Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS05635

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS05630 and LRK55_RS05635 are separated by 3 nucleotidesLRK55_RS05635 and LRK55_RS05640 are separated by 148 nucleotides LRK55_RS05630: LRK55_RS05630 - pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha, at 1,221,365 to 1,222,450 _RS05630 LRK55_RS05635: LRK55_RS05635 - alpha-ketoacid dehydrogenase subunit beta, at 1,222,454 to 1,223,434 _RS05635 LRK55_RS05640: LRK55_RS05640 - dihydrolipoamide acetyltransferase family protein, at 1,223,583 to 1,224,992 _RS05640 Position (kb) 1222 1223 1224Strain fitness (log2 ratio) -3 -2 -1 0 1at 1222.418 kb on + strandat 1222.418 kb on + strandat 1222.418 kb on + strandat 1222.418 kb on + strandat 1222.418 kb on + strandat 1222.418 kb on + strandat 1222.419 kb on - strandat 1223.480 kb on + strandat 1223.480 kb on + strandat 1223.565 kb on + strandat 1223.565 kb on + strandat 1223.565 kb on + strandat 1223.565 kb on + strandat 1223.565 kb on + strandat 1223.565 kb on + strandat 1223.565 kb on + strandat 1223.565 kb on + strandat 1223.565 kb on + strandat 1223.565 kb on + strandat 1223.565 kb on + strandat 1223.565 kb on + strandat 1223.566 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,222,418 + +0.4
1,222,418 + -1.7
1,222,418 + -0.8
1,222,418 + -0.3
1,222,418 + -0.2
1,222,418 + +0.3
1,222,419 - -2.0
1,223,480 + -1.6
1,223,480 + -1.6
1,223,565 + +0.8
1,223,565 + +0.6
1,223,565 + -1.2
1,223,565 + -1.1
1,223,565 + -1.4
1,223,565 + +0.6
1,223,565 + -2.1
1,223,565 + -0.2
1,223,565 + -0.2
1,223,565 + -1.3
1,223,565 + -0.9
1,223,565 + -0.9
1,223,566 - -3.1

Or see this region's nucleotide sequence