Experiment: Anaerobic; FW104 COMM 1 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS07440 and ABCV34_RS07445 are separated by 146 nucleotides ABCV34_RS07445 and ABCV34_RS07450 are separated by 144 nucleotides ABCV34_RS07450 and ABCV34_RS07455 are separated by 88 nucleotides
ABCV34_RS07440: ABCV34_RS07440 - molecular chaperone DnaJ, at 1,598,625 to 1,599,755
_RS07440
ABCV34_RS07445: ABCV34_RS07445 - molecular chaperone DnaK, at 1,599,902 to 1,601,824
_RS07445
ABCV34_RS07450: ABCV34_RS07450 - nucleotide exchange factor GrpE, at 1,601,969 to 1,602,553
_RS07450
ABCV34_RS07455: ABCV34_RS07455 - ferrochelatase, at 1,602,642 to 1,603,688
_RS07455
Position (kb)
1599
1600
1601
1602 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1599.756 kb on - strand at 1600.015 kb on - strand at 1600.015 kb on - strand at 1600.015 kb on - strand at 1600.015 kb on - strand at 1600.015 kb on - strand at 1600.015 kb on - strand at 1600.015 kb on - strand at 1600.015 kb on - strand at 1600.015 kb on - strand at 1600.015 kb on - strand at 1600.015 kb on - strand at 1600.015 kb on - strand at 1600.015 kb on - strand at 1600.015 kb on - strand at 1600.015 kb on - strand at 1600.015 kb on - strand at 1600.015 kb on - strand at 1600.165 kb on - strand, within ABCV34_RS07445 at 1602.595 kb on + strand at 1602.596 kb on - strand at 1602.596 kb on - strand at 1602.596 kb on - strand at 1602.596 kb on - strand at 1602.643 kb on + strand at 1602.644 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic; FW104 COMM 1 X remove 1,599,756 - -2.4 1,600,015 - -0.9 1,600,015 - -1.2 1,600,015 - -1.3 1,600,015 - -0.4 1,600,015 - -1.1 1,600,015 - -0.3 1,600,015 - -0.5 1,600,015 - -1.4 1,600,015 - -1.4 1,600,015 - -2.2 1,600,015 - -1.3 1,600,015 - -0.6 1,600,015 - -1.7 1,600,015 - -1.5 1,600,015 - -1.2 1,600,015 - -1.6 1,600,015 - -1.6 1,600,165 - ABCV34_RS07445 0.14 -2.2 1,602,595 + -2.8 1,602,596 - -0.7 1,602,596 - -1.6 1,602,596 - -0.7 1,602,596 - -0.9 1,602,643 + -1.5 1,602,644 - -1.5
Or see this region's nucleotide sequence