Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS19460

Experiment: R2A_PIPES with Cadmium chloride 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS19450 and LRK55_RS19455 are separated by 240 nucleotidesLRK55_RS19455 and LRK55_RS19460 are separated by 29 nucleotidesLRK55_RS19460 and LRK55_RS19465 are separated by 75 nucleotides LRK55_RS19450: LRK55_RS19450 - SLOG family protein, at 231,021 to 231,773 _RS19450 LRK55_RS19455: LRK55_RS19455 - hypothetical protein, at 232,014 to 232,391 _RS19455 LRK55_RS19460: LRK55_RS19460 - hypothetical protein, at 232,421 to 232,669 _RS19460 LRK55_RS19465: LRK55_RS19465 - hypothetical protein, at 232,745 to 233,587 _RS19465 Position (kb) 232 233Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 231.459 kb on + strand, within LRK55_RS19450at 231.460 kb on - strand, within LRK55_RS19450at 231.460 kb on - strand, within LRK55_RS19450at 231.460 kb on - strand, within LRK55_RS19450at 231.821 kb on + strandat 231.821 kb on + strandat 231.821 kb on + strandat 231.821 kb on + strandat 231.821 kb on + strandat 231.822 kb on - strandat 231.822 kb on - strandat 231.893 kb on + strandat 231.893 kb on + strandat 231.893 kb on + strandat 231.893 kb on + strandat 231.893 kb on + strandat 231.893 kb on + strandat 231.893 kb on + strandat 231.894 kb on - strandat 231.894 kb on - strandat 231.894 kb on - strandat 231.894 kb on - strandat 231.894 kb on - strandat 231.895 kb on + strandat 231.895 kb on + strandat 231.896 kb on - strandat 232.065 kb on + strand, within LRK55_RS19455at 232.065 kb on + strand, within LRK55_RS19455at 232.065 kb on + strand, within LRK55_RS19455at 232.065 kb on + strand, within LRK55_RS19455at 232.065 kb on + strand, within LRK55_RS19455at 232.065 kb on + strand, within LRK55_RS19455at 232.065 kb on + strand, within LRK55_RS19455at 232.066 kb on - strand, within LRK55_RS19455at 232.066 kb on - strand, within LRK55_RS19455at 232.066 kb on - strand, within LRK55_RS19455at 232.066 kb on - strand, within LRK55_RS19455at 232.066 kb on - strand, within LRK55_RS19455at 232.128 kb on + strand, within LRK55_RS19455at 232.129 kb on - strand, within LRK55_RS19455at 232.158 kb on + strand, within LRK55_RS19455at 232.158 kb on + strand, within LRK55_RS19455at 232.158 kb on + strand, within LRK55_RS19455at 232.159 kb on - strand, within LRK55_RS19455at 232.159 kb on - strand, within LRK55_RS19455at 232.186 kb on - strand, within LRK55_RS19455at 232.186 kb on - strand, within LRK55_RS19455at 232.251 kb on + strand, within LRK55_RS19455at 232.251 kb on + strand, within LRK55_RS19455at 232.251 kb on + strand, within LRK55_RS19455at 232.251 kb on + strand, within LRK55_RS19455at 232.252 kb on - strand, within LRK55_RS19455at 232.252 kb on - strand, within LRK55_RS19455at 232.313 kb on + strand, within LRK55_RS19455at 232.313 kb on + strand, within LRK55_RS19455at 232.368 kb on + strandat 232.368 kb on + strandat 232.369 kb on - strandat 232.389 kb on + strandat 232.389 kb on + strandat 232.389 kb on + strandat 232.427 kb on + strandat 232.428 kb on - strandat 232.586 kb on + strand, within LRK55_RS19460at 232.614 kb on + strand, within