Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS08075

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
1,767,916	-				-1.6
1,767,945	+				-2.2
1,767,946	-				+0.6
1,767,951	-				+1.3
1,768,121	+		LRK55_RS08070	0.30	-0.3
1,768,121	+		LRK55_RS08070	0.30	+0.0
1,768,121	+		LRK55_RS08070	0.30	+1.1
1,768,121	+		LRK55_RS08070	0.30	+0.3
1,768,121	+		LRK55_RS08070	0.30	-0.1
1,768,121	+		LRK55_RS08070	0.30	-0.6
1,768,121	+		LRK55_RS08070	0.30	+0.1
1,768,122	-		LRK55_RS08070	0.30	+0.4
1,768,122	-		LRK55_RS08070	0.30	+0.6
1,768,122	-		LRK55_RS08070	0.30	+0.0
1,768,122	-		LRK55_RS08070	0.30	+0.2
1,768,122	-		LRK55_RS08070	0.30	-0.6
1,768,122	-		LRK55_RS08070	0.30	+0.6
1,768,136	+		LRK55_RS08070	0.33	-0.1
1,768,136	+		LRK55_RS08070	0.33	-0.5
1,768,137	-		LRK55_RS08070	0.33	+1.1
1,768,137	-		LRK55_RS08070	0.33	-0.6
1,768,137	-		LRK55_RS08070	0.33	+1.1
1,768,137	-		LRK55_RS08070	0.33	+0.4
1,768,137	-		LRK55_RS08070	0.33	-0.6
1,768,298	+		LRK55_RS08070	0.67	-1.2
1,768,462	+				-0.1
1,768,462	+				+0.3
1,768,462	+				+0.7
1,768,496	+				-0.2
1,768,555	+				-2.3
1,768,555	+				-1.5
1,768,556	-				-0.4
1,768,556	-				+0.3
1,768,639	+				-0.6
1,768,639	+				-0.0
1,768,640	-				+0.5
1,768,640	-				-1.4
1,768,640	-				-0.7
1,768,640	-				-1.9
1,768,651	+				-1.2
1,768,651	+				-1.3
1,768,651	+				-1.5
1,768,651	+				-1.6
1,768,651	+				-2.5
1,768,651	+				-0.2
1,768,651	+				-0.7
1,768,652	-				-0.2
1,768,652	-				-0.0
1,768,652	-				+0.4
1,768,687	+		LRK55_RS08075	0.10	+0.2
1,768,687	+		LRK55_RS08075	0.10	-0.3
1,768,687	+		LRK55_RS08075	0.10	+0.3
1,768,687	+		LRK55_RS08075	0.10	-0.3
1,768,687	+		LRK55_RS08075	0.10	-0.1
1,768,688	-		LRK55_RS08075	0.11	-0.4
1,768,688	-		LRK55_RS08075	0.11	+0.2
1,768,688	-		LRK55_RS08075	0.11	-0.2
1,768,969	+		LRK55_RS08075	0.42	-2.3
1,768,969	+		LRK55_RS08075	0.42	-0.1
1,768,970	-		LRK55_RS08075	0.42	-0.0
1,768,970	-		LRK55_RS08075	0.42	+0.2
1,768,970	-		LRK55_RS08075	0.42	-1.6
1,768,970	-		LRK55_RS08075	0.42	-1.3
1,768,970	-		LRK55_RS08075	0.42	-1.3
1,768,970	-		LRK55_RS08075	0.42	-0.2
1,769,034	-		LRK55_RS08075	0.50	+0.1
1,769,044	+		LRK55_RS08075	0.51	-0.4
1,769,044	+		LRK55_RS08075	0.51	-0.5
1,769,045	-		LRK55_RS08075	0.51	+0.3
1,769,045	-		LRK55_RS08075	0.51	-2.8
1,769,045	-		LRK55_RS08075	0.51	+0.1
1,769,045	-		LRK55_RS08075	0.51	-1.4
1,769,045	-		LRK55_RS08075	0.51	+1.5
1,769,045	-		LRK55_RS08075	0.51	+0.4
1,769,045	-		LRK55_RS08075	0.51	+0.2
1,769,056	+		LRK55_RS08075	0.52	+0.0
