Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS17435

Experiment: R2A_PIPES with Cadmium chloride 64 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Cadmium chloride 64 uM
3,787,126	+		LRK55_RS17430	0.70	+0.4
3,787,126	+		LRK55_RS17430	0.70	+0.3
3,787,127	-		LRK55_RS17430	0.71	+0.6
3,787,127	-		LRK55_RS17430	0.71	-0.8
3,787,174	+		LRK55_RS17430	0.73	+0.1
3,787,174	+		LRK55_RS17430	0.73	+1.4
3,787,174	+		LRK55_RS17430	0.73	+1.8
3,787,175	-		LRK55_RS17430	0.73	-0.1
3,787,175	-		LRK55_RS17430	0.73	+0.2
3,787,175	-		LRK55_RS17430	0.73	+2.0
3,787,175	-		LRK55_RS17430	0.73	-0.8
3,787,175	-		LRK55_RS17430	0.73	+1.6
3,787,175	-		LRK55_RS17430	0.73	+1.1
3,787,175	-		LRK55_RS17430	0.73	+1.0
3,787,175	-		LRK55_RS17430	0.73	+1.5
3,787,315	+		LRK55_RS17430	0.79	-0.2
3,787,315	+		LRK55_RS17430	0.79	+0.0
3,787,315	+		LRK55_RS17430	0.79	+1.6
3,787,315	+		LRK55_RS17430	0.79	-1.1
3,787,316	-		LRK55_RS17430	0.79	-0.8
3,787,316	-		LRK55_RS17430	0.79	-0.0
3,787,402	+		LRK55_RS17430	0.83	+1.5
3,787,402	+		LRK55_RS17430	0.83	-2.0
3,787,403	-		LRK55_RS17430	0.83	+1.8
3,787,403	-		LRK55_RS17430	0.83	-0.5
3,787,403	-		LRK55_RS17430	0.83	+0.9
3,787,403	-		LRK55_RS17430	0.83	-2.1
3,787,403	-		LRK55_RS17430	0.83	+0.9
3,787,403	-		LRK55_RS17430	0.83	-0.8
3,787,417	+		LRK55_RS17430	0.83	-0.7
3,787,417	+		LRK55_RS17430	0.83	-0.3
3,787,417	+		LRK55_RS17430	0.83	+1.8
3,787,417	+		LRK55_RS17430	0.83	+1.2
3,787,417	+		LRK55_RS17430	0.83	-0.0
3,787,417	+		LRK55_RS17430	0.83	+1.2
3,787,417	+		LRK55_RS17430	0.83	+0.2
3,787,418	-		LRK55_RS17430	0.83	+1.3
3,787,418	-		LRK55_RS17430	0.83	+1.2
3,787,418	-		LRK55_RS17430	0.83	+0.1
3,787,418	-		LRK55_RS17430	0.83	+0.8
3,787,418	-		LRK55_RS17430	0.83	+0.1
3,787,418	-		LRK55_RS17430	0.83	+3.2
3,787,562	+		LRK55_RS17430	0.90	-0.4
3,787,563	-		LRK55_RS17430	0.90	+1.2
3,787,784	-				-1.7
3,787,784	-				+0.4
3,787,879	+		LRK55_RS17435	0.37	-3.0
3,787,879	+		LRK55_RS17435	0.37	+0.7
3,787,879	+		LRK55_RS17435	0.37	-1.2
3,787,879	+		LRK55_RS17435	0.37	+2.4
3,787,879	+		LRK55_RS17435	0.37	+0.2
3,787,879	+		LRK55_RS17435	0.37	+0.8
3,787,880	-		LRK55_RS17435	0.37	+1.7
3,787,880	-		LRK55_RS17435	0.37	-0.4
3,787,947	-		LRK55_RS17435	0.65	-0.5
3,787,947	-		LRK55_RS17435	0.65	+1.8
3,787,986	+		LRK55_RS17435	0.81	+0.5
3,788,053	+				-1.1
3,788,053	+				+1.0
3,788,053	+				+2.9
3,788,053	+				-0.2
3,788,053	+				-2.1
3,788,053	+				-0.5
3,788,053	+				-1.8
3,788,053	+				+2.5
3,788,054	-				+1.2
3,788,054	-				-0.5
3,788,054	-				+0.9
3,788,054	-				-0.3
3,788,054	-				+0.8
3,788,059	+				+0.9
3,788,059	+				-0.8
3,788,059	+				-1.4
3,788,059	+				-1.8
3,788,059	+				-1.1
3,788,059	+				+0.4
3,788,059	+				+2.1
3,788,059	+				+1.8
3,788,059	+				+0.5
3,788,060	-				-0.1
3,788,060	-				+0.2
3,788,060	-				-1.1
3,788,060	-				+1.8
3,788,060	-				+0.9
3,788,060	-				+1.4
3,788,060	-				+2.2
3,788,320	+		LRK55_RS17440	0.33	+0.8
