Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS02110

Experiment: Anaerobic; FW104 COMM 1 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS02100 and ABCV34_RS02105 are separated by 79 nucleotidesABCV34_RS02105 and ABCV34_RS02110 are separated by 115 nucleotidesABCV34_RS02110 and ABCV34_RS02115 are separated by 259 nucleotidesABCV34_RS02115 and ABCV34_RS02120 overlap by 4 nucleotides ABCV34_RS02100: ABCV34_RS02100 - tRNA-Met, at 471,424 to 471,500 _RS02100 ABCV34_RS02105: ABCV34_RS02105 - SMC-Scp complex subunit ScpB, at 471,580 to 472,200 _RS02105 ABCV34_RS02110: ABCV34_RS02110 - 23S rRNA pseudouridine(2605) synthase RluB, at 472,316 to 473,953 _RS02110 ABCV34_RS02115: ABCV34_RS02115 - ribosome maturation factor RimP, at 474,213 to 474,683 _RS02115 ABCV34_RS02120: ABCV34_RS02120 - transcription termination factor NusA, at 474,680 to 476,164 _RS02120 Position (kb) 472 473 474Strain fitness (log2 ratio) -2 -1 0 1at 471.337 kb on + strandat 471.377 kb on - strandat 471.421 kb on - strandat 471.576 kb on + strandat 471.576 kb on + strandat 471.576 kb on + strandat 471.605 kb on + strandat 471.675 kb on + strand, within ABCV34_RS02105at 471.675 kb on + strand, within ABCV34_RS02105at 472.160 kb on + strandat 472.160 kb on + strandat 472.283 kb on + strandat 472.283 kb on + strandat 472.292 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic; FW104 COMM 1 X
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471,337 + +0.0
471,377 - -1.4
471,421 - -1.0
471,576 + -0.6
471,576 + -1.5
471,576 + -1.0
471,605 + -1.0
471,675 + ABCV34_RS02105 0.15 -1.8
471,675 + ABCV34_RS02105 0.15 -1.0
472,160 + -0.5
472,160 + -0.3
472,283 + -0.3
472,283 + -2.3
472,292 + -1.0

Or see this region's nucleotide sequence