1,769,057	-		LRK55_RS08075	0.52	-0.1
1,769,120	+		LRK55_RS08075	0.59	+0.5
1,769,120	+		LRK55_RS08075	0.59	-0.0
1,769,120	+		LRK55_RS08075	0.59	-0.2
1,769,121	-		LRK55_RS08075	0.59	-0.7
1,769,121	-		LRK55_RS08075	0.59	+0.4
1,769,121	-		LRK55_RS08075	0.59	-0.0
1,769,121	-		LRK55_RS08075	0.59	-1.1
1,769,121	-		LRK55_RS08075	0.59	-1.6
1,769,121	-		LRK55_RS08075	0.59	-3.0
1,769,121	-		LRK55_RS08075	0.59	-0.3
1,769,121	-		LRK55_RS08075	0.59	-0.2
1,769,122	+		LRK55_RS08075	0.59	-0.1
1,769,122	+		LRK55_RS08075	0.59	-1.8
1,769,122	+		LRK55_RS08075	0.59	-0.8
1,769,122	+		LRK55_RS08075	0.59	-0.5
1,769,122	+		LRK55_RS08075	0.59	-0.5
1,769,122	+		LRK55_RS08075	0.59	-1.2
1,769,123	-		LRK55_RS08075	0.60	+0.1
1,769,123	-		LRK55_RS08075	0.60	-0.2
1,769,123	-		LRK55_RS08075	0.60	-0.5
1,769,123	-		LRK55_RS08075	0.60	-0.9
1,769,123	-		LRK55_RS08075	0.60	-0.9
1,769,123	-		LRK55_RS08075	0.60	+0.6
1,769,128	+		LRK55_RS08075	0.60	-1.6
1,769,128	+		LRK55_RS08075	0.60	-1.1
1,769,128	+		LRK55_RS08075	0.60	-1.0
1,769,128	+		LRK55_RS08075	0.60	-0.3
1,769,129	-		LRK55_RS08075	0.60	-1.1
1,769,129	-		LRK55_RS08075	0.60	-0.3
1,769,129	-		LRK55_RS08075	0.60	-0.6
1,769,129	-		LRK55_RS08075	0.60	-1.4
1,769,129	-		LRK55_RS08075	0.60	-1.1
1,769,129	-		LRK55_RS08075	0.60	-2.6
1,769,129	-		LRK55_RS08075	0.60	-1.1
1,769,129	-		LRK55_RS08075	0.60	-0.7
1,769,176	+		LRK55_RS08075	0.66	-0.9
1,769,176	+		LRK55_RS08075	0.66	-0.6
1,769,176	+		LRK55_RS08075	0.66	-1.4
1,769,177	-		LRK55_RS08075	0.66	-0.0
1,769,177	-		LRK55_RS08075	0.66	-0.4
1,769,177	-		LRK55_RS08075	0.66	-1.2
1,769,177	-		LRK55_RS08075	0.66	-1.7
1,769,215	+		LRK55_RS08075	0.70	+0.1
1,769,215	+		LRK55_RS08075	0.70	-1.6
1,769,215	+		LRK55_RS08075	0.70	-1.2
1,769,215	+		LRK55_RS08075	0.70	-0.7
1,769,215	+		LRK55_RS08075	0.70	-0.7
1,769,215	+		LRK55_RS08075	0.70	-1.4
1,769,216	-		LRK55_RS08075	0.70	-1.9
1,769,216	-		LRK55_RS08075	0.70	-1.1
1,769,216	-		LRK55_RS08075	0.70	-0.0
1,769,216	-		LRK55_RS08075	0.70	-0.3
1,769,216	-		LRK55_RS08075	0.70	-1.0
1,769,216	-		LRK55_RS08075	0.70	-0.7
1,769,296	+		LRK55_RS08075	0.79	-2.6
1,769,296	+		LRK55_RS08075	0.79	-0.5
1,769,296	+		LRK55_RS08075	0.79	-0.5
1,769,297	-		LRK55_RS08075	0.79	-0.9
1,769,297	-		LRK55_RS08075	0.79	+1.2
1,769,297	-		LRK55_RS08075	0.79	-0.6
1,769,297	-		LRK55_RS08075	0.79	-3.8
1,769,297	-		LRK55_RS08075	0.79	-0.6
1,769,297	-		LRK55_RS08075	0.79	-0.6
1,769,297	-		LRK55_RS08075	0.79	-0.9
