Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS07980

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS07965 and LRK55_RS07970 are separated by 32 nucleotidesLRK55_RS07970 and LRK55_RS07975 overlap by 4 nucleotidesLRK55_RS07975 and LRK55_RS07980 are separated by 191 nucleotidesLRK55_RS07980 and LRK55_RS07985 overlap by 4 nucleotidesLRK55_RS07985 and LRK55_RS07990 overlap by 4 nucleotidesLRK55_RS07990 and LRK55_RS07995 are separated by 23 nucleotides LRK55_RS07965: LRK55_RS07965 - hypothetical protein, at 1,749,594 to 1,750,631 _RS07965 LRK55_RS07970: LRK55_RS07970 - cupin domain-containing protein, at 1,750,664 to 1,751,044 _RS07970 LRK55_RS07975: LRK55_RS07975 - hypothetical protein, at 1,751,041 to 1,751,343 _RS07975 LRK55_RS07980: LRK55_RS07980 - AI-2E family transporter, at 1,751,535 to 1,752,725 _RS07980 LRK55_RS07985: LRK55_RS07985 - hypothetical protein, at 1,752,722 to 1,753,045 _RS07985 LRK55_RS07990: LRK55_RS07990 - hypothetical protein, at 1,753,042 to 1,753,527 _RS07990 LRK55_RS07995: LRK55_RS07995 - DUF883 family protein, at 1,753,551 to 1,753,913 _RS07995 Position (kb) 1751 1752 1753Strain fitness (log2 ratio) -3 -2 -1 0 1at 1750.666 kb on - strandat 1750.666 kb on - strandat 1750.666 kb on - strandat 1750.690 kb on + strandat 1750.690 kb on + strandat 1750.692 kb on + strandat 1750.692 kb on + strandat 1750.692 kb on + strandat 1750.693 kb on - strandat 1750.693 kb on - strandat 1750.693 kb on - strandat 1750.693 kb on - strandat 1750.800 kb on + strand, within LRK55_RS07970at 1750.800 kb on + strand, within LRK55_RS07970at 1750.800 kb on + strand, within LRK55_RS07970at 1750.801 kb on - strand, within LRK55_RS07970at 1750.801 kb on - strand, within LRK55_RS07970at 1750.801 kb on - strand, within LRK55_RS07970at 1750.801 kb on - strand, within LRK55_RS07970at 1750.801 kb on - strand, within LRK55_RS07970at 1750.801 kb on - strand, within LRK55_RS07970at 1750.801 kb on - strand, within LRK55_RS07970at 1750.941 kb on + strand, within LRK55_RS07970at 1750.941 kb on + strand, within LRK55_RS07970at 1750.942 kb on - strand, within LRK55_RS07970at 1750.942 kb on - strand, within LRK55_RS07970at 1750.942 kb on - strand, within LRK55_RS07970at 1750.942 kb on - strand, within LRK55_RS07970at 1750.942 kb on - strand, within LRK55_RS07970at 1750.942 kb on - strand, within LRK55_RS07970at 1750.942 kb on - strand, within LRK55_RS07970at 1750.942 kb on - strand, within LRK55_RS07970at 1751.060 kb on + strandat 1751.060 kb on + strandat 1751.061 kb on - strandat 1751.061 kb on - strandat 1751.123 kb on + strand, within LRK55_RS07975at 1751.123 kb on + strand, within LRK55_RS07975at 1751.123 kb on + strand, within LRK55_RS07975at 1751.217 kb on - strand, within LRK55_RS07975at 1751.222 kb on + strand, within LRK55_RS07975at 1751.222 kb on + strand, within LRK55_RS07975at 1751.222 kb on + strand, within LRK55_RS07975at 1751.222 kb on + strand, within LRK55_RS07975at 1751.222 kb on + strand, within LRK55_RS07975at 1751.222 kb on + strand, within LRK55_RS07975at 1751.223 kb on - strand, within LRK55_RS07975at 1751.223 kb on - strand, within LRK55_RS07975at 1751.223 kb on - strand, within LRK55_RS07975at 1751.223 kb on - strand, within LRK55_RS07975at 1751.223 kb on - strand, within LRK55_RS07975at 1751.225 kb on + strand, within LRK55_RS07975at 1751.226 kb on - strand, within LRK55_RS07975at 1751.226 