Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS16170

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS16165 and LRK55_RS16170 are separated by 60 nucleotidesLRK55_RS16170 and LRK55_RS16175 are separated by 144 nucleotidesLRK55_RS16175 and LRK55_RS16180 are separated by 77 nucleotides LRK55_RS16165: LRK55_RS16165 - metallophosphoesterase family protein, at 3,526,647 to 3,527,408 _RS16165 LRK55_RS16170: LRK55_RS16170 - GFA family protein, at 3,527,469 to 3,527,933 _RS16170 LRK55_RS16175: LRK55_RS16175 - hypothetical protein, at 3,528,078 to 3,528,593 _RS16175 LRK55_RS16180: LRK55_RS16180 - DUF1579 domain-containing protein, at 3,528,671 to 3,529,258 _RS16180 Position (kb) 3527 3528Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3526.526 kb on - strandat 3526.716 kb on - strandat 3526.720 kb on + strandat 3526.720 kb on + strandat 3526.720 kb on + strandat 3526.721 kb on - strandat 3526.762 kb on + strand, within LRK55_RS16165at 3526.762 kb on + strand, within LRK55_RS16165at 3526.762 kb on + strand, within LRK55_RS16165at 3526.960 kb on + strand, within LRK55_RS16165at 3526.960 kb on + strand, within LRK55_RS16165at 3526.960 kb on + strand, within LRK55_RS16165at 3526.960 kb on + strand, within LRK55_RS16165at 3526.960 kb on + strand, within LRK55_RS16165at 3526.960 kb on + strand, within LRK55_RS16165at 3526.960 kb on + strand, within LRK55_RS16165at 3526.961 kb on - strand, within LRK55_RS16165at 3526.961 kb on - strand, within LRK55_RS16165at 3526.961 kb on - strand, within LRK55_RS16165at 3526.961 kb on - strand, within LRK55_RS16165at 3526.961 kb on - strand, within LRK55_RS16165at 3526.961 kb on - strand, within LRK55_RS16165at 3526.961 kb on - strand, within LRK55_RS16165at 3526.961 kb on - strand, within LRK55_RS16165at 3526.961 kb on - strand, within LRK55_RS16165at 3526.961 kb on - strand, within LRK55_RS16165at 3526.961 kb on - strand, within LRK55_RS16165at 3526.961 kb on - strand, within LRK55_RS16165at 3526.961 kb on - strand, within LRK55_RS16165at 3527.109 kb on + strand, within LRK55_RS16165at 3527.109 kb on + strand, within LRK55_RS16165at 3527.109 kb on + strand, within LRK55_RS16165at 3527.110 kb on - strand, within LRK55_RS16165at 3527.110 kb on - strand, within LRK55_RS16165at 3527.110 kb on - strand, within LRK55_RS16165at 3527.114 kb on + strand, within LRK55_RS16165at 3527.114 kb on + strand, within LRK55_RS16165at 3527.115 kb on - strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.254 kb on + strand, within LRK55_RS16165at 3527.255 kb on - strand, within LRK55_RS16165at 3527.255 kb on - strand, within LRK55_RS16165at 3527.255 kb on - strand, within LRK55_RS16165at 3527.255 kb on - strand, within LRK55_RS16165at 3527.255 kb on - strand, within LRK55_RS16165at 3527.255 kb on - strand, within LRK55_RS16165at 3527.255 kb on - strand, within LRK55_RS16165at 