Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS04425

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS04420 and LRK55_RS04425 are separated by 75 nucleotidesLRK55_RS04425 and LRK55_RS04430 are separated by 6 nucleotidesLRK55_RS04430 and LRK55_RS04435 overlap by 4 nucleotidesLRK55_RS04435 and LRK55_RS04440 are separated by 136 nucleotides LRK55_RS04420: LRK55_RS04420 - acyltransferase, at 943,454 to 944,647 _RS04420 LRK55_RS04425: LRK55_RS04425 - DUF427 domain-containing protein, at 944,723 to 944,851 _RS04425 LRK55_RS04430: LRK55_RS04430 - DUF427 domain-containing protein, at 944,858 to 944,995 _RS04430 LRK55_RS04435: LRK55_RS04435 - peptide deformylase, at 944,992 to 945,531 _RS04435 LRK55_RS04440: LRK55_RS04440 - DUF4197 domain-containing protein, at 945,668 to 946,465 _RS04440 Position (kb) 944 945Strain fitness (log2 ratio) -2 -1 0 1 2at 943.815 kb on + strand, within LRK55_RS04420at 943.815 kb on + strand, within LRK55_RS04420at 943.815 kb on + strand, within LRK55_RS04420at 943.815 kb on + strand, within LRK55_RS04420at 943.815 kb on + strand, within LRK55_RS04420at 943.816 kb on - strand, within LRK55_RS04420at 943.816 kb on - strand, within LRK55_RS04420at 943.816 kb on - strand, within LRK55_RS04420at 943.816 kb on - strand, within LRK55_RS04420at 943.906 kb on + strand, within LRK55_RS04420at 943.907 kb on - strand, within LRK55_RS04420at 943.907 kb on - strand, within LRK55_RS04420at 943.907 kb on - strand, within LRK55_RS04420at 943.983 kb on + strand, within LRK55_RS04420at 943.983 kb on + strand, within LRK55_RS04420at 943.983 kb on + strand, within LRK55_RS04420at 943.983 kb on + strand, within LRK55_RS04420at 943.984 kb on - strand, within LRK55_RS04420at 943.984 kb on - strand, within LRK55_RS04420at 943.984 kb on - strand, within LRK55_RS04420at 943.984 kb on - strand, within LRK55_RS04420at 943.984 kb on - strand, within LRK55_RS04420at 944.077 kb on + strand, within LRK55_RS04420at 944.077 kb on + strand, within LRK55_RS04420at 944.077 kb on + strand, within LRK55_RS04420at 944.078 kb on - strand, within LRK55_RS04420at 944.078 kb on - strand, within LRK55_RS04420at 944.118 kb on + strand, within LRK55_RS04420at 944.118 kb on + strand, within LRK55_RS04420at 944.119 kb on - strand, within LRK55_RS04420at 944.119 kb on - strand, within LRK55_RS04420at 944.119 kb on - strand, within LRK55_RS04420at 944.190 kb on + strand, within LRK55_RS04420at 944.191 kb on - strand, within LRK55_RS04420at 944.191 kb on - strand, within LRK55_RS04420at 944.191 kb on - strand, within LRK55_RS04420at 944.262 kb on + strand, within LRK55_RS04420at 944.263 kb on - strand, within LRK55_RS04420at 944.263 kb on - strand, within LRK55_RS04420at 944.349 kb on + strand, within LRK55_RS04420at 944.349 kb on + strand, within LRK55_RS04420at 944.349 kb on + strand, within LRK55_RS04420at 944.349 kb on + strand, within LRK55_RS04420at 944.350 kb on - strand, within LRK55_RS04420at 944.350 kb on - strand, within LRK55_RS04420at 944.350 kb on - strand, within LRK55_RS04420at 944.350 kb on - strand, within LRK55_RS04420at 944.350 kb on - strand, within LRK55_RS04420at 944.350 kb on - strand, within LRK55_RS04420at 944.350 kb on - strand, within LRK55_RS04420at 944.452 kb on - strand, within LRK55_RS04420at 944.460 kb on + strand, within LRK55_RS04420at 944.461 kb on - strand, within LRK55_RS04420at 944.461 kb on - strand, within LRK55_RS04420at 944.636 kb on + strandat 944.637 kb on - strandat 944.637 kb on - strandat 944.790 kb on + strand, within LRK55_RS04425at 944.793 kb on + strand, within LRK55_RS04425at 944.793 kb on + strand, within LRK55_RS04425at 944.793 kb on + strand, within LRK55_RS04425at 944.793 kb on + strand, within LRK55_RS04425at 944.793 kb on + strand, within LRK55_RS04425at 944.793 kb on + strand, within LRK55_RS04425at 944.793 kb on + strand, within LRK55_RS04425at 944.793 kb on + strand, within LRK55_RS04425at 944.794 kb on - strand, within LRK55_RS04425at 944.794 kb on - strand, within LRK55_RS04425at 944.794 kb on - strand, within LRK55_RS04425at 944.794 kb on - strand, within LRK55_RS04425at 944.794 kb on - strand, within LRK55_RS04425at 944.794 kb on - strand, within LRK55_RS04425at 944.838 kb on + strand, within LRK55_RS04425at 944.841 kb on + strandat 944.842 kb on - strandat 944.842 kb on - strandat 944.842 kb on - strandat 945.039 kb on - strandat 945.191 kb on + strand, within LRK55_RS04435at 945.192 kb on - strand, within LRK55_RS04435at 945.301 kb on + strand, within LRK55_RS04435at 945.786 kb on + strand, within LRK55_RS04440at 945.786 kb on + strand, within LRK55_RS04440at 945.786 kb on + strand, within LRK55_RS04440at 945.787 kb on - strand, within LRK55_RS04440at 945.787 kb on - strand, within LRK55_RS04440

