strand, within MPMX20_00105at 105.688 kb on + strand, within MPMX20_00105at 105.738 kb on - strand, within MPMX20_00105at 105.754 kb on + strand, within MPMX20_00105at 105.754 kb on + strand, within MPMX20_00105at 105.754 kb on + strand, within MPMX20_00105at 105.754 kb on + strand, within MPMX20_00105at 105.762 kb on - strand, within MPMX20_00105at 105.762 kb on - strand, within MPMX20_00105at 105.762 kb on - strand, within MPMX20_00105at 105.762 kb on - strand, within MPMX20_00105at 105.762 kb on - strand, within MPMX20_00105at 105.762 kb on - strand, within MPMX20_00105at 105.767 kb on + strand, within MPMX20_00105at 105.772 kb on + strand, within MPMX20_00105at 105.775 kb on - strand, within MPMX20_00105at 105.778 kb on + strand, within MPMX20_00105at 105.780 kb on - strand, within MPMX20_00105at 105.902 kb on + strand, within MPMX20_00105at 105.902 kb on + strand, within MPMX20_00105at 105.902 kb on + strand, within MPMX20_00105at 105.910 kb on - strand, within MPMX20_00105at 105.972 kb on - strand, within MPMX20_00105at 105.972 kb on - strand, within MPMX20_00105at 105.972 kb on - strand, within MPMX20_00105at 105.972 kb on - strand, within MPMX20_00105at 105.976 kb on - strand, within MPMX20_00105at 106.058 kb on + strand, within MPMX20_00105at 106.066 kb on - strand, within MPMX20_00105at 106.104 kb on + strand, within MPMX20_00105at 106.151 kb on + strand, within MPMX20_00105at 106.151 kb on + strand, within MPMX20_00105at 106.151 kb on + strand, within MPMX20_00105at 106.151 kb on + strand, within MPMX20_00105at 106.151 kb on + strand, within MPMX20_00105at 106.151 kb on + strand, within MPMX20_00105at 106.159 kb on - strand, within MPMX20_00105at 106.159 kb on - strand, within MPMX20_00105at 106.218 kb on + strand, within MPMX20_00105at 106.218 kb on + strand, within MPMX20_00105at 106.219 kb on + strand, within MPMX20_00105at 106.227 kb on - strand, within MPMX20_00105at 106.227 kb on - strand, within MPMX20_00105at 106.227 kb on - strand, within MPMX20_00105at 106.241 kb on + strand, within MPMX20_00105at 106.241 kb on + strand, within MPMX20_00105at 106.241 kb on + strand, within MPMX20_00105at 106.249 kb on - strand, within MPMX20_00105at 106.249 kb on - strand, within MPMX20_00105at 106.249 kb on - strand, within MPMX20_00105at 106.249 kb on - strand, within MPMX20_00105at 106.249 kb on - strand, within MPMX20_00105at 106.270 kb on + strand, within MPMX20_00105at 106.320 kb on - strand, within MPMX20_00105at 106.322 kb on + strand, within MPMX20_00105at 106.330 kb on + strand, within MPMX20_00105at 106.360 kb on + strand, within MPMX20_00105at 106.370 kb on + strand, within MPMX20_00105at 106.375 kb on + strand, within MPMX20_00105at 106.434 kb on - strand, within MPMX20_00105at 106.438 kb on + strand, within MPMX20_00105at 106.456 kb on + strandat 106.503 kb on + strandat 106.640 kb on + strandat 106.681 kb on + strand, within MPMX20_00106at 106.688 kb on + strand, within MPMX20_00106at 106.688 kb on - strand, within MPMX20_00106at 106.696 kb on - strand, within MPMX20_00106at 106.696 kb on - strand, within MPMX20_00106at 106.696 kb on - strand, within MPMX20_00106at 106.710 kb on - strand, within MPMX20_00106at 106.731 kb on - strand, within