Experiment: Outgrowth from agar plate co-culture with Achromobacter sp. TBS_048
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02762 and MPMX20_02763 are separated by 84 nucleotides MPMX20_02763 and MPMX20_02764 are separated by 131 nucleotides MPMX20_02764 and MPMX20_02765 overlap by 4 nucleotides MPMX20_02765 and MPMX20_02766 are separated by 39 nucleotides
MPMX20_02762: MPMX20_02762 - High-affinity zinc uptake system protein ZnuA, at 2,919,087 to 2,919,767
_02762
MPMX20_02763: MPMX20_02763 - hypothetical protein, at 2,919,852 to 2,919,977
_02763
MPMX20_02764: MPMX20_02764 - Zinc import ATP-binding protein ZnuC, at 2,920,109 to 2,920,864
_02764
MPMX20_02765: MPMX20_02765 - High-affinity zinc uptake system membrane protein ZnuB, at 2,920,861 to 2,921,646
_02765
MPMX20_02766: MPMX20_02766 - Holliday junction ATP-dependent DNA helicase RuvB, at 2,921,686 to 2,922,696
_02766
Position (kb)
2920
2921 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2919.182 kb on + strand, within MPMX20_02762 at 2919.182 kb on + strand, within MPMX20_02762 at 2919.182 kb on + strand, within MPMX20_02762 at 2919.190 kb on - strand, within MPMX20_02762 at 2919.190 kb on - strand, within MPMX20_02762 at 2919.190 kb on - strand, within MPMX20_02762 at 2919.190 kb on - strand, within MPMX20_02762 at 2919.190 kb on - strand, within MPMX20_02762 at 2919.190 kb on - strand, within MPMX20_02762 at 2919.190 kb on - strand, within MPMX20_02762 at 2919.238 kb on + strand, within MPMX20_02762 at 2919.238 kb on + strand, within MPMX20_02762 at 2919.246 kb on - strand, within MPMX20_02762 at 2919.312 kb on - strand, within MPMX20_02762 at 2919.324 kb on - strand, within MPMX20_02762 at 2919.367 kb on - strand, within MPMX20_02762 at 2919.367 kb on - strand, within MPMX20_02762 at 2919.373 kb on - strand, within MPMX20_02762 at 2919.442 kb on + strand, within MPMX20_02762 at 2919.460 kb on - strand, within MPMX20_02762 at 2919.465 kb on + strand, within MPMX20_02762 at 2919.473 kb on - strand, within MPMX20_02762 at 2919.571 kb on + strand, within MPMX20_02762 at 2919.657 kb on + strand, within MPMX20_02762 at 2919.947 kb on + strand, within MPMX20_02763 at 2919.987 kb on - strand at 2919.993 kb on + strand at 2920.154 kb on - strand at 2920.154 kb on - strand at 2920.325 kb on - strand, within MPMX20_02764 at 2920.428 kb on - strand, within MPMX20_02764 at 2920.519 kb on - strand, within MPMX20_02764 at 2920.519 kb on - strand, within MPMX20_02764 at 2920.519 kb on - strand, within MPMX20_02764 at 2920.521 kb on + strand, within MPMX20_02764 at 2920.529 kb on - strand, within MPMX20_02764 at 2920.540 kb on + strand, within MPMX20_02764 at 2920.563 kb on - strand, within MPMX20_02764 at 2920.565 kb on - strand, within MPMX20_02764 at 2920.565 kb on - strand, within MPMX20_02764 at 2920.565 kb on - strand, within MPMX20_02764 at 2920.621 kb on - strand, within MPMX20_02764 at 2920.623 kb on + strand, within MPMX20_02764 at 2920.631 kb on - strand, within MPMX20_02764 at 2920.663 kb on + strand, within MPMX20_02764 at 