1,769,308	+		LRK55_RS08075	0.80	-1.5
1,769,308	+		LRK55_RS08075	0.80	+0.3
1,769,308	+		LRK55_RS08075	0.80	-1.2
1,769,308	+		LRK55_RS08075	0.80	-0.8
1,769,309	-		LRK55_RS08075	0.81	-3.1
1,769,309	-		LRK55_RS08075	0.81	-0.6
1,769,309	-		LRK55_RS08075	0.81	-0.4
1,769,309	-		LRK55_RS08075	0.81	-0.4
1,769,309	-		LRK55_RS08075	0.81	-0.1
1,769,309	-		LRK55_RS08075	0.81	-0.8
1,769,309	-		LRK55_RS08075	0.81	+1.2
1,769,309	-		LRK55_RS08075	0.81	-1.1
1,769,309	-		LRK55_RS08075	0.81	-1.0
1,769,309	-		LRK55_RS08075	0.81	+0.6
1,769,371	+		LRK55_RS08075	0.88	+0.2
1,769,371	+		LRK55_RS08075	0.88	+0.7
1,769,371	+		LRK55_RS08075	0.88	-0.6
1,769,371	+		LRK55_RS08075	0.88	-0.9
1,769,371	+		LRK55_RS08075	0.88	-0.1
1,769,371	+		LRK55_RS08075	0.88	+0.4
1,769,371	+		LRK55_RS08075	0.88	+0.8
1,769,371	+		LRK55_RS08075	0.88	-0.5
1,769,372	-		LRK55_RS08075	0.88	+0.7
1,769,372	-		LRK55_RS08075	0.88	+0.4
1,769,372	-		LRK55_RS08075	0.88	+0.3
1,769,372	-		LRK55_RS08075	0.88	-0.8
1,769,372	-		LRK55_RS08075	0.88	+0.9
1,769,372	-		LRK55_RS08075	0.88	+1.6
1,769,372	-		LRK55_RS08075	0.88	+0.1
1,769,372	-		LRK55_RS08075	0.88	-0.1
1,769,372	-		LRK55_RS08075	0.88	+0.2
1,769,372	-		LRK55_RS08075	0.88	+0.2
1,769,432	+				-0.0
1,769,433	-				+0.4
1,769,433	-				+1.8
1,769,433	-				+1.0
1,769,433	-				+1.4
1,769,476	-				-1.7
1,769,476	-				+0.2
1,769,476	-				-1.6
1,769,479	+				-0.0
1,769,479	+				+1.1
1,769,479	+				-0.6
1,769,479	+				+0.7
1,769,479	+				+1.0
1,769,479	+				-0.1
1,769,479	+				+0.3
1,769,479	+				+0.7
1,769,479	+				-1.4
1,769,479	+				-0.3
1,769,479	+				-0.5
1,769,479	+				-1.0
1,769,480	-				+0.1
1,769,480	-				-0.4
1,769,480	-				-0.1
1,769,480	-				+0.8
1,769,480	-				+0.4
1,769,480	-				-0.1
1,769,480	-				+0.9
1,769,480	-				+0.6
1,769,480	-				-0.2
1,769,480	-				+0.5
1,769,480	-				+1.4
1,769,480	-				-0.5
1,769,480	-				-1.3
1,769,480	-				+0.5
1,769,480	-				-0.6
1,769,480	-				+0.0
1,769,480	-				+0.5
1,769,480	-				+0.5
1,769,482	+				-0.1
1,769,482	+				-0.5
1,769,482	+				-0.3
1,769,482	+				-1.1
1,769,482	+				-0.5
1,769,482	+				+0.1
1,769,482	+				-0.1
1,769,482	+				+0.6
1,769,482	+				+0.5
1,769,483	-				+0.2
1,769,483	-				+0.6
1,769,483	-				-1.0
1,769,483	-				-0.2
1,769,483	-				+0.7
1,769,483	-				-3.0
1,769,498	+				+0.5
1,769,499	-				-0.3
1,769,522	-				-0.1
1,769,534	+				-0.5
1,769,535	-				-1.3
1,769,537	+				+0.2
1,769,538	-				-0.6
1,769,538	-				-0.6
1,769,538	-				+0.4
1,769,538	-				+0.8
