Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS02190 and LRK55_RS02195 are separated by 110 nucleotides LRK55_RS02195 and LRK55_RS02200 are separated by 145 nucleotides LRK55_RS02200 and LRK55_RS02205 are separated by 120 nucleotides
LRK55_RS02190: LRK55_RS02190 - TonB-dependent siderophore receptor, at 478,627 to 480,726
_RS02190
LRK55_RS02195: LRK55_RS02195 - RNA polymerase-binding protein DksA, at 480,837 to 482,096
_RS02195
LRK55_RS02200: LRK55_RS02200 - membrane protein insertion efficiency factor YidD, at 482,242 to 482,484
_RS02200
LRK55_RS02205: LRK55_RS02205 - GTP cyclohydrolase FolE2, at 482,605 to 483,552
_RS02205
Position (kb) 480
481
482
483 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 479.875 kb on + strand, within LRK55_RS02190 at 479.876 kb on - strand, within LRK55_RS02190 at 479.876 kb on - strand, within LRK55_RS02190 at 479.876 kb on - strand, within LRK55_RS02190 at 479.876 kb on - strand, within LRK55_RS02190 at 479.876 kb on - strand, within LRK55_RS02190 at 479.933 kb on - strand, within LRK55_RS02190 at 479.953 kb on - strand, within LRK55_RS02190 at 480.052 kb on + strand, within LRK55_RS02190 at 480.052 kb on + strand, within LRK55_RS02190 at 480.052 kb on + strand, within LRK55_RS02190 at 480.052 kb on + strand, within LRK55_RS02190 at 480.052 kb on + strand, within LRK55_RS02190 at 480.052 kb on + strand, within LRK55_RS02190 at 480.052 kb on + strand, within LRK55_RS02190 at 480.052 kb on + strand, within LRK55_RS02190 at 480.053 kb on - strand, within LRK55_RS02190 at 480.053 kb on - strand, within LRK55_RS02190 at 480.053 kb on - strand, within LRK55_RS02190 at 480.053 kb on - strand, within LRK55_RS02190 at 480.053 kb on - strand, within LRK55_RS02190 at 480.053 kb on - strand, within LRK55_RS02190 at 480.053 kb on - strand, within LRK55_RS02190 at 480.053 kb on - strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.056 kb on - strand, within LRK55_RS02190 at 480.056 kb on - strand, within LRK55_RS02190 at 480.056 kb on - strand, within LRK55_RS02190 at 480.056 kb on - strand, within LRK55_RS02190 at 480.056 kb on - strand, within LRK55_RS02190 at 480.056 kb on - strand, within LRK55_RS02190 at 480.056 kb on - strand, within LRK55_RS02190 at 480.056 kb on - strand, within LRK55_RS02190 at 480.166 kb on + strand, within LRK55_RS02190 at 480.166 kb on + strand, within LRK55_RS02190 at 480.166 kb on + strand, within LRK55_RS02190 at 480.166 kb on + strand, within LRK55_RS02190 at 480.166 kb on + strand, within LRK55_RS02190 at 480.166 kb on + strand, within LRK55_RS02190 at 480.166 kb on + strand, within LRK55_RS02190 at 480.166 kb on + strand, within LRK55_RS02190 at 480.167 kb on - strand, within LRK55_RS02190 at 480.167 kb on - strand, within LRK55_RS02190 at 480.167 kb on - strand, within LRK55_RS02190 at 480.167 kb on - strand, within LRK55_RS02190 at 480.167 kb on - strand, within LRK55_RS02190 at 480.167 kb on - strand, within LRK55_RS02190 at 480.167 kb on - strand, within LRK55_RS02190 at 480.346 kb on + strand, within