3527.255 kb on - strand, within LRK55_RS16165at 3527.255 kb on - strand, within LRK55_RS16165at 3527.255 kb on - strand, within LRK55_RS16165at 3527.255 kb on - strand, within LRK55_RS16165at 3527.255 kb on - strand, within LRK55_RS16165at 3527.255 kb on - strand, within LRK55_RS16165at 3527.255 kb on - strand, within LRK55_RS16165at 3527.255 kb on - strand, within LRK55_RS16165at 3527.255 kb on - strand, within LRK55_RS16165at 3527.255 kb on - strand, within LRK55_RS16165at 3527.255 kb on - strand, within LRK55_RS16165at 3527.256 kb on + strand, within LRK55_RS16165at 3527.256 kb on + strand, within LRK55_RS16165at 3527.256 kb on + strand, within LRK55_RS16165at 3527.256 kb on + strand, within LRK55_RS16165at 3527.257 kb on - strand, within LRK55_RS16165at 3527.257 kb on - strand, within LRK55_RS16165at 3527.257 kb on - strand, within LRK55_RS16165at 3527.257 kb on - strand, within LRK55_RS16165at 3527.257 kb on - strand, within LRK55_RS16165at 3527.396 kb on + strandat 3527.397 kb on - strandat 3527.397 kb on - strandat 3527.414 kb on - strandat 3527.495 kb on - strandat 3527.495 kb on - strandat 3527.495 kb on - strandat 3527.515 kb on + strandat 3527.516 kb on - strand, within LRK55_RS16170at 3527.516 kb on - strand, within LRK55_RS16170at 3527.516 kb on - strand, within LRK55_RS16170at 3527.542 kb on + strand, within LRK55_RS16170at 3527.542 kb on + strand, within LRK55_RS16170at 3527.542 kb on + strand, within LRK55_RS16170at 3527.542 kb on + strand, within LRK55_RS16170at 3527.542 kb on + strand, within LRK55_RS16170at 3527.542 kb on + strand, within LRK55_RS16170at 3527.542 kb on + strand, within LRK55_RS16170at 3527.542 kb on + strand, within LRK55_RS16170at 3527.543 kb on - strand, within LRK55_RS16170at 3527.543 kb on - strand, within LRK55_RS16170at 3527.543 kb on - strand, within LRK55_RS16170at 3527.543 kb on - strand, within LRK55_RS16170at 3527.707 kb on + strand, within LRK55_RS16170at 3527.707 kb on + strand, within LRK55_RS16170at 3527.707 kb on + strand, within LRK55_RS16170at 3527.708 kb on - strand, within LRK55_RS16170at 3527.708 kb on - strand, within LRK55_RS16170at 3527.708 kb on - strand, within LRK55_RS16170at 3527.708 kb on - strand, within LRK55_RS16170at 3527.760 kb on + strand, within LRK55_RS16170at 3527.760 kb on + strand, within LRK55_RS16170at 3527.760 kb on + strand, within LRK55_RS16170at 3527.760 kb on + strand, within LRK55_RS16170at 3527.761 kb on - strand, within LRK55_RS16170at 3527.761 kb on - strand, within LRK55_RS16170at 3527.926 kb on + strandat 3527.989 kb on + strandat 3527.989 kb on + strandat 3527.989 kb on + strandat 3527.989 kb on + strandat 3527.989 kb on + strandat 3527.989 kb on + strandat 3527.989 kb on + strandat 3527.990 kb on - strandat 3527.990 kb on - strandat 3527.990 kb on - strandat 3527.990 kb on - strandat 3527.990 kb on - strandat 3527.990 kb on - strandat 3527.990 kb on - strandat 3527.990 kb on - strandat 3527.990 kb on - strandat 3527.990 kb on - strandat 3527.990 kb on - strandat 3527.990 kb on - strandat 3527.990 kb on - strandat 3527.990 kb on - strandat 3527.993 kb on + strandat 3527.993 kb on + strandat 3527.993 kb on + strandat 3527.993 kb on + strandat 3527.994 kb on - strandat 3527.994 kb on - strandat 3527.994 kb on - strandat 3527.994 kb on - strandat 3528.044 kb on + strandat 3528.044 kb on + strandat 3528.044 kb on + strandat 3528.045 kb on - strandat 3528.045 kb on - strandat 3528.045 kb on - strandat 3528.125 kb on + strandat 3528.125 kb on + strandat 3528.125 kb on + strandat 3528.125 kb on + strandat 3528.125 kb on + strandat 3528.125 kb on + strandat 3528.126 kb on - strandat 3528.126 kb on - strandat 3528.126 kb on - strandat 3528.126 kb on - strandat 3528.126 kb on - strandat 3528.126 kb on - strandat 3528.126 kb on - strandat 3528.126 kb on - strandat 3528.126 kb on - strandat 3528.192 kb on + strand, within LRK55_RS16175at 3528.193 kb on - strand, within LRK55_RS16175at 3528.432 kb on + strand, within LRK55_RS16175at 3528.432 kb on + strand, within LRK55_RS16175at 3528.432 kb on + strand, within LRK55_RS16175at 3528.432 kb on + strand, within LRK55_RS16175at 3528.432 kb on + strand, within LRK55_RS16175at 3528.432 kb on + strand, within LRK55_RS16175at 3528.432 kb on + strand, within LRK55_RS16175at 3528.432 kb on + strand, within LRK55_RS16175at 3528.432 kb on + strand, within LRK55_RS16175at 3528.433 kb on - strand, within LRK55_RS16175at 3528.433 kb on - strand, within LRK55_RS16175at 3528.433 kb on - strand, within LRK55_RS16175at 3528.433 kb on - strand, within LRK55_RS16175at 3528.504 kb on + strand, within LRK55_RS16175at 3528.673 kb on - strandat 3528.825 kb on + strand, within LRK55_RS16180at 3528.825 kb on + strand, within LRK55_RS16180at 3528.825 kb on + strand, within LRK55_RS16180at 3528.825 kb on - strand, within LRK55_RS16180at 3528.826 kb on - strand, within LRK55_RS16180at 3528.826 kb on - strand, within LRK55_RS16180at 3528.826 kb on - strand, within LRK55_RS16180at 3528.930 kb on + strand, within LRK55_RS16180at 3528.930 kb on + strand, within LRK55_RS16180at 3528.930 kb on + strand, within LRK55_RS16180at 3528.930 kb on + strand, within LRK55_RS16180at 3528.930 kb on + strand, within LRK55_RS16180

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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3,526,526 - +1.0
3,526,716 - +2.6
3,526,720 + -0.7
3,526,720 + -0.1
3,526,720 + -0.9
3,526,721 - -0.5
3,526,762 + LRK55_RS16165 0.15 +0.6
3,526,762 + LRK55_RS16165 0.15 -0.5
3,526,762 + LRK55_RS16165 0.15 -0.4
3,526,960 + LRK55_RS16165 0.41 +0.1
3,526,960 + LRK55_RS16165 0.41 -0.4
3,526,960 + LRK55_RS16165 0.41 +0.8
3,526,960 + LRK55_RS16165 0.41 +0.3
