Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS13710

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,040,899	+		LRK55_RS13700	0.47	-2.2
3,040,899	+		LRK55_RS13700	0.47	+1.5
3,040,899	+		LRK55_RS13700	0.47	+1.0
3,040,899	+		LRK55_RS13700	0.47	-1.8
3,040,899	+		LRK55_RS13700	0.47	-1.7
3,040,899	+		LRK55_RS13700	0.47	-0.6
3,040,900	-		LRK55_RS13700	0.47	+0.2
3,040,900	-		LRK55_RS13700	0.47	+1.0
3,040,906	+		LRK55_RS13700	0.48	-0.4
3,040,907	-		LRK55_RS13700	0.49	-0.3
3,041,420	+		LRK55_RS13705	0.61	+0.9
3,041,420	+		LRK55_RS13705	0.61	+1.6
3,041,420	+		LRK55_RS13705	0.61	-0.5
3,041,420	+		LRK55_RS13705	0.61	+0.4
3,041,420	+		LRK55_RS13705	0.61	+1.3
3,041,420	+		LRK55_RS13705	0.61	+1.3
3,041,420	+		LRK55_RS13705	0.61	-0.6
3,041,420	+		LRK55_RS13705	0.61	-0.1
3,041,420	+		LRK55_RS13705	0.61	+0.3
3,041,420	+		LRK55_RS13705	0.61	+0.6
3,041,420	+		LRK55_RS13705	0.61	-0.3
3,041,421	-		LRK55_RS13705	0.61	-1.7
3,041,421	-		LRK55_RS13705	0.61	+0.3
3,041,421	-		LRK55_RS13705	0.61	+1.7
3,041,421	-		LRK55_RS13705	0.61	-0.7
3,041,421	-		LRK55_RS13705	0.61	-0.5
3,041,421	-		LRK55_RS13705	0.61	+0.2
3,041,457	+		LRK55_RS13705	0.71	-1.4
3,041,653	+				-0.4
3,041,653	+				+0.7
3,041,653	+				+0.0
3,041,654	-				-1.0
3,041,768	+				-0.3
3,041,768	+				+0.0
3,041,768	+				+1.0
3,041,768	+				-2.4
3,041,857	+				+0.9
3,041,857	+				+0.0
3,041,857	+				+0.1
3,041,857	+				+1.2
3,041,858	-				-0.7
3,041,858	-				-0.7
3,041,858	-				-0.2
3,041,858	-				-0.5
3,041,858	-				+0.1
3,041,858	-				-0.7
3,042,037	+				+1.2
3,042,037	+				-2.0
3,042,037	+				+0.5
3,042,037	+				-1.4
3,042,037	+				+0.3
3,042,037	+				-0.6
3,042,037	+				-0.5
3,042,037	+				-0.2
3,042,037	+				+0.2
3,042,038	-				-0.5
3,042,038	-				+0.8
3,042,038	-				-2.0
3,042,038	-				+0.6
3,042,038	-				+2.7
3,042,038	-				-0.4
3,042,145	+				-1.2
3,042,145	+				+0.3
3,042,145	+				+0.7
3,042,145	+				+1.1
3,042,146	-				+0.6
3,042,146	-				-1.3
3,042,146	-				-0.2
3,042,146	-				-0.1
3,042,146	-				+0.8
3,042,154	+				+0.4
3,042,154	+				+0.3
3,042,154	+				+0.7
3,042,155	-				-0.2
3,042,155	-				+0.9
3,042,160	+				+0.6
3,042,160	+				-0.1
3,042,160	+				+1.1
3,042,160	+				+0.8
3,042,160	+				+0.7
3,042,161	-				+0.2
3,042,181	+				+1.6
3,042,182	-				+0.6
3,042,182	-				+0.5
3,042,292	+		LRK55_RS13710	0.12	-2.0
3,042,292	+		LRK55_RS13710	0.12	+1.0
3,042,292	+		LRK55_RS13710	0.12	-1.6
3,042,293	-		LRK55_RS13710	0.12	-1.0
3,042,463	+		LRK55_RS13710	0.16	+0.2
3,042,463	+		LRK55_RS13710	0.16	-1.5
3,042,464	-		LRK55_RS13710	0.16	+0.6
3,042,500	-		LRK55_RS13710	0.17	+0.1
3,042,500	-		LRK55_RS13710	0.17	+1.2
3,042,508	+		LRK55_RS13710	0.17	+0.4
3,042,508	+		LRK55_RS13710	0.17	-0.2
3,042,509	-		LRK55_RS13710	0.18	+1.0
