Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS08455

Experiment: Anaerobic; FW104 COMM 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic; FW104 COMM 1 X
1,801,959	+		ABCV34_RS08445	0.36	-1.5
1,801,960	-		ABCV34_RS08445	0.36	-0.1
1,802,028	+		ABCV34_RS08445	0.49	-1.6
1,802,028	+		ABCV34_RS08445	0.49	-1.8
1,802,028	+		ABCV34_RS08445	0.49	-1.8
1,802,028	+		ABCV34_RS08445	0.49	-1.8
1,802,029	-		ABCV34_RS08445	0.50	-2.1
1,802,029	-		ABCV34_RS08445	0.50	-1.8
1,802,029	-		ABCV34_RS08445	0.50	-2.5
1,802,029	-		ABCV34_RS08445	0.50	-1.5
1,802,029	-		ABCV34_RS08445	0.50	-2.6
1,802,029	-		ABCV34_RS08445	0.50	-2.0
1,802,029	-		ABCV34_RS08445	0.50	-2.0
1,802,031	+		ABCV34_RS08445	0.50	-1.4
1,802,031	+		ABCV34_RS08445	0.50	-1.9
1,802,031	+		ABCV34_RS08445	0.50	-2.6
1,802,031	+		ABCV34_RS08445	0.50	-1.3
1,802,032	-		ABCV34_RS08445	0.50	-2.1
1,802,064	+		ABCV34_RS08445	0.57	-2.1
1,802,123	+		ABCV34_RS08445	0.68	-1.2
1,802,123	+		ABCV34_RS08445	0.68	-2.3
1,802,123	+		ABCV34_RS08445	0.68	-1.9
1,802,123	+		ABCV34_RS08445	0.68	-2.5
1,802,124	-		ABCV34_RS08445	0.68	-1.6
1,802,124	-		ABCV34_RS08445	0.68	-1.5
1,802,124	-		ABCV34_RS08445	0.68	-3.2
1,802,124	-		ABCV34_RS08445	0.68	-1.9
1,802,124	-		ABCV34_RS08445	0.68	-1.8
1,802,124	-		ABCV34_RS08445	0.68	-2.1
1,802,304	+				-2.0
1,802,304	+				+1.1
1,802,340	-				-2.1
1,802,780	+				-1.7
1,802,780	+				-2.0
1,802,780	+				-0.9
1,802,780	+				-2.3
1,802,780	+				-1.2
1,802,781	-				+0.2
1,802,781	-				-2.0
1,802,857	+				-1.8
1,802,857	+				-1.1
1,802,857	+				-1.1
1,802,858	-				-1.9
1,802,869	+				-1.5
1,802,869	+				-0.9
1,802,869	+				-2.3
1,802,870	-				-2.1
1,802,870	-				-1.2
1,802,890	+				-3.8
1,802,890	+				-1.6
1,802,890	+				-0.8
1,802,891	-				-0.1
1,802,891	-				-2.4
1,802,891	-				-3.1
1,802,891	-				-1.9
1,802,907	+				-1.2
1,802,907	+				-1.1
1,802,963	+				-1.3
1,802,963	+				-2.3
1,802,963	+				-2.1
1,802,963	+				-2.2
1,802,963	+				-1.5
1,802,963	+				-1.6
1,802,963	+				+0.2
1,802,964	-				-1.1
1,802,964	-				-1.9
1,802,964	-				-1.8
1,803,005	-				-2.2
1,803,047	+				-2.2
1,803,062	+				-1.7
1,803,063	-				-0.1
1,803,063	-				-0.3
1,803,095	+		ABCV34_RS08455	0.11	-1.6
1,803,096	-		ABCV34_RS08455	0.11	-0.9
1,803,125	+		ABCV34_RS08455	0.14	-1.3
1,803,347	+		ABCV34_RS08455	0.32	-2.4
1,803,347	+		ABCV34_RS08455	0.32	-0.1
1,803,347	+		ABCV34_RS08455	0.32	-1.4
1,803,347	+		ABCV34_RS08455	0.32	-1.3
1,803,347	+		ABCV34_RS08455	0.32	-1.1
1,803,347	+		ABCV34_RS08455	0.32	-1.9
1,803,347	+		ABCV34_RS08455	0.32	-0.5
1,803,348	-		ABCV34_RS08455	0.32	-1.3
