Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS06935

Experiment: Anaerobic no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic no stress control
1,494,038	-		ABCV34_RS06925	0.89	-2.8
1,494,038	-		ABCV34_RS06925	0.89	-2.6
1,494,038	-		ABCV34_RS06925	0.89	-1.0
1,494,038	-		ABCV34_RS06925	0.89	-1.5
1,494,038	-		ABCV34_RS06925	0.89	-0.6
1,494,038	-		ABCV34_RS06925	0.89	-1.7
1,494,038	-		ABCV34_RS06925	0.89	-1.8
1,494,038	-		ABCV34_RS06925	0.89	-2.0
1,494,060	-				-1.6
1,494,060	-				-2.5
1,494,071	-				-1.9
1,494,078	+				-1.4
1,494,079	-				-1.0
1,494,081	+				-1.4
1,494,081	+				-1.3
1,494,082	-				-2.1
1,494,082	-				-0.6
1,494,082	-				-1.9
1,494,085	+				-1.9
1,494,085	+				-1.3
1,494,085	+				-1.2
1,494,085	+				-1.2
1,494,086	-				-1.8
1,494,086	-				-1.6
1,494,086	-				-1.6
1,494,089	+				-1.5
1,494,089	+				-0.3
1,494,089	+				-0.3
1,494,089	+				-0.8
1,494,089	+				-1.0
1,494,089	+				-1.9
1,494,089	+				-1.6
1,494,089	+				-1.7
1,494,089	+				-0.8
1,494,089	+				-0.5
1,494,090	-				-0.5
1,494,090	-				-1.0
1,494,090	-				-1.2
1,494,090	-				-0.7
1,494,090	-				-0.8
1,494,142	+				-1.5
1,494,196	+				-3.3
1,494,196	+				-2.1
1,494,196	+				-1.4
1,494,196	+				-1.9
1,494,196	+				-0.6
1,494,197	-				-1.6
1,494,197	-				-0.8
1,494,197	-				-2.6
1,494,197	-				-1.0
1,494,197	-				-0.8
1,494,197	-				-1.6
1,494,197	-				-1.2
1,494,320	+		ABCV34_RS06930	0.20	-1.0
1,494,320	+		ABCV34_RS06930	0.20	-1.4
1,494,320	+		ABCV34_RS06930	0.20	-1.4
1,494,320	+		ABCV34_RS06930	0.20	-1.1
1,494,321	-		ABCV34_RS06930	0.20	-0.5
1,494,321	-		ABCV34_RS06930	0.20	-1.0
1,494,401	+		ABCV34_RS06930	0.29	-0.7
1,494,401	+		ABCV34_RS06930	0.29	-1.2
1,494,402	-		ABCV34_RS06930	0.29	-0.9
1,494,402	-		ABCV34_RS06930	0.29	-2.0
1,494,434	+		ABCV34_RS06930	0.33	-1.1
1,494,434	+		ABCV34_RS06930	0.33	+1.6
1,494,523	+		ABCV34_RS06930	0.44	-2.5
1,494,523	+		ABCV34_RS06930	0.44	-1.1
1,494,523	+		ABCV34_RS06930	0.44	-1.3
1,494,524	-		ABCV34_RS06930	0.44	-1.6
1,494,634	+		ABCV34_RS06930	0.57	-0.6
1,494,635	-		ABCV34_RS06930	0.58	-2.4
1,494,714	+		ABCV34_RS06930	0.67	-2.0
1,494,715	-		ABCV34_RS06930	0.67	-1.3
1,494,715	-		ABCV34_RS06930	0.67	-0.6
1,494,715	-		ABCV34_RS06930	0.67	+0.2
1,494,715	-		ABCV34_RS06930	0.67	-1.3
1,494,715	-		ABCV34_RS06930	0.67	-0.0
1,494,760	+		ABCV34_RS06930	0.73	-0.7
1,494,760	+		ABCV34_RS06930	0.73	-1.7
1,494,760	+		ABCV34_RS06930	0.73	-2.7
1,494,760	+		ABCV34_RS06930	0.73	-1.5
1,494,761	-		ABCV34_RS06930	0.73	-1.9
1,494,761	-		ABCV34_RS06930	0.73	-1.3
1,494,761	-		ABCV34_RS06930	0.73	-0.3
1,494,761	-		ABCV34_RS06930	0.73	-1.3