3,042,580	+		LRK55_RS13710	0.19	+0.4
3,042,580	+		LRK55_RS13710	0.19	+0.6
3,042,581	-		LRK55_RS13710	0.19	+0.2
3,042,581	-		LRK55_RS13710	0.19	+0.1
3,042,581	-		LRK55_RS13710	0.19	+0.2
3,042,581	-		LRK55_RS13710	0.19	+0.1
3,042,592	+		LRK55_RS13710	0.20	-1.8
3,042,592	+		LRK55_RS13710	0.20	+0.1
3,042,593	-		LRK55_RS13710	0.20	-0.2
3,042,700	+		LRK55_RS13710	0.23	+0.4
3,042,701	-		LRK55_RS13710	0.23	+1.3
3,042,701	-		LRK55_RS13710	0.23	+2.7
3,042,701	-		LRK55_RS13710	0.23	+0.6
3,042,701	-		LRK55_RS13710	0.23	+0.4
3,042,823	+		LRK55_RS13710	0.26	+0.2
3,042,824	-		LRK55_RS13710	0.26	-0.5
3,042,836	-		LRK55_RS13710	0.26	+0.6
3,042,836	-		LRK55_RS13710	0.26	+0.6
3,042,847	+		LRK55_RS13710	0.26	+1.5
3,042,847	+		LRK55_RS13710	0.26	-0.1
3,042,848	-		LRK55_RS13710	0.27	+0.2
3,043,148	-		LRK55_RS13710	0.35	+0.1
3,043,270	+		LRK55_RS13710	0.38	-0.2
3,043,270	+		LRK55_RS13710	0.38	+0.6
3,043,271	-		LRK55_RS13710	0.38	+0.9
3,043,291	+		LRK55_RS13710	0.38	+0.1
3,043,292	-		LRK55_RS13710	0.38	-1.6
3,043,510	+		LRK55_RS13710	0.44	+0.2
3,043,510	+		LRK55_RS13710	0.44	+2.2
3,043,511	-		LRK55_RS13710	0.44	+0.4
3,043,511	-		LRK55_RS13710	0.44	+1.3
3,043,579	+		LRK55_RS13710	0.46	-1.1
3,043,579	+		LRK55_RS13710	0.46	-0.2
3,043,579	+		LRK55_RS13710	0.46	+0.0
3,043,580	-		LRK55_RS13710	0.46	+0.2
3,043,580	-		LRK55_RS13710	0.46	-1.2
3,043,580	-		LRK55_RS13710	0.46	+0.3
3,043,580	-		LRK55_RS13710	0.46	+0.8
3,043,684	+		LRK55_RS13710	0.49	-1.2
3,043,685	-		LRK55_RS13710	0.49	+0.8
3,043,685	-		LRK55_RS13710	0.49	+0.0
3,043,685	-		LRK55_RS13710	0.49	+0.5
3,043,685	-		LRK55_RS13710	0.49	+1.5
3,043,894	+		LRK55_RS13710	0.54	+0.5
3,043,895	-		LRK55_RS13710	0.54	-0.4
3,044,026	+		LRK55_RS13710	0.58	+0.2
3,044,026	+		LRK55_RS13710	0.58	-0.2
3,044,026	+		LRK55_RS13710	0.58	-2.4
3,044,026	+		LRK55_RS13710	0.58	+0.1
3,044,026	+		LRK55_RS13710	0.58	+0.9
3,044,026	+		LRK55_RS13710	0.58	-0.1
3,044,027	-		LRK55_RS13710	0.58	+0.3
3,044,027	-		LRK55_RS13710	0.58	-0.5
3,044,027	-		LRK55_RS13710	0.58	+0.3
3,044,027	-		LRK55_RS13710	0.58	-2.6
3,044,027	-		LRK55_RS13710	0.58	+0.3
3,044,027	-		LRK55_RS13710	0.58	+0.0
3,044,027	-		LRK55_RS13710	0.58	-1.7
3,044,191	+		LRK55_RS13710	0.62	+0.9
3,044,192	-		LRK55_RS13710	0.62	-3.0
3,044,192	-		LRK55_RS13710	0.62	-0.5
3,044,192	-		LRK55_RS13710	0.62	-2.1
3,044,224	+		LRK55_RS13710	0.63	-1.1
3,044,524	+		LRK55_RS13710	0.71	+0.3
3,044,525	-		LRK55_RS13710	0.71	+1.2
3,044,536	+		LRK55_RS13710	0.71	-2.3
3,044,536	+		LRK55_RS13710	0.71	-1.5
3,044,536	+		LRK55_RS13710	0.71	+1.8
3,044,536	+		LRK55_RS13710	0.71	-0.1
3,044,536	+		LRK55_RS13710	0.71	-0.4
3,044,537	-		LRK55_RS13710	0.71	+1.0
3,044,537	-		LRK55_RS13710	0.71	+1.0
3,044,537	-		LRK55_RS13710	0.71	+0.2