1,803,348	-		ABCV34_RS08455	0.32	-2.4
1,803,348	-		ABCV34_RS08455	0.32	-1.3
1,803,348	-		ABCV34_RS08455	0.32	-1.9
1,803,348	-		ABCV34_RS08455	0.32	-1.6
1,803,413	+		ABCV34_RS08455	0.37	-1.6
1,803,413	+		ABCV34_RS08455	0.37	-1.1
1,803,413	+		ABCV34_RS08455	0.37	-1.1
1,803,413	+		ABCV34_RS08455	0.37	-1.9
1,803,414	-		ABCV34_RS08455	0.38	-1.6
1,803,414	-		ABCV34_RS08455	0.38	-1.5
1,803,414	-		ABCV34_RS08455	0.38	-2.3
1,803,414	-		ABCV34_RS08455	0.38	-1.9
1,803,414	-		ABCV34_RS08455	0.38	-1.5
1,803,414	-		ABCV34_RS08455	0.38	-1.8
1,803,422	+		ABCV34_RS08455	0.38	-1.8
1,803,422	+		ABCV34_RS08455	0.38	+1.4
1,803,422	+		ABCV34_RS08455	0.38	-1.3
1,803,422	+		ABCV34_RS08455	0.38	-0.5
1,803,422	+		ABCV34_RS08455	0.38	-1.6
1,803,422	+		ABCV34_RS08455	0.38	-1.1
1,803,422	+		ABCV34_RS08455	0.38	-1.1
1,803,422	+		ABCV34_RS08455	0.38	-1.1
1,803,422	+		ABCV34_RS08455	0.38	-3.1
1,803,422	+		ABCV34_RS08455	0.38	-1.1
1,803,422	+		ABCV34_RS08455	0.38	-1.1
1,803,422	+		ABCV34_RS08455	0.38	-1.4
1,803,422	+		ABCV34_RS08455	0.38	-1.6
1,803,423	-		ABCV34_RS08455	0.38	-2.2
1,803,423	-		ABCV34_RS08455	0.38	-2.4
1,803,423	-		ABCV34_RS08455	0.38	-1.8
1,803,423	-		ABCV34_RS08455	0.38	-1.3
1,803,423	-		ABCV34_RS08455	0.38	-1.4
1,803,423	-		ABCV34_RS08455	0.38	-0.1
1,803,423	-		ABCV34_RS08455	0.38	-3.5
1,803,423	-		ABCV34_RS08455	0.38	-1.1
1,803,423	-		ABCV34_RS08455	0.38	-1.9
1,803,423	-		ABCV34_RS08455	0.38	-1.5
1,803,423	-		ABCV34_RS08455	0.38	-2.1
1,803,423	-		ABCV34_RS08455	0.38	-2.0
1,803,423	-		ABCV34_RS08455	0.38	-2.9
1,803,424	+		ABCV34_RS08455	0.38	-2.5
1,803,424	+		ABCV34_RS08455	0.38	-2.3
1,803,424	+		ABCV34_RS08455	0.38	-2.0
1,803,626	+		ABCV34_RS08455	0.55	-1.8
1,803,671	+		ABCV34_RS08455	0.59	-1.0
1,803,671	+		ABCV34_RS08455	0.59	-1.1
1,803,671	+		ABCV34_RS08455	0.59	-0.3
1,803,671	+		ABCV34_RS08455	0.59	+0.0
1,803,671	+		ABCV34_RS08455	0.59	-1.1
1,803,672	-		ABCV34_RS08455	0.59	-1.6
1,803,672	-		ABCV34_RS08455	0.59	-2.2
1,803,696	-		ABCV34_RS08455	0.61	-3.6
1,803,761	+		ABCV34_RS08455	0.66	-1.1
1,803,761	+		ABCV34_RS08455	0.66	-2.2
1,803,762	-		ABCV34_RS08455	0.66	-1.6
1,803,770	+		ABCV34_RS08455	0.67	-1.8
1,803,771	-		ABCV34_RS08455	0.67	-0.6
1,803,824	+		ABCV34_RS08455	0.71	-2.3
1,803,825	-		ABCV34_RS08455	0.71	-3.2
1,803,825	-		ABCV34_RS08455	0.71	-1.1
1,803,825	-		ABCV34_RS08455	0.71	-1.3
1,803,833	+		ABCV34_RS08455	0.72	-2.6
1,803,833	+		ABCV34_RS08455	0.72	-2.1
1,803,833	+		ABCV34_RS08455	0.72	-1.4
1,803,833	+		ABCV34_RS08455	0.72	-1.6
1,803,833	+		ABCV34_RS08455	0.72	-1.2
1,803,833	+		ABCV34_RS08455	0.72	-1.6
1,803,833	+		ABCV34_RS08455	0.72	-1.5