3,526,960 + LRK55_RS16165 0.41 +0.0
3,526,960 + LRK55_RS16165 0.41 -0.0
3,526,960 + LRK55_RS16165 0.41 +0.2
3,526,961 - LRK55_RS16165 0.41 +1.6
3,526,961 - LRK55_RS16165 0.41 -2.7
3,526,961 - LRK55_RS16165 0.41 -1.4
3,526,961 - LRK55_RS16165 0.41 -0.5
3,526,961 - LRK55_RS16165 0.41 -0.1
3,526,961 - LRK55_RS16165 0.41 +0.1
3,526,961 - LRK55_RS16165 0.41 -1.3
3,526,961 - LRK55_RS16165 0.41 +0.2
3,526,961 - LRK55_RS16165 0.41 -0.9
3,526,961 - LRK55_RS16165 0.41 +3.2
3,526,961 - LRK55_RS16165 0.41 +0.4
3,526,961 - LRK55_RS16165 0.41 -1.5
3,526,961 - LRK55_RS16165 0.41 +0.1
3,527,109 + LRK55_RS16165 0.61 -0.4
3,527,109 + LRK55_RS16165 0.61 +0.8
3,527,109 + LRK55_RS16165 0.61 +0.5
3,527,110 - LRK55_RS16165 0.61 +0.0
3,527,110 - LRK55_RS16165 0.61 +1.0
3,527,110 - LRK55_RS16165 0.61 +0.5
3,527,114 + LRK55_RS16165 0.61 -1.0
3,527,114 + LRK55_RS16165 0.61 +0.0
3,527,115 - LRK55_RS16165 0.61 +0.3
3,527,254 + LRK55_RS16165 0.80 +0.2
3,527,254 + LRK55_RS16165 0.80 -1.7
3,527,254 + LRK55_RS16165 0.80 +0.3
3,527,254 + LRK55_RS16165 0.80 +0.6
3,527,254 + LRK55_RS16165 0.80 -2.0
3,527,254 + LRK55_RS16165 0.80 +0.3
3,527,254 + LRK55_RS16165 0.80 +0.8
3,527,254 + LRK55_RS16165 0.80 +0.0
3,527,254 + LRK55_RS16165 0.80 -1.4
3,527,254 + LRK55_RS16165 0.80 +0.2
3,527,254 + LRK55_RS16165 0.80 +0.9
3,527,254 + LRK55_RS16165 0.80 -1.6
3,527,254 + LRK55_RS16165 0.80 -0.0
3,527,254 + LRK55_RS16165 0.80 +1.1
3,527,254 + LRK55_RS16165 0.80 -2.8
3,527,254 + LRK55_RS16165 0.80 +1.8
3,527,254 + LRK55_RS16165 0.80 +2.0
3,527,254 + LRK55_RS16165 0.80 +1.9
3,527,254 + LRK55_RS16165 0.80 +0.0
3,527,254 + LRK55_RS16165 0.80 -0.7
3,527,254 + LRK55_RS16165 0.80 +1.2
3,527,255 - LRK55_RS16165 0.80 +0.6
3,527,255 - LRK55_RS16165 0.80 +0.8
3,527,255 - LRK55_RS16165 0.80 +0.1
3,527,255 - LRK55_RS16165 0.80 +0.4
3,527,255 - LRK55_RS16165 0.80 -0.2
3,527,255 - LRK55_RS16165 0.80 -0.4
3,527,255 - LRK55_RS16165 0.80 +0.4
3,527,255 - LRK55_RS16165 0.80 -0.7
3,527,255 - LRK55_RS16165 0.80 -0.6
3,527,255 - LRK55_RS16165 0.80 -0.8
3,527,255 - LRK55_RS16165 0.80 +1.5
3,527,255 - LRK55_RS16165 0.80 +2.5
3,527,255 - LRK55_RS16165 0.80 +1.1
3,527,255 - LRK55_RS16165 0.80 -0.5
3,527,255 - LRK55_RS16165 0.80 +0.6
3,527,255 - LRK55_RS16165 0.80 -0.0
3,527,255 - LRK55_RS16165 0.80 +1.4
3,527,255 - LRK55_RS16165 0.80 +1.1
3,527,256 + LRK55_RS16165 0.80 -1.1
3,527,256 + LRK55_RS16165 0.80 +0.9
3,527,256 + LRK55_RS16165 0.80 +0.9
3,527,256 + LRK55_RS16165 0.80 -0.8
3,527,257 - LRK55_RS16165 0.80 +0.1
3,527,257 - LRK55_RS16165 0.80 -0.8
3,527,257 - LRK55_RS16165 0.80 -0.1
3,527,257 - LRK55_RS16165 0.80 -1.2
3,527,257 - LRK55_RS16165 0.80 +1.1
3,527,396 + +0.6
3,527,397 - -0.0
3,527,397 - -0.5
3,527,414 - +0.9
3,527,495 - -0.4
3,527,495 - +0.7
3,527,495 - -1.4
3,527,515 + +0.5
3,527,516 - LRK55_RS16170 0.10 +0.5
3,527,516 - LRK55_RS16170 0.10 +0.1
3,527,516 - LRK55_RS16170 0.10 -1.4