1,769,540	+				+0.6
1,769,540	+				-1.0
1,769,540	+				+0.5
1,769,541	-				+0.5
1,769,541	-				-2.1
1,769,541	-				+0.5
1,769,541	-				-0.3
1,769,572	+				+1.7
1,769,572	+				+0.5
1,769,572	+				-2.1
1,769,572	+				-0.4
1,769,572	+				-0.6
1,769,572	+				+0.9
1,769,573	-				+0.4
1,769,573	-				+0.1
1,769,573	-				+0.2
1,769,573	-				+0.2
1,769,573	-				+0.3
1,769,573	-				-1.4
1,769,573	-				-0.7
1,769,573	-				-0.0
1,769,573	-				+2.1
1,769,576	+				-0.7
1,769,576	+				-0.5
1,769,576	+				+0.5
1,769,576	+				-0.3
1,769,576	+				-2.0
1,769,585	+				-0.1
1,769,607	+				+0.3
1,769,607	+				+1.1
1,769,607	+				+0.6
1,769,608	-				+0.5
1,769,608	-				+0.5
1,769,608	-				-0.5
1,769,608	-				+0.2
1,769,608	-				+1.7
1,769,645	+				-1.9
1,769,645	+				-1.2
1,769,646	-				-2.0
1,769,646	-				-2.5
1,769,653	+				-0.3
1,769,653	+				+0.3
1,769,653	+				-0.3
1,769,653	+				-2.5
1,769,653	+				-0.7
1,769,653	+				-2.1
1,769,653	+				-3.4
1,769,653	+				-3.4
1,769,653	+				+1.3
1,769,654	-				-1.5
1,769,654	-				-2.9
1,769,654	-				+0.2
1,769,654	-				-0.5
1,769,654	-				+0.2
1,769,654	-				-1.0
1,769,654	-				-0.8
1,769,654	-				-1.9
1,769,654	-				-1.4
1,769,654	-				-1.9
1,769,654	-				-1.8
1,769,654	-				-0.8
1,769,654	-				+2.0
1,769,719	+		LRK55_RS08080	0.14	-0.6
1,769,719	+		LRK55_RS08080	0.14	-0.3
1,769,777	+		LRK55_RS08080	0.22	-0.5
1,769,777	+		LRK55_RS08080	0.22	+2.9
1,769,777	+		LRK55_RS08080	0.22	-0.2
1,769,778	-		LRK55_RS08080	0.22	-0.6
1,769,778	-		LRK55_RS08080	0.22	-0.4
1,769,778	-		LRK55_RS08080	0.22	-0.6
1,769,778	-		LRK55_RS08080	0.22	+0.5
1,769,778	-		LRK55_RS08080	0.22	-0.4
1,769,922	+		LRK55_RS08080	0.42	-1.4
1,769,988	-		LRK55_RS08080	0.50	+0.6
1,769,988	-		LRK55_RS08080	0.50	-0.1
1,769,988	-		LRK55_RS08080	0.50	+0.6
1,769,988	-		LRK55_RS08080	0.50	+0.1
1,769,988	-		LRK55_RS08080	0.50	+0.7
1,769,991	+		LRK55_RS08080	0.51	-0.3
1,769,991	+		LRK55_RS08080	0.51	-1.0
1,769,991	+		LRK55_RS08080	0.51	+0.3
1,769,991	+		LRK55_RS08080	0.51	-0.1
1,769,991	+		LRK55_RS08080	0.51	-0.9
1,769,992	-		LRK55_RS08080	0.51	+0.3
1,769,992	-		LRK55_RS08080	0.51	+0.6
1,769,992	-		LRK55_RS08080	0.51	+0.4
1,769,992	-		LRK55_RS08080	0.51	-0.1
1,770,029	+		LRK55_RS08080	0.56	+0.1
1,770,029	+		LRK55_RS08080	0.56	-0.9
1,770,029	+		LRK55_RS08080	0.56	+0.4
1,770,030	-		LRK55_RS08080	0.56	-3.1
1,770,030	-		LRK55_RS08080	0.56	+0.2
1,770,030	-		LRK55_RS08080	0.56	+0.2
1,770,030	-		LRK55_RS08080	0.56	+0.6