kb on - strand, within LRK55_RS07975at 1751.226 kb on - strand, within LRK55_RS07975at 1751.226 kb on - strand, within LRK55_RS07975at 1751.226 kb on - strand, within LRK55_RS07975at 1751.226 kb on - strand, within LRK55_RS07975at 1751.265 kb on - strand, within LRK55_RS07975at 1751.265 kb on - strand, within LRK55_RS07975at 1751.265 kb on - strand, within LRK55_RS07975at 1751.532 kb on + strandat 1751.532 kb on + strandat 1751.532 kb on + strandat 1751.532 kb on + strandat 1751.532 kb on + strandat 1751.532 kb on + strandat 1751.532 kb on + strandat 1751.533 kb on - strandat 1751.533 kb on - strandat 1751.533 kb on - strandat 1751.536 kb on + strandat 1751.536 kb on + strandat 1751.537 kb on - strandat 1751.537 kb on - strandat 1751.537 kb on - strandat 1751.537 kb on - strandat 1751.800 kb on + strand, within LRK55_RS07980at 1751.800 kb on + strand, within LRK55_RS07980at 1751.800 kb on + strand, within LRK55_RS07980at 1751.801 kb on - strand, within LRK55_RS07980at 1751.852 kb on - strand, within LRK55_RS07980at 1751.852 kb on - strand, within LRK55_RS07980at 1751.852 kb on - strand, within LRK55_RS07980at 1751.911 kb on + strand, within LRK55_RS07980at 1751.911 kb on + strand, within LRK55_RS07980at 1751.912 kb on - strand, within LRK55_RS07980at 1751.912 kb on - strand, within LRK55_RS07980at 1751.912 kb on - strand, within LRK55_RS07980at 1751.912 kb on - strand, within LRK55_RS07980at 1751.912 kb on - strand, within LRK55_RS07980at 1751.912 kb on - strand, within LRK55_RS07980at 1751.912 kb on - strand, within LRK55_RS07980at 1751.977 kb on + strand, within LRK55_RS07980at 1752.031 kb on + strand, within LRK55_RS07980at 1752.032 kb on - strand, within LRK55_RS07980at 1752.054 kb on + strand, within LRK55_RS07980at 1752.054 kb on + strand, within LRK55_RS07980at 1752.082 kb on + strand, within LRK55_RS07980at 1752.083 kb on - strand, within LRK55_RS07980at 1752.083 kb on - strand, within LRK55_RS07980at 1752.517 kb on + strand, within LRK55_RS07980at 1752.517 kb on + strand, within LRK55_RS07980at 1752.517 kb on + strand, within LRK55_RS07980at 1752.517 kb on + strand, within LRK55_RS07980at 1752.517 kb on + strand, within LRK55_RS07980at 1752.518 kb on - strand, within LRK55_RS07980at 1752.518 kb on - strand, within LRK55_RS07980at 1752.518 kb on - strand, within LRK55_RS07980at 1752.518 kb on - strand, within LRK55_RS07980at 1752.518 kb on - strand, within LRK55_RS07980at 1752.518 kb on - strand, within LRK55_RS07980at 1752.518 kb on - strand, within LRK55_RS07980at 1752.890 kb on + strand, within LRK55_RS07985at 1752.890 kb on + strand, within LRK55_RS07985at 1753.630 kb on + strand, within LRK55_RS07995at 1753.630 kb on + strand, within LRK55_RS07995at 1753.631 kb on - strand, within LRK55_RS07995at 1753.638 kb on + strand, within LRK55_RS07995at 1753.681 kb on + strand, within LRK55_RS07995at 1753.681 kb on + strand, within LRK55_RS07995

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,750,666 - -1.3
1,750,666 - +0.5
1,750,666 - +0.3
1,750,690 + +0.4
1,750,690 + -0.3
1,750,692 + +0.1
1,750,692 + +1.2
1,750,692 + +0.6
1,750,693 - -0.4
1,750,693 - +0.9
1,750,693 - +0.4
1,750,693 - -0.6
1,750,800 + LRK55_RS07970 0.36 +0.4
1,750,800 + LRK55_RS07970 0.36 +0.5
1,750,800 + LRK55_RS07970 0.36 -0.5
1,750,801 - LRK55_RS07970 0.36 -0.7
1,750,801 - LRK55_RS07970 0.36 +0.7
1,750,801 - LRK55_RS07970 0.36 -0.7