3,788,320	+		LRK55_RS17440	0.33	+2.1
3,788,320	+		LRK55_RS17440	0.33	-2.0
3,788,320	+		LRK55_RS17440	0.33	-0.2
3,788,320	+		LRK55_RS17440	0.33	-0.1
3,788,320	+		LRK55_RS17440	0.33	+2.2
3,788,320	+		LRK55_RS17440	0.33	-0.8
3,788,320	+		LRK55_RS17440	0.33	-0.1
3,788,321	-		LRK55_RS17440	0.34	+1.0
3,788,321	-		LRK55_RS17440	0.34	-0.1
3,788,321	-		LRK55_RS17440	0.34	+0.9
3,788,428	+		LRK55_RS17440	0.45	+1.2
3,788,428	+		LRK55_RS17440	0.45	+0.2
3,788,523	+		LRK55_RS17440	0.56	+0.3
3,788,523	+		LRK55_RS17440	0.56	-1.0
3,788,523	+		LRK55_RS17440	0.56	-0.9
3,788,523	+		LRK55_RS17440	0.56	-2.1
3,788,523	+		LRK55_RS17440	0.56	-0.6
3,788,523	+		LRK55_RS17440	0.56	-0.4
3,788,524	-		LRK55_RS17440	0.56	+0.2
3,788,524	-		LRK55_RS17440	0.56	+0.8
3,788,524	-		LRK55_RS17440	0.56	+0.1
3,788,524	-		LRK55_RS17440	0.56	+2.3
3,788,524	-		LRK55_RS17440	0.56	-0.4
3,788,524	-		LRK55_RS17440	0.56	-2.0
3,788,524	-		LRK55_RS17440	0.56	+0.5
3,788,524	-		LRK55_RS17440	0.56	-0.1
3,788,524	-		LRK55_RS17440	0.56	-1.0
3,788,524	-		LRK55_RS17440	0.56	+0.9
3,788,524	-		LRK55_RS17440	0.56	+0.2
3,788,524	-		LRK55_RS17440	0.56	+0.9
3,788,575	+		LRK55_RS17440	0.61	+0.2
3,788,576	-		LRK55_RS17440	0.62	+0.5
3,788,664	+		LRK55_RS17440	0.71	-0.8
3,788,664	+		LRK55_RS17440	0.71	-1.4
3,788,664	+		LRK55_RS17440	0.71	-1.6
3,788,664	+		LRK55_RS17440	0.71	+0.2
3,788,664	+		LRK55_RS17440	0.71	+2.1
3,788,665	-		LRK55_RS17440	0.71	-0.2
3,788,704	+		LRK55_RS17440	0.76	+3.4
3,788,704	+		LRK55_RS17440	0.76	+2.2
3,788,704	+		LRK55_RS17440	0.76	-1.6
3,788,704	+		LRK55_RS17440	0.76	+1.2
3,788,704	+		LRK55_RS17440	0.76	-0.5
3,788,704	+		LRK55_RS17440	0.76	-1.1
3,788,704	+		LRK55_RS17440	0.76	+0.3
3,788,704	+		LRK55_RS17440	0.76	-2.1
3,788,705	-		LRK55_RS17440	0.76	+2.1
3,788,705	-		LRK55_RS17440	0.76	-1.4
3,788,705	-		LRK55_RS17440	0.76	+1.6
3,788,705	-		LRK55_RS17440	0.76	+1.7
3,788,705	-		LRK55_RS17440	0.76	+1.4
3,788,705	-		LRK55_RS17440	0.76	+0.9
3,788,705	-		LRK55_RS17440	0.76	+1.2
3,788,705	-		LRK55_RS17440	0.76	+1.2
3,788,705	-		LRK55_RS17440	0.76	+2.1
3,788,705	-		LRK55_RS17440	0.76	+0.9
3,788,705	-		LRK55_RS17440	0.76	+1.9
3,788,705	-		LRK55_RS17440	0.76	-0.8
3,788,705	-		LRK55_RS17440	0.76	+1.0
3,788,854	+				+1.3
3,788,854	+				-1.6
3,788,854	+				-0.1
3,788,854	+				+1.2
3,788,854	+				+1.2
3,788,855	-				+0.1
3,788,855	-				-2.4
3,788,855	-				+0.5
3,788,886	+				+0.5
3,788,886	+				-2.0
3,788,886	+				-2.1
3,788,886	+				-0.8
3,788,887	-				+2.9
3,788,887	-				-0.8
3,789,003	+		LRK55_RS17445	0.45	+0.5
3,789,003	+		LRK55_RS17445	0.45	-1.5
3,789,003	+		LRK55_RS17445	0.45	+0.6
3,789,003	+		LRK55_RS17445	0.45	-0.8
3,789,004	-		LRK55_RS17445	0.45	+3.2
3,789,004	-		LRK55_RS17445	0.45	-0.4
3,789,004	-		LRK55_RS17445	0.45	-0.6
3,789,004	-		LRK55_RS17445	0.45	+0.4
3,789,004	-		LRK55_RS17445	0.45	-0.4
3,789,004	-		LRK55_RS17445	0.45	+0.4
3,789,004	-		LRK55_RS17445	0.45	-0.6
3,789,004	-		LRK55_RS17445	0.45	-0.3