1,770,044	+		LRK55_RS08080	0.58	-0.1
1,770,045	-		LRK55_RS08080	0.58	-0.5
1,770,072	+		LRK55_RS08080	0.62	-1.6
1,770,072	+		LRK55_RS08080	0.62	+1.3
1,770,072	+		LRK55_RS08080	0.62	-2.2
1,770,073	-		LRK55_RS08080	0.62	+0.1
1,770,073	-		LRK55_RS08080	0.62	+0.6
1,770,079	+		LRK55_RS08080	0.63	-0.6
1,770,079	+		LRK55_RS08080	0.63	+1.1
1,770,079	+		LRK55_RS08080	0.63	-0.0
1,770,079	+		LRK55_RS08080	0.63	+0.2
1,770,080	-		LRK55_RS08080	0.63	+0.7
1,770,080	-		LRK55_RS08080	0.63	-0.5
1,770,080	-		LRK55_RS08080	0.63	+1.5
1,770,080	-		LRK55_RS08080	0.63	-0.1
1,770,128	+		LRK55_RS08080	0.69	-0.0
1,770,150	+		LRK55_RS08080	0.72	-0.4
1,770,151	-		LRK55_RS08080	0.72	-0.3
1,770,151	-		LRK55_RS08080	0.72	+1.7
1,770,236	+		LRK55_RS08080	0.84	+0.4
1,770,236	+		LRK55_RS08080	0.84	+0.1
1,770,236	+		LRK55_RS08080	0.84	-0.1
1,770,236	+		LRK55_RS08080	0.84	-0.3
1,770,236	+		LRK55_RS08080	0.84	+0.4
1,770,236	+		LRK55_RS08080	0.84	+0.1
1,770,236	+		LRK55_RS08080	0.84	+1.1
1,770,236	+		LRK55_RS08080	0.84	+0.2
1,770,236	+		LRK55_RS08080	0.84	-0.6
1,770,236	+		LRK55_RS08080	0.84	-0.8
1,770,236	+		LRK55_RS08080	0.84	+0.4
1,770,237	-		LRK55_RS08080	0.84	+0.6
1,770,237	-		LRK55_RS08080	0.84	+0.7
1,770,237	-		LRK55_RS08080	0.84	+0.9
1,770,237	-		LRK55_RS08080	0.84	+0.1
1,770,237	-		LRK55_RS08080	0.84	+0.5
1,770,237	-		LRK55_RS08080	0.84	+0.9
1,770,237	-		LRK55_RS08080	0.84	+0.1
1,770,237	-		LRK55_RS08080	0.84	+0.0
1,770,237	-		LRK55_RS08080	0.84	+0.4
1,770,287	+				-1.0
1,770,288	-				+0.3
1,770,310	+				+0.1
1,770,310	+				-1.6
1,770,311	-				-0.8
1,770,315	-				+0.3
1,770,315	-				+0.0
1,770,315	-				-2.1
1,770,355	-				-0.1
1,770,355	-				-0.1
1,770,355	-				+0.5
1,770,405	+		LRK55_RS08085	0.10	-0.3
1,770,405	+		LRK55_RS08085	0.10	+0.6
1,770,405	+		LRK55_RS08085	0.10	+0.2
1,770,406	-		LRK55_RS08085	0.11	-3.3
1,770,427	+		LRK55_RS08085	0.15	+0.2
1,770,428	-		LRK55_RS08085	0.15	-0.1
1,770,436	+		LRK55_RS08085	0.16	-0.0
1,770,436	+		LRK55_RS08085	0.16	-0.4
1,770,436	+		LRK55_RS08085	0.16	-1.5
1,770,436	+		LRK55_RS08085	0.16	+0.7
1,770,436	+		LRK55_RS08085	0.16	+0.3
1,770,436	+		LRK55_RS08085	0.16	+0.4
1,770,437	-		LRK55_RS08085	0.17	-1.9
1,770,437	-		LRK55_RS08085	0.17	-0.8
1,770,437	-		LRK55_RS08085	0.17	+0.5
1,770,437	-		LRK55_RS08085	0.17	-1.0
1,770,437	-		LRK55_RS08085	0.17	+0.3
1,770,437	-		LRK55_RS08085	0.17	-2.4
1,770,478	+		LRK55_RS08085	0.24	-0.0
1,770,479	-		LRK55_RS08085	0.25	-0.1
1,770,479	-		LRK55_RS08085	0.25	-0.4