1,750,801 - LRK55_RS07970 0.36 +1.4
1,750,801 - LRK55_RS07970 0.36 +1.1
1,750,801 - LRK55_RS07970 0.36 +0.0
1,750,801 - LRK55_RS07970 0.36 +0.0
1,750,941 + LRK55_RS07970 0.73 -2.2
1,750,941 + LRK55_RS07970 0.73 +0.1
1,750,942 - LRK55_RS07970 0.73 -0.2
1,750,942 - LRK55_RS07970 0.73 +1.1
1,750,942 - LRK55_RS07970 0.73 +0.4
1,750,942 - LRK55_RS07970 0.73 -0.3
1,750,942 - LRK55_RS07970 0.73 -2.0
1,750,942 - LRK55_RS07970 0.73 +0.7
1,750,942 - LRK55_RS07970 0.73 +0.8
1,750,942 - LRK55_RS07970 0.73 -0.5
1,751,060 + -0.6
1,751,060 + +0.1
1,751,061 - +0.7
1,751,061 - -0.3
1,751,123 + LRK55_RS07975 0.27 -0.9
1,751,123 + LRK55_RS07975 0.27 -1.0
1,751,123 + LRK55_RS07975 0.27 +0.2
1,751,217 - LRK55_RS07975 0.58 +0.3
1,751,222 + LRK55_RS07975 0.60 +0.3
1,751,222 + LRK55_RS07975 0.60 +0.6
1,751,222 + LRK55_RS07975 0.60 +0.1
1,751,222 + LRK55_RS07975 0.60 -0.9
1,751,222 + LRK55_RS07975 0.60 +0.0
1,751,222 + LRK55_RS07975 0.60 -0.3
1,751,223 - LRK55_RS07975 0.60 -0.1
1,751,223 - LRK55_RS07975 0.60 +0.5
1,751,223 - LRK55_RS07975 0.60 +0.5
1,751,223 - LRK55_RS07975 0.60 +0.8
1,751,223 - LRK55_RS07975 0.60 +0.7
1,751,225 + LRK55_RS07975 0.61 -1.6
1,751,226 - LRK55_RS07975 0.61 -0.3
1,751,226 - LRK55_RS07975 0.61 -0.1
1,751,226 - LRK55_RS07975 0.61 +0.7
1,751,226 - LRK55_RS07975 0.61 +0.1
1,751,226 - LRK55_RS07975 0.61 +0.0
1,751,226 - LRK55_RS07975 0.61 +0.1
1,751,265 - LRK55_RS07975 0.74 -1.9
1,751,265 - LRK55_RS07975 0.74 -1.0
1,751,265 - LRK55_RS07975 0.74 -0.3
1,751,532 + +0.0
1,751,532 + +0.5
1,751,532 + -0.5
1,751,532 + -0.1
1,751,532 + +0.3
1,751,532 + -0.6
1,751,532 + -1.3
1,751,533 - -1.0
1,751,533 - -0.7
1,751,533 - +0.4
1,751,536 + -1.6
1,751,536 + -0.3
1,751,537 - +0.3
1,751,537 - -0.2
1,751,537 - +1.1
1,751,537 - -1.3
1,751,800 + LRK55_RS07980 0.22 -0.6
1,751,800 + LRK55_RS07980 0.22 -0.0
1,751,800 + LRK55_RS07980 0.22 -0.3
1,751,801 - LRK55_RS07980 0.22 -1.6
1,751,852 - LRK55_RS07980 0.27 -0.5
1,751,852 - LRK55_RS07980 0.27 -0.5
1,751,852 - LRK55_RS07980 0.27 -0.2
1,751,911 + LRK55_RS07980 0.32 +0.8
1,751,911 + LRK55_RS07980 0.32 -1.6
1,751,912 - LRK55_RS07980 0.32 -0.6
1,751,912 - LRK55_RS07980 0.32 -1.3
1,751,912 - LRK55_RS07980 0.32 +0.1
1,751,912 - LRK55_RS07980 0.32 +0.4
1,751,912 - LRK55_RS07980 0.32 -0.0
1,751,912 - LRK55_RS07980 0.32 +1.0
1,751,912 - LRK55_RS07980 0.32 +1.0
1,751,977 + LRK55_RS07980 0.37 +0.2
1,752,031 + LRK55_RS07980 0.42 -0.1
1,752,032 - LRK55_RS07980 0.42 -0.7
1,752,054 + LRK55_RS07980 0.44 +0.6
1,752,054 + LRK55_RS07980 0.44 -1.8
1,752,082 + LRK55_RS07980 0.46 +0.2
1,752,083 - LRK55_RS07980 0.46 +0.4
1,752,083 - LRK55_RS07980 0.46 +1.0
1,752,517 + LRK55_RS07980 0.82 -0.0
1,752,517 + LRK55_RS07980 0.82 +0.5
1,752,517 + LRK55_RS07980 0.82 +1.2
1,752,517 + LRK55_RS07980 0.82 -0.1
1,752,517 + LRK55_RS07980 0.82 -1.8
1,752,518 - LRK55_RS07980 0.83 -0.1
1,752,518 - LRK55_RS07980 0.83 -0.7
1,752,518 - LRK55_RS07980 0.83 +0.6
1,752,518 - LRK55_RS07980 0.83 +1.0
1,752,518 - LRK55_RS07980 0.83 +0.2
1,752,518 - LRK55_RS07980 0.83 -2.1
1,752,518 - LRK55_RS07980 0.83 -0.9
1,752,890 + LRK55_RS07985 0.52 +0.7
1,752,890 + LRK55_RS07985 0.52 -1.0
1,753,630 + LRK55_RS07995 0.22 -0.1
1,753,630 + LRK55_RS07995 0.22 +1.0
1,753,631 - LRK55_RS07995 0.22 -0.6
1,753,638 + LRK55_RS07995 0.24 +0.5
1,753,681 + LRK55_RS07995 0.36 +0.6
1,753,681 + LRK55_RS07995 0.36 -2.9

Or see this region's nucleotide sequence