Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS00120 and LRK55_RS00125 are separated by 39 nucleotides LRK55_RS00125 and LRK55_RS00130 are separated by 26 nucleotides
LRK55_RS00120: LRK55_RS00120 - excinuclease ABC subunit UvrC, at 19,504 to 21,330
_RS00120
LRK55_RS00125: LRK55_RS00125 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 21,370 to 22,149
_RS00125
LRK55_RS00130: LRK55_RS00130 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 22,176 to 23,486
_RS00130
Position (kb) 21
22
23 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 20.408 kb on + strand, within LRK55_RS00120 at 20.408 kb on + strand, within LRK55_RS00120 at 20.408 kb on + strand, within LRK55_RS00120 at 20.408 kb on + strand, within LRK55_RS00120 at 20.408 kb on + strand, within LRK55_RS00120 at 20.408 kb on + strand, within LRK55_RS00120 at 20.408 kb on + strand, within LRK55_RS00120 at 20.409 kb on - strand, within LRK55_RS00120 at 20.409 kb on - strand, within LRK55_RS00120 at 20.409 kb on - strand, within LRK55_RS00120 at 20.409 kb on - strand, within LRK55_RS00120 at 20.411 kb on + strand, within LRK55_RS00120 at 20.411 kb on + strand, within LRK55_RS00120 at 20.411 kb on + strand, within LRK55_RS00120 at 20.411 kb on + strand, within LRK55_RS00120 at 20.435 kb on - strand, within LRK55_RS00120 at 20.810 kb on + strand, within LRK55_RS00120 at 20.843 kb on + strand, within LRK55_RS00120 at 20.844 kb on - strand, within LRK55_RS00120 at 20.844 kb on - strand, within LRK55_RS00120 at 20.909 kb on + strand, within LRK55_RS00120 at 20.933 kb on + strand, within LRK55_RS00120 at 20.934 kb on - strand, within LRK55_RS00120 at 20.934 kb on - strand, within LRK55_RS00120 at 20.934 kb on - strand, within LRK55_RS00120 at 21.002 kb on + strand, within LRK55_RS00120 at 21.002 kb on + strand, within LRK55_RS00120 at 21.002 kb on + strand, within LRK55_RS00120 at 21.002 kb on + strand, within LRK55_RS00120 at 21.002 kb on + strand, within LRK55_RS00120 at 21.003 kb on - strand, within LRK55_RS00120 at 21.003 kb on - strand, within LRK55_RS00120 at 21.003 kb on - strand, within LRK55_RS00120 at 21.003 kb on - strand, within LRK55_RS00120 at 21.003 kb on - strand, within LRK55_RS00120 at 21.008 kb on + strand, within LRK55_RS00120 at 21.008 kb on + strand, within LRK55_RS00120 at 21.008 kb on + strand, within LRK55_RS00120 at 21.008 kb on + strand, within LRK55_RS00120 at 21.008 kb on + strand, within LRK55_RS00120 at 21.008 kb on + strand, within LRK55_RS00120 at 21.008 kb on + strand, within LRK55_RS00120 at 21.008 kb on + strand, within LRK55_RS00120 at 21.008 kb on + strand, within LRK55_RS00120 at 21.009 kb on - strand, within LRK55_RS00120 at 21.009 kb on - strand, within LRK55_RS00120 at 21.009 kb on - strand, within LRK55_RS00120 at 21.009 kb on - strand, within LRK55_RS00120 at 21.009 kb on - strand, within LRK55_RS00120 at 21.009 kb on - strand, within LRK55_RS00120 at 21.009 kb on - strand, within LRK55_RS00120 at 21.009 kb on - strand, within LRK55_RS00120 at 21.009 kb on - strand, within LRK55_RS00120 at 21.009 kb on - strand, within LRK55_RS00120 at 21.009 kb on - strand, within LRK55_RS00120 at 21.014 kb on + strand, within LRK55_RS00120 at 21.015 kb on - strand, within LRK55_RS00120 at 21.044 kb on + strand, within LRK55_RS00120 at 21.044 kb on + strand, within LRK55_RS00120 at 21.044 kb on + strand, within LRK55_RS00120 at 21.045 kb on - strand, within LRK55_RS00120 at 21.045 kb on - strand, within LRK55_RS00120 at 21.045 kb on - strand, within LRK55_RS00120 at 21.182 kb on + strand at 21.183 kb on - strand at 21.183 