Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00084 and MPMX20_00085 are separated by 3 nucleotides MPMX20_00085 and MPMX20_00086 are separated by 4 nucleotides MPMX20_00086 and MPMX20_00087 are separated by 19 nucleotides MPMX20_00087 and MPMX20_00088 are separated by 54 nucleotides
MPMX20_00084: MPMX20_00084 - ATP-dependent DNA helicase RecG, at 85,957 to 88,038
_00084
MPMX20_00085: MPMX20_00085 - tRNA (guanosine(18)-2'-O)-methyltransferase, at 88,042 to 88,731
_00085
MPMX20_00086: MPMX20_00086 - Bifunctional (p)ppGpp synthase/hydrolase SpoT, at 88,736 to 90,850
_00086
MPMX20_00087: MPMX20_00087 - DNA-directed RNA polymerase subunit omega, at 90,870 to 91,145
_00087
MPMX20_00088: MPMX20_00088 - Guanylate kinase, at 91,200 to 91,823
_00088
Position (kb) 88
89
90
91 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 87.792 kb on - strand, within MPMX20_00084 at 87.794 kb on + strand, within MPMX20_00084 at 87.816 kb on + strand, within MPMX20_00084 at 87.829 kb on + strand, within MPMX20_00084 at 87.829 kb on + strand, within MPMX20_00084 at 87.829 kb on + strand, within MPMX20_00084 at 87.837 kb on - strand at 87.837 kb on - strand at 88.062 kb on - strand at 88.152 kb on - strand, within MPMX20_00085 at 88.256 kb on - strand, within MPMX20_00085 at 88.284 kb on + strand, within MPMX20_00085 at 88.390 kb on + strand, within MPMX20_00085 at 88.448 kb on - strand, within MPMX20_00085 at 88.599 kb on + strand, within MPMX20_00085 at 88.601 kb on + strand, within MPMX20_00085 at 88.607 kb on - strand, within MPMX20_00085 at 88.607 kb on - strand, within MPMX20_00085 at 88.607 kb on - strand, within MPMX20_00085 at 88.607 kb on - strand, within MPMX20_00085 at 88.607 kb on - strand, within MPMX20_00085 at 88.609 kb on - strand, within MPMX20_00085 at 88.636 kb on + strand, within MPMX20_00085 at 88.656 kb on + strand, within MPMX20_00085 at 88.656 kb on + strand, within MPMX20_00085 at 88.687 kb on - strand at 88.922 kb on + strand at 88.987 kb on + strand, within MPMX20_00086 at 89.012 kb on - strand, within MPMX20_00086 at 89.081 kb on - strand, within MPMX20_00086 at 89.113 kb on + strand, within MPMX20_00086 at 89.146 kb on - strand, within MPMX20_00086 at 89.146 kb on - strand, within MPMX20_00086 at 89.420 kb on - strand, within MPMX20_00086 at 90.887 kb on - strand at 90.887 kb on - strand at 90.977 kb on - strand, within MPMX20_00087 at 91.056 kb on + strand, within MPMX20_00087 at 91.059 kb on - strand, within MPMX20_00087 at 91.064 kb on - strand, within MPMX20_00087 at 91.064 kb on - strand, within MPMX20_00087 at 91.099 kb on - strand, within MPMX20_00087 at 91.099 kb on - strand, within MPMX20_00087 at 91.122 kb on + strand at 91.122 kb on + strand at 91.122 kb on + strand at 91.130 kb on - strand at 91.130 kb on - strand at 91.186 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 87,792 - MPMX20_00084 0.88 -1.2 87,794 + MPMX20_00084 0.88 +0.6 87,816 + MPMX20_00084 0.89 -0.7 87,829 + MPMX20_00084 0.90 -0.4 87,829 + MPMX20_00084 0.90 -0.2 87,829 + MPMX20_00084 0.90 -0.6 87,837 - -1.2 87,837 - +0.1 88,062 - -1.2 88,152 - MPMX20_00085 0.16 -1.0 88,256 - MPMX20_00085 0.31 -1.0 88,284 + MPMX20_00085 0.35 -1.1 88,390 + MPMX20_00085 0.50 -0.7 88,448 - MPMX20_00085 0.59 -0.6 88,599 + MPMX20_00085 0.81 +1.0 88,601 + MPMX20_00085 0.81 +0.0 88,607 - MPMX20_00085 0.82 +0.2 88,607 - MPMX20_00085 0.82 +0.4 88,607 - MPMX20_00085 0.82 -1.2 88,607 - MPMX20_00085 0.82 +0.2 88,607 - MPMX20_00085 0.82 -0.3 88,609 - MPMX20_00085 0.82 -0.8 88,636 + MPMX20_00085 0.86 +0.1 88,656 + MPMX20_00085 0.89 -0.9 88,656 + MPMX20_00085 0.89 +1.1 88,687 - +0.0 88,922 + -0.7 88,987 + MPMX20_00086 0.12 -2.6 89,012 - MPMX20_00086 0.13 -2.8 89,081 - MPMX20_00086 0.16 -2.9 89,113 + MPMX20_00086 0.18 -3.6 89,146 - MPMX20_00086 0.19 +0.3 89,146 - MPMX20_00086 0.19 -0.3 89,420 - MPMX20_00086 0.32 -0.9 90,887 - -0.1 90,887 - -1.6 90,977 - MPMX20_00087 0.39 +1.2 91,056 + MPMX20_00087 0.67 -0.3 91,059 - MPMX20_00087 0.68 -0.3 91,064 - MPMX20_00087 0.70 -1.3 91,064 - MPMX20_00087 0.70 -2.0 91,099 - MPMX20_00087 0.83 -0.9 91,099 - MPMX20_00087 0.83 -1.4 91,122 + +1.6 91,122 + -1.2 91,122 + -1.7 91,130 - +0.8 91,130 - -2.2 91,186 + +0.0
Or see this region's nucleotide sequence