LRK55_RS19460at 232.701 kb on - strandat 232.790 kb on + strandat 232.790 kb on + strandat 232.791 kb on - strandat 232.820 kb on - strandat 232.853 kb on + strand, within LRK55_RS19465at 232.853 kb on + strand, within LRK55_RS19465at 232.854 kb on - strand, within LRK55_RS19465at 232.854 kb on - strand, within LRK55_RS19465at 232.854 kb on - strand, within LRK55_RS19465at 232.854 kb on - strand, within LRK55_RS19465at 232.854 kb on - strand, within LRK55_RS19465at 233.096 kb on + strand, within LRK55_RS19465at 233.097 kb on - strand, within LRK55_RS19465at 233.097 kb on - strand, within LRK55_RS19465at 233.133 kb on + strand, within LRK55_RS19465at 233.274 kb on + strand, within LRK55_RS19465at 233.274 kb on + strand, within LRK55_RS19465at 233.585 kb on + strandat 233.586 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 64 uM
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231,459 + LRK55_RS19450 0.58 -0.6
231,460 - LRK55_RS19450 0.58 +1.3
231,460 - LRK55_RS19450 0.58 -0.5
231,460 - LRK55_RS19450 0.58 -0.7
231,821 + -0.4
231,821 + -2.3
231,821 + +0.9
231,821 + +0.5
231,821 + -1.9
231,822 - +0.4
231,822 - +1.2
231,893 + +0.1
231,893 + -0.7
231,893 + -1.7
231,893 + -0.2
231,893 + -0.9
231,893 + +1.5
231,893 + +0.8
231,894 - -0.6
231,894 - -0.0
231,894 - +2.6
231,894 - -0.2
231,894 - +0.1
231,895 + +0.3
231,895 + +1.6
231,896 - +0.6
232,065 + LRK55_RS19455 0.13 -1.4
232,065 + LRK55_RS19455 0.13 -1.6
232,065 + LRK55_RS19455 0.13 -1.2
232,065 + LRK55_RS19455 0.13 -1.4
232,065 + LRK55_RS19455 0.13 -3.5
232,065 + LRK55_RS19455 0.13 -1.7
232,065 + LRK55_RS19455 0.13 -0.5
232,066 - LRK55_RS19455 0.14 -0.5
232,066 - LRK55_RS19455 0.14 +1.1
232,066 - LRK55_RS19455 0.14 -1.1
232,066 - LRK55_RS19455 0.14 +1.3
232,066 - LRK55_RS19455 0.14 +0.8
232,128 + LRK55_RS19455 0.30 -1.0
232,129 - LRK55_RS19455 0.30 -1.9
232,158 + LRK55_RS19455 0.38 -0.7
232,158 + LRK55_RS19455 0.38 -0.9
232,158 + LRK55_RS19455 0.38 +1.2
232,159 - LRK55_RS19455 0.38 -0.1
232,159 - LRK55_RS19455 0.38 -1.4
232,186 - LRK55_RS19455 0.46 +0.0
232,186 - LRK55_RS19455 0.46 +0.6
232,251 + LRK55_RS19455 0.63 +0.3
232,251 + LRK55_RS19455 0.63 -3.6
232,251 + LRK55_RS19455 0.63 +1.2
232,251 + LRK55_RS19455 0.63 -0.7
232,252 - LRK55_RS19455 0.63 -0.3
232,252 - LRK55_RS19455 0.63 -3.9
232,313 + LRK55_RS19455 0.79 -1.8
232,313 + LRK55_RS19455 0.79 +1.9
232,368 + -0.1
232,368 + -1.1
232,369 - +0.2
232,389 + -0.6
232,389 + -3.6
232,389 + +0.3
232,427 + -1.7
232,428 - +1.0
232,586 + LRK55_RS19460 0.66 -0.1
232,614 + LRK55_RS19460 0.78 +0.9
232,701 - -1.2
232,790 + +1.1
232,790 + -0.8
232,791 - -1.2
232,820 - +0.6
232,853 + LRK55_RS19465 0.13 -2.6
232,853 + LRK55_RS19465 0.13 -2.3
232,854 - LRK55_RS19465 0.13 -0.6
232,854 - LRK55_RS19465 0.13 -1.0
232,854 - LRK55_RS19465 0.13 -0.9
232,854 - LRK55_RS19465 0.13 +0.3
232,854 - LRK55_RS19465 0.13 +1.2
233,096 + LRK55_RS19465 0.42 -0.2
233,097 - LRK55_RS19465 0.42 -0.3
233,097 - LRK55_RS19465 0.42 -0.1
233,133 + LRK55_RS19465 0.46 -3.4
233,274 + LRK55_RS19465 0.63 +0.1
233,274 + LRK55_RS19465 0.63 -2.3
233,585 + -1.1
233,586 - -2.7

Or see this region's nucleotide sequence