3,044,607	+		LRK55_RS13710	0.73	+0.7
3,044,918	-		LRK55_RS13710	0.82	+0.3
3,044,918	-		LRK55_RS13710	0.82	-0.2
3,044,929	+		LRK55_RS13710	0.82	+1.7
3,044,929	+		LRK55_RS13710	0.82	-0.3
3,044,929	+		LRK55_RS13710	0.82	-0.8
3,044,930	-		LRK55_RS13710	0.82	-0.1
3,044,930	-		LRK55_RS13710	0.82	-0.1
3,044,986	+		LRK55_RS13710	0.83	+0.4
3,044,987	-		LRK55_RS13710	0.83	-1.4
3,044,987	-		LRK55_RS13710	0.83	+0.4
3,045,034	+		LRK55_RS13710	0.85	-1.3
3,045,035	-		LRK55_RS13710	0.85	-0.1
3,045,154	+		LRK55_RS13710	0.88	-1.9
3,045,154	+		LRK55_RS13710	0.88	-0.8
3,045,154	+		LRK55_RS13710	0.88	+0.2
3,045,154	+		LRK55_RS13710	0.88	-1.9
3,045,155	-		LRK55_RS13710	0.88	-0.8
3,045,155	-		LRK55_RS13710	0.88	+1.3
3,045,155	-		LRK55_RS13710	0.88	+0.1
3,045,155	-		LRK55_RS13710	0.88	+1.0
3,045,155	-		LRK55_RS13710	0.88	-0.3
3,045,155	-		LRK55_RS13710	0.88	+0.2
3,045,337	+				+0.8
3,045,337	+				-0.8
3,045,337	+				-1.0
3,045,338	-				+0.2
3,045,338	-				-0.1
3,045,338	-				-0.9
3,045,338	-				+1.4
3,045,338	-				+0.9
3,045,338	-				+1.1
3,045,338	-				+0.7
3,045,454	+				+0.3
3,045,481	+				+1.0
3,045,481	+				-0.2
3,045,482	-				+0.4
3,045,482	-				+0.1
3,045,484	+				-0.8
3,045,484	+				+0.4
3,045,485	-				-0.2
3,045,720	+				-1.0
3,045,721	-				-0.9
3,045,907	-		LRK55_RS13715	0.19	-1.1
3,045,909	+		LRK55_RS13715	0.19	+0.5
3,045,909	+		LRK55_RS13715	0.19	-0.3
3,045,909	+		LRK55_RS13715	0.19	-0.4
3,045,910	-		LRK55_RS13715	0.19	+0.4
3,045,910	-		LRK55_RS13715	0.19	+1.0
3,045,910	-		LRK55_RS13715	0.19	-0.2
3,045,910	-		LRK55_RS13715	0.19	+1.5
3,045,910	-		LRK55_RS13715	0.19	-0.5
3,046,110	+		LRK55_RS13715	0.32	-0.7
3,046,110	+		LRK55_RS13715	0.32	+0.1
3,046,110	+		LRK55_RS13715	0.32	+1.1
3,046,140	+		LRK55_RS13715	0.34	-1.9
3,046,140	+		LRK55_RS13715	0.34	+0.6
3,046,140	+		LRK55_RS13715	0.34	+0.2
3,046,141	-		LRK55_RS13715	0.34	+1.0
3,046,209	+		LRK55_RS13715	0.39	+0.1
3,046,209	+		LRK55_RS13715	0.39	-0.4
3,046,209	+		LRK55_RS13715	0.39	-1.2
3,046,210	-		LRK55_RS13715	0.39	+0.9
3,046,290	+		LRK55_RS13715	0.44	-0.2
3,046,291	-		LRK55_RS13715	0.44	+1.0
3,046,291	-		LRK55_RS13715	0.44	+1.9
3,046,302	+		LRK55_RS13715	0.45	+0.2
3,046,303	-		LRK55_RS13715	0.45	+1.1
3,046,305	+		LRK55_RS13715	0.45	+1.3
3,046,305	+		LRK55_RS13715	0.45	-0.7
3,046,306	-		LRK55_RS13715	0.45	-0.4
3,046,428	+		LRK55_RS13715	0.53	+1.1
3,046,482	+		LRK55_RS13715	0.57	-0.2
3,046,482	+		LRK55_RS13715	0.57	-0.4
3,046,483	-		LRK55_RS13715	0.57	+0.4
3,046,483	-		LRK55_RS13715	0.57	+0.4
3,046,596	+		LRK55_RS13715	0.64	-0.5
3,046,596	+		LRK55_RS13715	0.64	+0.4
3,046,596	+		LRK55_RS13715	0.64	-2.4
3,046,596	+		LRK55_RS13715	0.64	+0.4
3,046,596	+		LRK55_RS13715	0.64	-0.2
3,046,597	-		LRK55_RS13715	0.64	-0.2
3,046,597	-		LRK55_RS13715	0.64	-3.2