1,494,874	+		ABCV34_RS06930	0.86	-1.0
1,494,874	+		ABCV34_RS06930	0.86	-2.1
1,494,874	+		ABCV34_RS06930	0.86	-1.1
1,494,874	+		ABCV34_RS06930	0.86	-1.2
1,494,874	+		ABCV34_RS06930	0.86	+0.6
1,494,874	+		ABCV34_RS06930	0.86	-1.3
1,494,875	-		ABCV34_RS06930	0.86	-1.8
1,494,875	-		ABCV34_RS06930	0.86	-1.2
1,494,875	-		ABCV34_RS06930	0.86	-1.5
1,495,022	+				-1.6
1,495,022	+				-0.6
1,495,023	-				-0.5
1,495,023	-				-0.9
1,495,023	-				-1.5
1,495,023	-				-0.3
1,495,023	-				-2.2
1,495,150	-				-0.2
1,495,150	-				-0.8
1,495,233	+		ABCV34_RS06935	0.14	-2.6
1,495,233	+		ABCV34_RS06935	0.14	-1.2
1,495,233	+		ABCV34_RS06935	0.14	-0.4
1,495,233	+		ABCV34_RS06935	0.14	-2.6
1,495,233	+		ABCV34_RS06935	0.14	-1.3
1,495,233	+		ABCV34_RS06935	0.14	-1.3
1,495,233	+		ABCV34_RS06935	0.14	-1.4
1,495,234	-		ABCV34_RS06935	0.14	-2.2
1,495,234	-		ABCV34_RS06935	0.14	-1.9
1,495,234	-		ABCV34_RS06935	0.14	-0.7
1,495,234	-		ABCV34_RS06935	0.14	-0.4
1,495,234	-		ABCV34_RS06935	0.14	-1.2
1,495,234	-		ABCV34_RS06935	0.14	-1.3
1,495,234	-		ABCV34_RS06935	0.14	-2.5
1,495,357	-		ABCV34_RS06935	0.21	-0.9
1,495,566	+		ABCV34_RS06935	0.33	-1.4
1,495,566	+		ABCV34_RS06935	0.33	-2.1
1,495,566	+		ABCV34_RS06935	0.33	-1.3
1,495,566	+		ABCV34_RS06935	0.33	-0.5
1,495,566	+		ABCV34_RS06935	0.33	-2.8
1,495,566	+		ABCV34_RS06935	0.33	-1.5
1,495,566	+		ABCV34_RS06935	0.33	-1.5
1,495,566	+		ABCV34_RS06935	0.33	-1.7
1,495,567	-		ABCV34_RS06935	0.33	-1.0
1,495,567	-		ABCV34_RS06935	0.33	-0.7
1,495,567	-		ABCV34_RS06935	0.33	-2.3
1,495,567	-		ABCV34_RS06935	0.33	-1.8
1,495,611	+		ABCV34_RS06935	0.36	-1.0
1,495,698	-		ABCV34_RS06935	0.41	-0.8
1,495,855	-		ABCV34_RS06935	0.50	-2.0
1,495,962	+		ABCV34_RS06935	0.56	-1.2
1,496,019	+		ABCV34_RS06935	0.60	-1.6
1,496,050	-		ABCV34_RS06935	0.62	-1.7
1,496,050	-		ABCV34_RS06935	0.62	-1.3
1,496,062	+		ABCV34_RS06935	0.62	-1.4
1,496,205	+		ABCV34_RS06935	0.71	-2.5
1,496,206	-		ABCV34_RS06935	0.71	+0.8
1,496,206	-		ABCV34_RS06935	0.71	-1.4
1,496,206	-		ABCV34_RS06935	0.71	-1.0
1,496,206	-		ABCV34_RS06935	0.71	-0.9
1,496,217	+		ABCV34_RS06935	0.71	-1.1
1,496,217	+		ABCV34_RS06935	0.71	-0.5
1,496,217	+		ABCV34_RS06935	0.71	-1.7
1,496,349	+		ABCV34_RS06935	0.79	-1.6
1,496,349	+		ABCV34_RS06935	0.79	-0.8
1,496,349	+		ABCV34_RS06935	0.79	-0.4
1,496,349	+		ABCV34_RS06935	0.79	-1.1
1,496,349	+		ABCV34_RS06935	0.79	-1.2
1,496,349	+		ABCV34_RS06935	0.79	-0.8
1,496,350	-		ABCV34_RS06935	0.79	-1.8
1,496,350	-		ABCV34_RS06935	0.79	-1.9
1,496,478	+		ABCV34_RS06935	0.87	-1.2
1,496,478	+		ABCV34_RS06935	0.87	-1.8
1,496,479	-		ABCV34_RS06935	0.87	-1.7