kb on - strand at 21.183 kb on - strand at 21.224 kb on + strand at 21.224 kb on + strand at 21.225 kb on - strand at 21.225 kb on - strand at 21.225 kb on - strand at 21.225 kb on - strand at 21.257 kb on + strand at 21.341 kb on + strand at 21.342 kb on - strand at 22.156 kb on - strand at 22.156 kb on - strand at 22.156 kb on - strand at 22.183 kb on - strand at 22.488 kb on - strand, within LRK55_RS00130 at 22.488 kb on - strand, within LRK55_RS00130 at 22.891 kb on + strand, within LRK55_RS00130 at 22.892 kb on - strand, within LRK55_RS00130 at 22.892 kb on - strand, within LRK55_RS00130 at 22.892 kb on - strand, within LRK55_RS00130 at 22.939 kb on + strand, within LRK55_RS00130 at 22.940 kb on - strand, within LRK55_RS00130 at 22.940 kb on - strand, within LRK55_RS00130 at 22.996 kb on + strand, within LRK55_RS00130
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 20,408 + LRK55_RS00120 0.49 -1.3 20,408 + LRK55_RS00120 0.49 -2.9 20,408 + LRK55_RS00120 0.49 -1.7 20,408 + LRK55_RS00120 0.49 -1.8 20,408 + LRK55_RS00120 0.49 -3.4 20,408 + LRK55_RS00120 0.49 -2.3 20,408 + LRK55_RS00120 0.49 +0.7 20,409 - LRK55_RS00120 0.50 +0.1 20,409 - LRK55_RS00120 0.50 -1.9 20,409 - LRK55_RS00120 0.50 -2.2 20,409 - LRK55_RS00120 0.50 -2.5 20,411 + LRK55_RS00120 0.50 -2.3 20,411 + LRK55_RS00120 0.50 -2.2 20,411 + LRK55_RS00120 0.50 +0.7 20,411 + LRK55_RS00120 0.50 -0.3 20,435 - LRK55_RS00120 0.51 -1.7 20,810 + LRK55_RS00120 0.71 -0.9 20,843 + LRK55_RS00120 0.73 -1.3 20,844 - LRK55_RS00120 0.73 -2.2 20,844 - LRK55_RS00120 0.73 -2.2 20,909 + LRK55_RS00120 0.77 -1.7 20,933 + LRK55_RS00120 0.78 -1.3 20,934 - LRK55_RS00120 0.78 -1.9 20,934 - LRK55_RS00120 0.78 -1.9 20,934 - LRK55_RS00120 0.78 -1.3 21,002 + LRK55_RS00120 0.82 -3.0 21,002 + LRK55_RS00120 0.82 -3.3 21,002 + LRK55_RS00120 0.82 -3.7 21,002 + LRK55_RS00120 0.82 -1.3 21,002 + LRK55_RS00120 0.82 -3.2 21,003 - LRK55_RS00120 0.82 -2.3 21,003 - LRK55_RS00120 0.82 -3.3 21,003 - LRK55_RS00120 0.82 -0.9 21,003 - LRK55_RS00120 0.82 -2.9 21,003 - LRK55_RS00120 0.82 -1.3 21,008 + LRK55_RS00120 0.82 -2.2 21,008 + LRK55_RS00120 0.82 -1.9 21,008 + LRK55_RS00120 0.82 -1.8 21,008 + LRK55_RS00120 0.82 -2.2 21,008 + LRK55_RS00120 0.82 -2.5 21,008 + LRK55_RS00120 0.82 -2.3 21,008 + LRK55_RS00120 0.82 -2.7 21,008 + LRK55_RS00120 0.82 -1.7 21,008 + LRK55_RS00120 0.82 -1.3 21,009 - LRK55_RS00120 0.82 -0.9 21,009 - LRK55_RS00120 0.82 -1.7 21,009 - LRK55_RS00120 0.82 -1.9 21,009 - LRK55_RS00120 0.82 -1.9 21,009 - LRK55_RS00120 0.82 -1.3 21,009 - LRK55_RS00120 0.82 -2.5 21,009 - LRK55_RS00120 0.82 -1.7 21,009 - LRK55_RS00120 0.82 -2.3 21,009 - LRK55_RS00120 0.82 -2.7 21,009 - LRK55_RS00120 0.82 -2.5 21,009 - LRK55_RS00120 0.82 -0.3 21,014 + LRK55_RS00120 0.83 -1.9 21,015 - LRK55_RS00120 0.83 -2.3 21,044 + LRK55_RS00120 0.84 -2.2 21,044 + LRK55_RS00120 0.84 -1.3 21,044 + LRK55_RS00120 0.84 +0.7 21,045 - LRK55_RS00120 0.84 -3.7 21,045 - LRK55_RS00120 0.84 -1.9 21,045 - LRK55_RS00120 0.84 -1.9 21,182 + -3.3 21,183 - -3.2 21,183 - -2.8 21,183 - -1.9 21,224 + -0.7 21,224 + -1.7 21,225 - -1.7 21,225 - -2.5 21,225 - -1.5 21,225 - -0.3 21,257 + -2.9 21,341 + +0.8 21,342 - -2.7 22,156 - +0.7 22,156 - -0.2 22,156 - +0.9 22,183 - +2.1 22,488 - LRK55_RS00130 0.24 -3.3 22,488 - LRK55_RS00130 0.24 -1.3 22,891 + LRK55_RS00130 0.55 -0.9 22,892 - LRK55_RS00130 0.55 -0.3 22,892 - LRK55_RS00130 0.55 -2.8 22,892 - LRK55_RS00130 0.55 -1.7 22,939 + LRK55_RS00130 0.58 -1.3 22,940 - LRK55_RS00130 0.58 -2.3 22,940 - LRK55_RS00130 0.58 -3.0 22,996 + LRK55_RS00130 0.63 -1.7
Or see this region's nucleotide sequence