3,527,542 + LRK55_RS16170 0.16 -0.1
3,527,542 + LRK55_RS16170 0.16 +0.9
3,527,542 + LRK55_RS16170 0.16 +0.1
3,527,542 + LRK55_RS16170 0.16 +0.6
3,527,542 + LRK55_RS16170 0.16 -0.6
3,527,542 + LRK55_RS16170 0.16 +0.5
3,527,542 + LRK55_RS16170 0.16 -0.7
3,527,542 + LRK55_RS16170 0.16 -0.2
3,527,543 - LRK55_RS16170 0.16 -0.5
3,527,543 - LRK55_RS16170 0.16 +1.8
3,527,543 - LRK55_RS16170 0.16 +0.5
3,527,543 - LRK55_RS16170 0.16 +1.3
3,527,707 + LRK55_RS16170 0.51 +1.5
3,527,707 + LRK55_RS16170 0.51 -0.7
3,527,707 + LRK55_RS16170 0.51 -0.4
3,527,708 - LRK55_RS16170 0.51 +1.6
3,527,708 - LRK55_RS16170 0.51 -1.0
3,527,708 - LRK55_RS16170 0.51 -0.4
3,527,708 - LRK55_RS16170 0.51 -2.2
3,527,760 + LRK55_RS16170 0.63 -1.6
3,527,760 + LRK55_RS16170 0.63 +0.0
3,527,760 + LRK55_RS16170 0.63 -0.2
3,527,760 + LRK55_RS16170 0.63 +1.2
3,527,761 - LRK55_RS16170 0.63 +0.7
3,527,761 - LRK55_RS16170 0.63 +1.2
3,527,926 + +1.4
3,527,989 + -1.4
3,527,989 + -1.4
3,527,989 + -2.4
3,527,989 + -0.5
3,527,989 + +1.5
3,527,989 + -0.2
3,527,989 + -0.1
3,527,990 - -0.6
3,527,990 - +0.0
3,527,990 - -0.4
3,527,990 - -1.7
3,527,990 - +1.4
3,527,990 - -1.8
3,527,990 - -2.0
3,527,990 - +0.1
3,527,990 - -0.2
3,527,990 - -0.8
3,527,990 - +0.0
3,527,990 - -0.4
3,527,990 - -1.7
3,527,990 - -0.7
3,527,993 + +1.9
3,527,993 + +0.6
3,527,993 + -0.4
3,527,993 + -0.5
3,527,994 - +0.3
3,527,994 - +0.7
3,527,994 - +0.8
3,527,994 - -0.2
3,528,044 + +1.0
3,528,044 + +0.0
3,528,044 + -0.7
3,528,045 - -2.1
3,528,045 - -1.1
3,528,045 - +1.3
3,528,125 + +0.3
3,528,125 + +0.6
3,528,125 + -1.4
3,528,125 + -0.1
3,528,125 + +1.6
3,528,125 + -2.6
3,528,126 - +1.0
3,528,126 - +1.0
3,528,126 - -0.4
3,528,126 - -0.3
3,528,126 - +0.2
3,528,126 - +0.6
3,528,126 - +0.4
3,528,126 - +0.6
3,528,126 - +0.7
3,528,192 + LRK55_RS16175 0.22 -0.1
3,528,193 - LRK55_RS16175 0.22 +0.6
3,528,432 + LRK55_RS16175 0.69 +0.5
3,528,432 + LRK55_RS16175 0.69 +0.0
3,528,432 + LRK55_RS16175 0.69 +1.2
3,528,432 + LRK55_RS16175 0.69 -0.4
3,528,432 + LRK55_RS16175 0.69 +0.2
3,528,432 + LRK55_RS16175 0.69 +0.6
3,528,432 + LRK55_RS16175 0.69 -1.7
3,528,432 + LRK55_RS16175 0.69 +0.4
3,528,432 + LRK55_RS16175 0.69 -0.7
3,528,433 - LRK55_RS16175 0.69 +3.4
3,528,433 - LRK55_RS16175 0.69 +2.2
3,528,433 - LRK55_RS16175 0.69 +1.1
3,528,433 - LRK55_RS16175 0.69 -1.0
3,528,504 + LRK55_RS16175 0.83 +0.5
3,528,673 - +0.5
3,528,825 + LRK55_RS16180 0.26 +1.4
3,528,825 + LRK55_RS16180 0.26 -0.4
3,528,825 + LRK55_RS16180 0.26 +1.5
3,528,825 - LRK55_RS16180 0.26 -0.3
3,528,826 - LRK55_RS16180 0.26 +1.4
3,528,826 - LRK55_RS16180 0.26 -0.4
3,528,826 - LRK55_RS16180 0.26 -0.4
3,528,930 + LRK55_RS16180 0.44 -0.4
3,528,930 + LRK55_RS16180 0.44 +0.8
3,528,930 + LRK55_RS16180 0.44 -0.8
3,528,930 + LRK55_RS16180 0.44 +0.4
3,528,930 + LRK55_RS16180 0.44 -0.1

Or see this region's nucleotide sequence