1,496,479	-		ABCV34_RS06935	0.87	-1.2
1,496,479	-		ABCV34_RS06935	0.87	-2.2
1,496,479	-		ABCV34_RS06935	0.87	-0.5
1,496,523	-		ABCV34_RS06935	0.89	-1.5
1,496,583	+				-1.6
1,496,584	-				-1.9
1,496,584	-				-1.8
1,496,584	-				-2.1
1,496,625	+				-0.3
1,496,626	-				-0.6
1,496,670	+				-1.5
1,496,670	+				-1.2
1,496,670	+				-1.3
1,496,670	+				-2.0
1,496,670	+				-1.5
1,496,670	+				-1.2
1,496,670	+				-1.1
1,496,670	+				-1.9
1,496,670	+				-0.4
1,496,671	-				-1.8
1,496,671	-				-1.2
1,496,671	-				-0.9
1,496,671	-				-1.0
1,496,671	-				-1.2
1,496,671	-				-1.2
1,496,671	-				-2.3
1,496,672	+				-1.3
1,496,672	+				-1.2
1,496,672	+				-1.7
1,496,672	+				-0.9
1,496,672	+				-1.5
1,496,672	+				-0.7
1,496,672	+				-1.4
1,496,673	-				-1.1
1,496,673	-				-1.4
1,496,673	-				-2.2
1,496,673	-				-1.0
1,496,746	+				-0.8
1,496,746	+				-1.3
1,496,783	+		ABCV34_RS06940	0.12	-1.0
1,496,783	+		ABCV34_RS06940	0.12	-0.7
1,496,783	+		ABCV34_RS06940	0.12	-0.9
1,496,783	+		ABCV34_RS06940	0.12	-1.6
1,496,783	+		ABCV34_RS06940	0.12	+0.4
1,496,783	+		ABCV34_RS06940	0.12	-1.3
1,496,783	+		ABCV34_RS06940	0.12	-1.2
1,496,783	+		ABCV34_RS06940	0.12	-0.6
1,496,783	+		ABCV34_RS06940	0.12	-0.3
1,496,783	+		ABCV34_RS06940	0.12	-1.3
1,496,783	+		ABCV34_RS06940	0.12	-2.0
1,496,784	-		ABCV34_RS06940	0.12	-0.8
1,496,784	-		ABCV34_RS06940	0.12	-1.1
1,496,784	-		ABCV34_RS06940	0.12	-1.2
1,496,882	+		ABCV34_RS06940	0.41	-2.2
1,496,882	+		ABCV34_RS06940	0.41	-0.7
1,496,882	+		ABCV34_RS06940	0.41	-1.0
1,496,882	+		ABCV34_RS06940	0.41	-1.0
1,496,882	+		ABCV34_RS06940	0.41	-1.7
1,496,882	+		ABCV34_RS06940	0.41	-1.2
1,496,883	-		ABCV34_RS06940	0.41	-1.7
1,496,883	-		ABCV34_RS06940	0.41	-1.4
1,496,883	-		ABCV34_RS06940	0.41	-1.6
1,496,883	-		ABCV34_RS06940	0.41	-1.9
1,496,883	-		ABCV34_RS06940	0.41	-0.7
1,496,930	+		ABCV34_RS06940	0.54	-0.7
1,496,931	-		ABCV34_RS06940	0.55	-0.0
1,496,996	+		ABCV34_RS06940	0.73	-1.2
1,496,997	-		ABCV34_RS06940	0.74	-1.3
1,497,052	+		ABCV34_RS06940	0.89	-1.3
1,497,052	+		ABCV34_RS06940	0.89	-1.4
1,497,348	+		ABCV34_RS06945	0.33	-0.9
1,497,349	-		ABCV34_RS06945	0.33	-1.3
1,497,428	+		ABCV34_RS06945	0.43	-1.5
1,497,428	+		ABCV34_RS06945	0.43	-1.4
1,497,429	-		ABCV34_RS06945	0.43	-0.4
1,497,429	-		ABCV34_RS06945	0.43	-1.4
1,497,429	-		ABCV34_RS06945	0.43	-1.5
1,497,429	-		ABCV34_RS06945	0.43	-1.3
1,497,547	+		ABCV34_RS06945	0.58	-1.3
1,497,548	-		ABCV34_RS06945	0.58	-1.4
1,497,643	+		ABCV34_RS06945	0.70	-1.1
1,497,643	+		ABCV34_RS06945	0.70	-1.6
1,497,644	-		ABCV34_RS06945	0.70	-1.1
1,497,644	-		ABCV34_RS06945	0.70	-0.6
1,497,683	-		ABCV34_RS06945	0.75	-1.5