MPMX20_00106at 106.741 kb on - strand, within MPMX20_00106at 106.781 kb on + strand, within MPMX20_00106at 106.814 kb on + strand, within MPMX20_00106at 106.839 kb on + strand, within MPMX20_00106at 106.849 kb on + strand, within MPMX20_00106at 106.858 kb on + strand, within MPMX20_00106at 106.959 kb on - strand, within MPMX20_00106at 106.971 kb on + strand, within MPMX20_00106at 106.971 kb on + strand, within MPMX20_00106at 106.979 kb on - strand, within MPMX20_00106at 106.979 kb on - strand, within MPMX20_00106at 106.979 kb on - strand, within MPMX20_00106at 106.979 kb on - strand, within MPMX20_00106at 107.019 kb on - strand, within MPMX20_00106at 107.028 kb on + strand, within MPMX20_00106at 107.067 kb on + strand, within MPMX20_00106at 107.113 kb on + strand, within MPMX20_00106at 107.113 kb on + strand, within MPMX20_00106at 107.113 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.125 kb on + strand, within MPMX20_00106at 107.133 kb on - strand, within MPMX20_00106at 107.133 kb on - strand, within MPMX20_00106at 107.133 kb on - strand, within MPMX20_00106at 107.133 kb on - strand, within MPMX20_00106at 107.133 kb on - strand, within MPMX20_00106at 107.439 kb on + strand, within MPMX20_00106at 107.447 kb on - strand, within MPMX20_00106at 107.479 kb on + strand, within MPMX20_00106

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
remove
104,611 - MPMX20_00104 0.15 -0.6
104,620 + MPMX20_00104 0.16 -0.3
104,700 + MPMX20_00104 0.24 +0.8
104,747 + MPMX20_00104 0.29 +1.0
104,789 + MPMX20_00104 0.33 +0.1
104,825 + MPMX20_00104 0.36 +0.3
104,833 - MPMX20_00104 0.37 +1.1
104,835 - MPMX20_00104 0.37 -2.2
104,835 - MPMX20_00104 0.37 +0.8
104,857 + MPMX20_00104 0.40 -0.3
104,857 + MPMX20_00104 0.40 +3.0
104,953 + MPMX20_00104 0.49 -0.1
104,957 - MPMX20_00104 0.50 -0.8
105,007 + MPMX20_00104 0.55 +1.2
105,008 + MPMX20_00104 0.55 +0.3
105,020 + MPMX20_00104 0.56 +0.4
105,020 + MPMX20_00104 0.56 -0.4
105,061 - MPMX20_00104 0.60 +1.2
105,105 + MPMX20_00104 0.65 +0.6
105,147 - MPMX20_00104 0.69 -0.6
105,155 + MPMX20_00104 0.70 -0.3
105,163 - MPMX20_00104 0.71 -1.9
105,165 + MPMX20_00104 0.71 -0.2
105,213 + MPMX20_00104 0.76 -0.2
105,221 - MPMX20_00104 0.76 -1.4
105,325 + MPMX20_00104 0.87 +0.7
105,342 + MPMX20_00104 0.89 -0.3
105,342 + MPMX20_00104 0.89 +0.5
105,350 - MPMX20_00104 0.89 +0.0
105,350 - MPMX20_00104 0.89 -0.3
105,377 + -3.2
105,404 + -0.1
105,485 + +1.0
105,498 - -0.3
105,540 + -0.7
105,540 + -3.6
105,548 - -1.9
105,548 - -1.0
105,558 + -0.3
105,559 + -2.6
105,559 + -1.0
105,564 - -1.3
105,566 - -4.2
105,609 - MPMX20_00105 0.13 -0.9
105,650 + MPMX20_00105 0.17 -0.8
105,650 + MPMX20_00105 0.17 -0.6
105,650 + MPMX20_00105 0.17 -1.6
105,658 - MPMX20_00105 0.17 -2.4
105,658 - MPMX20_00105 0.17 -0.5
105,658 - MPMX20_00105 0.17 -0.0
105,658 - MPMX20_00105 0.17 -0.8
105,658 - MPMX20_00105 0.17 -2.2
105,673 + MPMX20_00105 0.19 +0.3
105,688 + MPMX20_00105 0.20 -1.1
105,738 - MPMX20_00105 0.25 -2.2
105,754 + MPMX20_00105 0.26 +0.0
105,754 + MPMX20_00105 0.26 +0.3
105,754 + MPMX20_00105 0.26 -1.0
105,754 + MPMX20_00105 0.26 +0.0
105,762 - MPMX20_00105 0.27 -0.7
105,762 - MPMX20_00105 0.27 -0.7
105,762 - MPMX20_00105 0.27 -0.3
105,762 - MPMX20_00105 0.27 -2.3