1,803,833	+		ABCV34_RS08455	0.72	-1.7
1,803,833	+		ABCV34_RS08455	0.72	-1.9
1,803,833	+		ABCV34_RS08455	0.72	-1.3
1,803,833	+		ABCV34_RS08455	0.72	-2.9
1,803,833	+		ABCV34_RS08455	0.72	-1.7
1,803,833	+		ABCV34_RS08455	0.72	-1.3
1,803,833	+		ABCV34_RS08455	0.72	+0.9
1,803,834	-		ABCV34_RS08455	0.72	-1.1
1,803,834	-		ABCV34_RS08455	0.72	-1.2
1,803,834	-		ABCV34_RS08455	0.72	-1.8
1,803,834	-		ABCV34_RS08455	0.72	-1.6
1,803,834	-		ABCV34_RS08455	0.72	-1.9
1,803,834	-		ABCV34_RS08455	0.72	-0.6
1,803,834	-		ABCV34_RS08455	0.72	-1.8
1,803,834	-		ABCV34_RS08455	0.72	-1.5
1,803,834	-		ABCV34_RS08455	0.72	-0.4
1,803,834	-		ABCV34_RS08455	0.72	-1.7
1,803,834	-		ABCV34_RS08455	0.72	-1.9
1,803,834	-		ABCV34_RS08455	0.72	-2.1
1,803,866	+		ABCV34_RS08455	0.75	-0.6
1,803,866	+		ABCV34_RS08455	0.75	-2.5
1,803,866	+		ABCV34_RS08455	0.75	-0.4
1,803,867	-		ABCV34_RS08455	0.75	-2.2
1,803,867	-		ABCV34_RS08455	0.75	-1.9
1,803,867	-		ABCV34_RS08455	0.75	-2.1
1,803,867	-		ABCV34_RS08455	0.75	-1.4
1,804,098	-				-1.8
1,804,141	+				-1.8
1,804,141	+				-1.3
1,804,142	-				-2.1
1,804,287	-		ABCV34_RS08460	0.10	-1.1
1,804,543	+		ABCV34_RS08460	0.52	-2.1
1,804,543	+		ABCV34_RS08460	0.52	-1.6
1,804,543	+		ABCV34_RS08460	0.52	-0.5
1,804,543	+		ABCV34_RS08460	0.52	-2.2
1,804,543	+		ABCV34_RS08460	0.52	-2.6
1,804,543	+		ABCV34_RS08460	0.52	-0.1
1,804,544	-		ABCV34_RS08460	0.52	-1.5
1,804,544	-		ABCV34_RS08460	0.52	-1.4
1,804,544	-		ABCV34_RS08460	0.52	-1.6
1,804,544	-		ABCV34_RS08460	0.52	+0.6
1,804,544	-		ABCV34_RS08460	0.52	-1.6
1,804,544	-		ABCV34_RS08460	0.52	-2.6
1,804,906	+		ABCV34_RS08465	0.12	-1.6
1,804,906	+		ABCV34_RS08465	0.12	-0.1
1,804,906	+		ABCV34_RS08465	0.12	-2.2
1,804,907	-		ABCV34_RS08465	0.12	-0.1
1,804,907	-		ABCV34_RS08465	0.12	-2.1
1,804,914	+		ABCV34_RS08465	0.13	-0.8
1,804,914	+		ABCV34_RS08465	0.13	-1.3
1,804,914	+		ABCV34_RS08465	0.13	-0.4
1,804,914	+		ABCV34_RS08465	0.13	-1.1
1,804,914	+		ABCV34_RS08465	0.13	-2.3
1,804,914	+		ABCV34_RS08465	0.13	-1.2
1,804,915	-		ABCV34_RS08465	0.13	-0.9
1,804,915	-		ABCV34_RS08465	0.13	-2.3
1,804,915	-		ABCV34_RS08465	0.13	-2.4
1,804,915	-		ABCV34_RS08465	0.13	-1.5
1,804,915	-		ABCV34_RS08465	0.13	-0.9
1,804,915	-		ABCV34_RS08465	0.13	-1.6
1,805,074	+		ABCV34_RS08465	0.38	-1.7
1,805,074	+		ABCV34_RS08465	0.38	-2.6
1,805,074	+		ABCV34_RS08465	0.38	-2.0
1,805,074	+		ABCV34_RS08465	0.38	-1.6
1,805,074	+		ABCV34_RS08465	0.38	-1.2
1,805,074	+		ABCV34_RS08465	0.38	-0.8
1,805,075	-		ABCV34_RS08465	0.38	-1.7
1,805,075	-		ABCV34_RS08465	0.38	-2.1
1,805,075	-		ABCV34_RS08465	0.38	-1.7