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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943,815 + LRK55_RS04420 0.30 -1.0
943,815 + LRK55_RS04420 0.30 -0.7
943,815 + LRK55_RS04420 0.30 -1.5
943,815 + LRK55_RS04420 0.30 +1.3
943,815 + LRK55_RS04420 0.30 +0.8
943,816 - LRK55_RS04420 0.30 -0.6
943,816 - LRK55_RS04420 0.30 +2.0
943,816 - LRK55_RS04420 0.30 +0.1
943,816 - LRK55_RS04420 0.30 +0.6
943,906 + LRK55_RS04420 0.38 -0.5
943,907 - LRK55_RS04420 0.38 +0.6
943,907 - LRK55_RS04420 0.38 +0.5
943,907 - LRK55_RS04420 0.38 +2.0
943,983 + LRK55_RS04420 0.44 -1.1
943,983 + LRK55_RS04420 0.44 +0.6
943,983 + LRK55_RS04420 0.44 -0.7
943,983 + LRK55_RS04420 0.44 -0.5
943,984 - LRK55_RS04420 0.44 +1.0
943,984 - LRK55_RS04420 0.44 -0.4
943,984 - LRK55_RS04420 0.44 -0.6
943,984 - LRK55_RS04420 0.44 -1.0
943,984 - LRK55_RS04420 0.44 +0.4
944,077 + LRK55_RS04420 0.52 +0.3
944,077 + LRK55_RS04420 0.52 +0.5
944,077 + LRK55_RS04420 0.52 +0.1
944,078 - LRK55_RS04420 0.52 -0.8
944,078 - LRK55_RS04420 0.52 -1.2
944,118 + LRK55_RS04420 0.56 -0.8
944,118 + LRK55_RS04420 0.56 +0.1
944,119 - LRK55_RS04420 0.56 +0.0
944,119 - LRK55_RS04420 0.56 -0.5
944,119 - LRK55_RS04420 0.56 -0.1
944,190 + LRK55_RS04420 0.62 -1.4
944,191 - LRK55_RS04420 0.62 +0.5
944,191 - LRK55_RS04420 0.62 -0.5
944,191 - LRK55_RS04420 0.62 +0.4
944,262 + LRK55_RS04420 0.68 -2.2
944,263 - LRK55_RS04420 0.68 -1.3
944,263 - LRK55_RS04420 0.68 +0.6
944,349 + LRK55_RS04420 0.75 +0.4
944,349 + LRK55_RS04420 0.75 +0.2
944,349 + LRK55_RS04420 0.75 +0.2
944,349 + LRK55_RS04420 0.75 -0.9
944,350 - LRK55_RS04420 0.75 +0.6
944,350 - LRK55_RS04420 0.75 -0.5
944,350 - LRK55_RS04420 0.75 +0.3
944,350 - LRK55_RS04420 0.75 +1.5
944,350 - LRK55_RS04420 0.75 +0.3
944,350 - LRK55_RS04420 0.75 -1.4
944,350 - LRK55_RS04420 0.75 +1.1
944,452 - LRK55_RS04420 0.84 +1.0
944,460 + LRK55_RS04420 0.84 +0.7
944,461 - LRK55_RS04420 0.84 +0.6
944,461 - LRK55_RS04420 0.84 -0.2
944,636 + -0.8
944,637 - +0.4
944,637 - -0.5
944,790 + LRK55_RS04425 0.52 -1.4
944,793 + LRK55_RS04425 0.54 -0.2
944,793 + LRK55_RS04425 0.54 +0.1
944,793 + LRK55_RS04425 0.54 -0.1
944,793 + LRK55_RS04425 0.54 -0.0
944,793 + LRK55_RS04425 0.54 -1.7
944,793 + LRK55_RS04425 0.54 +1.3
944,793 + LRK55_RS04425 0.54 -0.4
944,793 + LRK55_RS04425 0.54 +0.6
944,794 - LRK55_RS04425 0.55 -0.2
944,794 - LRK55_RS04425 0.55 -0.0
944,794 - LRK55_RS04425 0.55 +0.7
944,794 - LRK55_RS04425 0.55 +0.1
944,794 - LRK55_RS04425 0.55 +0.2
944,794 - LRK55_RS04425 0.55 -0.3
944,838 + LRK55_RS04425 0.89 -0.0
944,841 + -0.4
944,842 - +1.2
944,842 - +1.1
944,842 - -0.8
945,039 - +2.1
945,191 + LRK55_RS04435 0.37 -1.2
945,192 - LRK55_RS04435 0.37 +0.6
945,301 + LRK55_RS04435 0.57 +0.4
945,786 + LRK55_RS04440 0.15 -0.5
945,786 + LRK55_RS04440 0.15 +0.1
945,786 + LRK55_RS04440 0.15 +0.6
945,787 - LRK55_RS04440 0.15 -2.2
945,787 - LRK55_RS04440 0.15 +0.9

Or see this region's nucleotide sequence