105,762 - MPMX20_00105 0.27 -0.6
105,762 - MPMX20_00105 0.27 -1.0
105,767 + MPMX20_00105 0.27 +0.1
105,772 + MPMX20_00105 0.28 -0.2
105,775 - MPMX20_00105 0.28 -2.1
105,778 + MPMX20_00105 0.28 -1.4
105,780 - MPMX20_00105 0.28 -2.3
105,902 + MPMX20_00105 0.40 -1.5
105,902 + MPMX20_00105 0.40 -3.4
105,902 + MPMX20_00105 0.40 -2.6
105,910 - MPMX20_00105 0.40 +0.3
105,972 - MPMX20_00105 0.46 -1.2
105,972 - MPMX20_00105 0.46 -1.8
105,972 - MPMX20_00105 0.46 -1.4
105,972 - MPMX20_00105 0.46 +1.2
105,976 - MPMX20_00105 0.46 -1.6
106,058 + MPMX20_00105 0.54 -0.4
106,066 - MPMX20_00105 0.54 -1.2
106,104 + MPMX20_00105 0.58 -0.9
106,151 + MPMX20_00105 0.62 -0.8
106,151 + MPMX20_00105 0.62 +2.0
106,151 + MPMX20_00105 0.62 -1.9
106,151 + MPMX20_00105 0.62 -1.7
106,151 + MPMX20_00105 0.62 -0.8
106,151 + MPMX20_00105 0.62 -2.6
106,159 - MPMX20_00105 0.63 -2.6
106,159 - MPMX20_00105 0.63 -2.6
106,218 + MPMX20_00105 0.68 +0.4
106,218 + MPMX20_00105 0.68 -2.6
106,219 + MPMX20_00105 0.68 +0.0
106,227 - MPMX20_00105 0.69 -1.3
106,227 - MPMX20_00105 0.69 +1.0
106,227 - MPMX20_00105 0.69 -0.8
106,241 + MPMX20_00105 0.70 +0.4
106,241 + MPMX20_00105 0.70 +2.0
106,241 + MPMX20_00105 0.70 -2.9
106,249 - MPMX20_00105 0.71 -1.4
106,249 - MPMX20_00105 0.71 -2.4
106,249 - MPMX20_00105 0.71 -1.2
106,249 - MPMX20_00105 0.71 -1.4
106,249 - MPMX20_00105 0.71 +0.4
106,270 + MPMX20_00105 0.73 -2.2
106,320 - MPMX20_00105 0.78 -0.3
106,322 + MPMX20_00105 0.78 -0.8
106,330 + MPMX20_00105 0.79 -2.3
106,360 + MPMX20_00105 0.81 -0.9
106,370 + MPMX20_00105 0.82 +0.4
106,375 + MPMX20_00105 0.83 -2.4
106,434 - MPMX20_00105 0.88 +0.0
106,438 + MPMX20_00105 0.88 -2.7
106,456 + -0.2
106,503 + -2.3
106,640 + -0.6
106,681 + MPMX20_00106 0.10 +0.4
106,688 + MPMX20_00106 0.11 +0.4
106,688 - MPMX20_00106 0.11 +0.0
106,696 - MPMX20_00106 0.11 -1.4
106,696 - MPMX20_00106 0.11 -1.0
106,696 - MPMX20_00106 0.11 -2.2
106,710 - MPMX20_00106 0.13 +2.0
106,731 - MPMX20_00106 0.14 -0.8
106,741 - MPMX20_00106 0.15 -0.6
106,781 + MPMX20_00106 0.19 -0.6
106,814 + MPMX20_00106 0.22 -0.3
106,839 + MPMX20_00106 0.24 -1.0
106,849 + MPMX20_00106 0.25 -1.0
106,858 + MPMX20_00106 0.26 -1.4
106,959 - MPMX20_00106 0.35 +1.4
106,971 + MPMX20_00106 0.36 -1.0
106,971 + MPMX20_00106 0.36 +2.0
106,979 - MPMX20_00106 0.36 +0.4
106,979 - MPMX20_00106 0.36 -0.3
106,979 - MPMX20_00106 0.36 -0.3
106,979 - MPMX20_00106 0.36 -0.3
107,019 - MPMX20_00106 0.40 -2.6
107,028 + MPMX20_00106 0.41 +1.0
107,067 + MPMX20_00106 0.44 -1.7
107,113 + MPMX20_00106 0.48 -0.6
107,113 + MPMX20_00106 0.48 -1.0
107,113 + MPMX20_00106 0.48 -2.0
107,125 + MPMX20_00106 0.49 +1.0
107,125 + MPMX20_00106 0.49 -0.6
107,125 + MPMX20_00106 0.49 +0.4
107,125 + MPMX20_00106 0.49 +2.0
107,125 + MPMX20_00106 0.49 -2.2
107,125 + MPMX20_00106 0.49 -0.8
107,125 + MPMX20_00106 0.49 -1.0
107,125 + MPMX20_00106 0.49 -0.8
107,125 + MPMX20_00106 0.49 -0.6
107,125 + MPMX20_00106 0.49 +2.0
107,133 - MPMX20_00106 0.50 +0.0
107,133 - MPMX20_00106 0.50 +2.0
107,133 - MPMX20_00106 0.50 -1.0
107,133 - MPMX20_00106 0.50 -1.0
107,133 - MPMX20_00106 0.50 -1.6
107,439 + MPMX20_00106 0.77 -0.6
107,447 - MPMX20_00106 0.78 -1.2
107,479 + MPMX20_00106 0.81 -1.6

Or see this region's nucleotide sequence