LRK55_RS02190 at 480.347 kb on - strand, within LRK55_RS02190 at 480.554 kb on - strand at 480.554 kb on - strand at 480.554 kb on - strand at 480.554 kb on - strand at 480.580 kb on + strand at 480.637 kb on + strand at 480.637 kb on + strand at 480.637 kb on + strand at 480.637 kb on + strand at 480.638 kb on - strand at 480.638 kb on - strand at 480.638 kb on - strand at 480.638 kb on - strand at 480.724 kb on + strand at 480.724 kb on + strand at 480.724 kb on + strand at 480.725 kb on - strand at 480.725 kb on - strand at 480.725 kb on - strand at 481.459 kb on - strand, within LRK55_RS02195 at 482.078 kb on + strand at 482.079 kb on - strand at 482.079 kb on - strand at 482.079 kb on - strand at 482.097 kb on - strand at 482.097 kb on - strand at 482.134 kb on - strand at 482.134 kb on - strand at 482.134 kb on - strand at 482.134 kb on - strand at 482.134 kb on - strand at 482.136 kb on - strand at 482.136 kb on - strand at 482.136 kb on - strand at 482.149 kb on + strand at 482.150 kb on - strand at 482.174 kb on + strand at 482.174 kb on + strand at 482.174 kb on + strand at 482.174 kb on + strand at 482.174 kb on + strand at 482.175 kb on - strand at 482.175 kb on - strand at 482.175 kb on - strand at 482.175 kb on - strand at 482.175 kb on - strand at 482.180 kb on + strand at 482.180 kb on + strand at 482.180 kb on + strand at 482.180 kb on + strand at 482.180 kb on + strand at 482.180 kb on + strand at 482.180 kb on + strand at 482.180 kb on + strand at 482.180 kb on + strand at 482.180 kb on + strand at 482.180 kb on + strand at 482.180 kb on + strand at 482.180 kb on + strand at 482.181 kb on - strand at 482.181 kb on - strand at 482.181 kb on - strand at 482.181 kb on - strand at 482.181 kb on - strand at 482.181 kb on - strand at 482.181 kb on - strand at 482.181 kb on - strand at 482.181 kb on - strand at 482.234 kb on + strand at 482.235 kb on - strand at 482.235 kb on - strand at 482.235 kb on - strand at 482.235 kb on - strand at 482.235 kb on - strand at 482.235 kb on - strand at 482.235 kb on - strand at 482.254 kb on + strand at 482.255 kb on - strand at 482.255 kb on - strand at 482.255 kb on - strand at 482.255 kb on - strand at 482.255 kb on - strand at 482.318 kb on - strand, within LRK55_RS02200 at 482.552 kb on + strand at 482.552 kb on + strand at 482.621 kb on + strand at 482.649 kb on - strand at 483.084 kb on - strand, within LRK55_RS02205 at 483.084 kb on - strand, within LRK55_RS02205
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 479,875 + LRK55_RS02190 0.59 -1.3 479,876 - LRK55_RS02190 0.59 +0.7 479,876 - LRK55_RS02190 0.59 +0.8 479,876 - LRK55_RS02190 0.59 +0.1 479,876 - LRK55_RS02190 0.59 +0.4 479,876 - LRK55_RS02190 0.59 +0.5 479,933 - LRK55_RS02190 0.62 -0.2 479,953 - LRK55_RS02190 0.63 -2.3 480,052 + LRK55_RS02190 0.68 -1.8 480,052 + LRK55_RS02190 0.68 -0.2 480,052 + LRK55_RS02190 0.68 -0.0 480,052 + LRK55_RS02190 0.68 -0.3 480,052 + LRK55_RS02190 0.68 -0.6 480,052 + LRK55_RS02190 0.68 -0.7 480,052 + LRK55_RS02190 