2920.687 kb on - strand, within MPMX20_02764 at 2920.707 kb on + strand, within MPMX20_02764 at 2920.724 kb on - strand, within MPMX20_02764 at 2920.778 kb on - strand, within MPMX20_02764 at 2920.895 kb on + strand at 2920.903 kb on - strand at 2920.903 kb on - strand at 2920.982 kb on + strand, within MPMX20_02765 at 2921.000 kb on + strand, within MPMX20_02765 at 2921.000 kb on + strand, within MPMX20_02765 at 2921.068 kb on + strand, within MPMX20_02765 at 2921.078 kb on - strand, within MPMX20_02765 at 2921.150 kb on + strand, within MPMX20_02765 at 2921.430 kb on + strand, within MPMX20_02765 at 2921.550 kb on - strand, within MPMX20_02765 at 2921.593 kb on - strand at 2921.595 kb on - strand at 2921.650 kb on + strand at 2921.663 kb on - strand at 2921.675 kb on + strand at 2921.778 kb on + strand at 2921.778 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Achromobacter sp. TBS_048 remove 2,919,182 + MPMX20_02762 0.14 -1.1 2,919,182 + MPMX20_02762 0.14 +0.4 2,919,182 + MPMX20_02762 0.14 -1.0 2,919,190 - MPMX20_02762 0.15 +0.5 2,919,190 - MPMX20_02762 0.15 -1.2 2,919,190 - MPMX20_02762 0.15 +0.0 2,919,190 - MPMX20_02762 0.15 -0.7 2,919,190 - MPMX20_02762 0.15 +0.3 2,919,190 - MPMX20_02762 0.15 -0.0 2,919,190 - MPMX20_02762 0.15 -0.3 2,919,238 + MPMX20_02762 0.22 +0.2 2,919,238 + MPMX20_02762 0.22 -1.7 2,919,246 - MPMX20_02762 0.23 -0.7 2,919,312 - MPMX20_02762 0.33 +1.8 2,919,324 - MPMX20_02762 0.35 +0.2 2,919,367 - MPMX20_02762 0.41 -1.9 2,919,367 - MPMX20_02762 0.41 +0.5 2,919,373 - MPMX20_02762 0.42 -0.2 2,919,442 + MPMX20_02762 0.52 -1.1 2,919,460 - MPMX20_02762 0.55 +0.3 2,919,465 + MPMX20_02762 0.56 +0.4 2,919,473 - MPMX20_02762 0.57 -0.5 2,919,571 + MPMX20_02762 0.71 -0.1 2,919,657 + MPMX20_02762 0.84 +0.7 2,919,947 + MPMX20_02763 0.75 -1.2 2,919,987 - +0.6 2,919,993 + +2.8 2,920,154 - -0.4 2,920,154 - -1.4 2,920,325 - MPMX20_02764 0.29 -0.8 2,920,428 - MPMX20_02764 0.42 +1.7 2,920,519 - MPMX20_02764 0.54 -1.2 2,920,519 - MPMX20_02764 0.54 -0.1 2,920,519 - MPMX20_02764 0.54 -0.4 2,920,521 + MPMX20_02764 0.54 -0.9 2,920,529 - MPMX20_02764 0.56 +2.6 2,920,540 + MPMX20_02764 0.57 -1.0 2,920,563 - MPMX20_02764 0.60 +0.1 2,920,565 - MPMX20_02764 0.60 -1.4 2,920,565 - MPMX20_02764 0.60 +0.4 2,920,565 - MPMX20_02764 0.60 +0.9 2,920,621 - MPMX20_02764 0.68 +0.9 2,920,623 + MPMX20_02764 0.68 +0.7 2,920,631 - MPMX20_02764 0.69 -0.0 2,920,663 + MPMX20_02764 0.73 -2.8 2,920,687 - MPMX20_02764 0.76 -0.9 2,920,707 + MPMX20_02764 0.79 -0.8 2,920,724 - MPMX20_02764 0.81 -2.2 2,920,778 - MPMX20_02764 0.88 -3.0 2,920,895 + -0.2 2,920,903 - -0.1 2,920,903 - +1.1 2,920,982 + MPMX20_02765 0.15 +0.3 2,921,000 + MPMX20_02765 0.18 -1.4 2,921,000 + MPMX20_02765 0.18 +0.1 2,921,068 + MPMX20_02765 0.26 +2.3 2,921,078 - MPMX20_02765 0.28 -0.3 2,921,150 + MPMX20_02765 0.37 -1.4 2,921,430 + MPMX20_02765 0.72 -0.1 2,921,550 - MPMX20_02765 0.88 -0.7 2,921,593 - +1.0 2,921,595 - +0.5 2,921,650 + -0.1 2,921,663 - +0.8 2,921,675 + +0.0 2,921,778 + -1.3 2,921,778 + -0.5
Or see this region's nucleotide sequence