Experiment: Anaerobic; FW104 COMM 1 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS09240 and ABCV34_RS09245 are separated by 90 nucleotides ABCV34_RS09245 and ABCV34_RS09250 are separated by 5 nucleotides ABCV34_RS09250 and ABCV34_RS09255 overlap by 34 nucleotides ABCV34_RS09255 and ABCV34_RS09260 overlap by 1 nucleotides
ABCV34_RS09240: ABCV34_RS09240 - ribose-phosphate pyrophosphokinase, at 1,979,220 to 1,980,170
_RS09240
ABCV34_RS09245: ABCV34_RS09245 - tRNA-Gln, at 1,980,261 to 1,980,337
_RS09245
ABCV34_RS09250: ABCV34_RS09250 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 1,980,343 to 1,981,350
_RS09250
ABCV34_RS09255: ABCV34_RS09255 - outer membrane lipoprotein LolB, at 1,981,317 to 1,981,961
_RS09255
ABCV34_RS09260: ABCV34_RS09260 - tetratricopeptide repeat protein, at 1,981,961 to 1,983,736
_RS09260
Position (kb)
1980
1981
1982 Strain fitness (log2 ratio)
-2
-1
0
1 at 1980.244 kb on - strand at 1980.244 kb on - strand at 1980.244 kb on - strand at 1980.244 kb on - strand at 1980.244 kb on - strand at 1980.244 kb on - strand at 1980.244 kb on - strand at 1980.244 kb on - strand at 1980.244 kb on - strand at 1980.244 kb on - strand at 1980.244 kb on - strand at 1980.244 kb on - strand at 1980.244 kb on - strand at 1980.257 kb on - strand at 1980.257 kb on - strand at 1982.181 kb on + strand, within ABCV34_RS09260 at 1982.181 kb on + strand, within ABCV34_RS09260 at 1982.182 kb on - strand, within ABCV34_RS09260
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic; FW104 COMM 1 X remove 1,980,244 - -1.0 1,980,244 - -1.1 1,980,244 - -0.9 1,980,244 - -1.0 1,980,244 - -1.4 1,980,244 - -1.4 1,980,244 - -0.6 1,980,244 - -1.3 1,980,244 - -1.7 1,980,244 - -1.4 1,980,244 - -1.0 1,980,244 - -2.1 1,980,244 - -1.3 1,980,257 - -1.1 1,980,257 - -1.9 1,982,181 + ABCV34_RS09260 0.12 -0.1 1,982,181 + ABCV34_RS09260 0.12 -2.4 1,982,182 - ABCV34_RS09260 0.12 -1.8
Or see this region's nucleotide sequence