0.68 -0.2 480,052 + LRK55_RS02190 0.68 -2.9 480,053 - LRK55_RS02190 0.68 +0.9 480,053 - LRK55_RS02190 0.68 +0.5 480,053 - LRK55_RS02190 0.68 -0.5 480,053 - LRK55_RS02190 0.68 +1.5 480,053 - LRK55_RS02190 0.68 -2.0 480,053 - LRK55_RS02190 0.68 +0.7 480,053 - LRK55_RS02190 0.68 -1.1 480,053 - LRK55_RS02190 0.68 +0.8 480,055 + LRK55_RS02190 0.68 +0.3 480,055 + LRK55_RS02190 0.68 -1.0 480,055 + LRK55_RS02190 0.68 +0.4 480,055 + LRK55_RS02190 0.68 +0.4 480,055 + LRK55_RS02190 0.68 -1.0 480,055 + LRK55_RS02190 0.68 +0.3 480,055 + LRK55_RS02190 0.68 -1.5 480,055 + LRK55_RS02190 0.68 +0.3 480,055 + LRK55_RS02190 0.68 -1.6 480,055 + LRK55_RS02190 0.68 +0.7 480,055 + LRK55_RS02190 0.68 +1.0 480,055 + LRK55_RS02190 0.68 -0.6 480,056 - LRK55_RS02190 0.68 -1.0 480,056 - LRK55_RS02190 0.68 -0.4 480,056 - LRK55_RS02190 0.68 -1.1 480,056 - LRK55_RS02190 0.68 -1.5 480,056 - LRK55_RS02190 0.68 +0.4 480,056 - LRK55_RS02190 0.68 -0.5 480,056 - LRK55_RS02190 0.68 -0.2 480,056 - LRK55_RS02190 0.68 -2.5 480,166 + LRK55_RS02190 0.73 +0.3 480,166 + LRK55_RS02190 0.73 -0.3 480,166 + LRK55_RS02190 0.73 -0.9 480,166 + LRK55_RS02190 0.73 -0.2 480,166 + LRK55_RS02190 0.73 -2.6 480,166 + LRK55_RS02190 0.73 -1.0 480,166 + LRK55_RS02190 0.73 -0.1 480,166 + LRK55_RS02190 0.73 -0.8 480,167 - LRK55_RS02190 0.73 +0.5 480,167 - LRK55_RS02190 0.73 +0.6 480,167 - LRK55_RS02190 0.73 -1.0 480,167 - LRK55_RS02190 0.73 +0.1 480,167 - LRK55_RS02190 0.73 +0.0 480,167 - LRK55_RS02190 0.73 -0.6 480,167 - LRK55_RS02190 0.73 -1.0 480,346 + LRK55_RS02190 0.82 +1.4 480,347 - LRK55_RS02190 0.82 -0.5 480,554 - +0.5 480,554 - -0.0 480,554 - +0.0 480,554 - +0.1 480,580 + -1.0 480,637 + +0.7 480,637 + -0.8 480,637 + -0.1 480,637 + -3.2 480,638 - -1.5 480,638 - +0.7 480,638 - -1.2 480,638 - +0.5 480,724 + -0.7 480,724 + +0.4 480,724 + +0.2 480,725 - -0.2 480,725 - +0.4 480,725 - -0.5 481,459 - LRK55_RS02195 0.49 -0.8 482,078 + -1.5 482,079 - -2.5 482,079 - -2.3 482,079 - -0.6 482,097 - -0.5 482,097 - -2.0 482,134 - -3.1 482,134 - -0.7 482,134 - -3.6 482,134 - -1.7 482,134 - -0.7 482,136 - -1.0 482,136 - -1.3 482,136 - -1.0 482,149 + -2.3 482,150 - -0.0 482,174 + -3.3 482,174 + -0.5 482,174 + -2.0 482,174 + -0.9 482,174 + -0.8 482,175 - +0.2 482,175 - +0.0 482,175 - -0.1 482,175 - +0.4 482,175 - +0.5 482,180 + -2.3 482,180 + -1.0 482,180 + -2.5 482,180 + -2.0 482,180 + -1.2 482,180 + -1.0 482,180 + -2.9 482,180 + -0.7 482,180 + +0.5 482,180 + -2.0 482,180 + -0.8 482,180 + -2.3 482,180 + -0.4 482,181 - +0.8 482,181 - +0.6 482,181 - -0.3 482,181 - +1.2 482,181 - -1.0 482,181 - -1.0 482,181 - +0.5 482,181 - +0.5 482,181 - -0.3 482,234 + +1.0 482,235 - +0.7 482,235 - +0.1 482,235 - +3.0 482,235 - +0.0 482,235 - +0.3 482,235 - -0.7 482,235 - -0.4 482,254 + -1.7 482,255 - -2.3 482,255 - -0.9 482,255 - +0.5 482,255 - -1.8 482,255 - -1.9 482,318 - LRK55_RS02200 0.31 -1.6 482,552 + -0.5 482,552 + -0.9 482,621 + +2.0 482,649 - -1.0 483,084 - LRK55_RS02205 0.51 -1.0 483,084 - LRK55_RS02205 0.51 +0.5
Or see this region's nucleotide sequence