Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS08360

Experiment: R2A_PIPES with Cadmium chloride 64 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Cadmium chloride 64 uM
1,827,697	-		LRK55_RS08350	0.65	-0.9
1,827,815	+		LRK55_RS08350	0.73	-2.2
1,827,815	+		LRK55_RS08350	0.73	+0.4
1,827,815	+		LRK55_RS08350	0.73	-3.8
1,827,815	+		LRK55_RS08350	0.73	-1.8
1,827,815	+		LRK55_RS08350	0.73	-1.6
1,827,815	+		LRK55_RS08350	0.73	-0.0
1,827,815	+		LRK55_RS08350	0.73	-1.8
1,827,816	-		LRK55_RS08350	0.73	-1.1
1,827,816	-		LRK55_RS08350	0.73	-0.7
1,827,816	-		LRK55_RS08350	0.73	-0.4
1,827,816	-		LRK55_RS08350	0.73	-0.8
1,827,816	-		LRK55_RS08350	0.73	-4.6
1,827,816	-		LRK55_RS08350	0.73	-3.0
1,827,816	-		LRK55_RS08350	0.73	-1.4
1,827,816	-		LRK55_RS08350	0.73	-1.5
1,827,816	-		LRK55_RS08350	0.73	+0.2
1,827,816	-		LRK55_RS08350	0.73	-2.8
1,827,816	-		LRK55_RS08350	0.73	-1.3
1,827,816	-		LRK55_RS08350	0.73	-2.1
1,827,816	-		LRK55_RS08350	0.73	-3.0
1,827,816	-		LRK55_RS08350	0.73	-1.8
1,827,816	-		LRK55_RS08350	0.73	-0.8
1,827,821	+		LRK55_RS08350	0.74	-2.8
1,827,822	-		LRK55_RS08350	0.74	-0.4
1,827,822	-		LRK55_RS08350	0.74	-1.5
1,827,822	-		LRK55_RS08350	0.74	-1.1
1,827,822	-		LRK55_RS08350	0.74	-0.8
1,827,822	-		LRK55_RS08350	0.74	-0.4
1,827,822	-		LRK55_RS08350	0.74	-0.9
1,827,822	-		LRK55_RS08350	0.74	-2.7
1,827,822	-		LRK55_RS08350	0.74	-4.0
1,827,822	-		LRK55_RS08350	0.74	-1.4
1,827,869	+		LRK55_RS08350	0.77	-1.6
1,827,869	+		LRK55_RS08350	0.77	-0.7
1,827,869	+		LRK55_RS08350	0.77	-3.2
1,827,869	+		LRK55_RS08350	0.77	-3.8
1,827,869	+		LRK55_RS08350	0.77	-2.8
1,827,869	+		LRK55_RS08350	0.77	-1.8
1,827,869	+		LRK55_RS08350	0.77	-3.7
1,827,870	-		LRK55_RS08350	0.77	-0.8
1,827,881	+		LRK55_RS08350	0.78	-0.6
1,827,881	+		LRK55_RS08350	0.78	-1.4
1,827,881	+		LRK55_RS08350	0.78	-3.6
1,827,881	+		LRK55_RS08350	0.78	-3.0
1,827,881	+		LRK55_RS08350	0.78	-1.3
1,827,882	-		LRK55_RS08350	0.78	-0.8
1,827,882	-		LRK55_RS08350	0.78	-2.6
1,827,882	-		LRK55_RS08350	0.78	-2.0
1,827,882	-		LRK55_RS08350	0.78	-0.1
1,827,882	-		LRK55_RS08350	0.78	+0.8
1,827,882	-		LRK55_RS08350	0.78	-1.9
1,827,882	-		LRK55_RS08350	0.78	-2.8
1,827,882	-		LRK55_RS08350	0.78	-2.7
1,827,882	-		LRK55_RS08350	0.78	-3.0
1,827,882	-		LRK55_RS08350	0.78	+0.8
1,827,884	+		LRK55_RS08350	0.78	-1.8
1,827,884	+		LRK55_RS08350	0.78	-3.0
1,827,884	+		LRK55_RS08350	0.78	-1.1
1,827,884	+		LRK55_RS08350	0.78	-2.1
1,827,884	+		LRK55_RS08350	0.78	-1.4
1,827,884	+		LRK55_RS08350	0.78	-1.2
1,827,884	+		LRK55_RS08350	0.78	-3.4
1,827,884	+		LRK55_RS08350	0.78	-2.4
1,827,884	+		LRK55_RS08350	0.78	-1.1
1,827,884	+		LRK55_RS08350	0.78	-2.2
1,827,884	+		LRK55_RS08350	0.78	-2.2
1,827,884	+		LRK55_RS08350	0.78	-2.2
1,827,884	+		LRK55_RS08350	0.78	-0.5
1,827,884	+		LRK55_RS08350	0.78	-2.2
1,827,884	+		LRK55_RS08350	0.78	-4.2
1,827,884	+		LRK55_RS08350	0.78	-0.8
1,827,884	+		LRK55_RS08350	0.78	-4.6
1,827,884	+		LRK55_RS08350	0.78	-1.4
1,827,884	+		LRK55_RS08350	0.78	-1.0
1,827,884	+		LRK55_RS08350	0.78	-4.1
1,827,884	+		LRK55_RS08350	0.78	+1.1
1,827,884	+		LRK55_RS08350	0.78	+0.4
1,827,884	+		LRK55_RS08350	0.78	-2.7
1,827,884	+		LRK55_RS08350	0.78	-1.6
1,827,884	+		LRK55_RS08350	0.78	+0.2
1,827,884	+		LRK55_RS08350	0.78	-2.5
1,827,884	+		LRK55_RS08350	0.78	-1.5
1,827,884	+		LRK55_RS08350	0.78	+0.2
1,827,885	-		LRK55_RS08350	0.78	-2.7
1,827,885	-		LRK55_RS08350	0.78	-0.5
1,827,885	-		LRK55_RS08350	0.78	-1.3
1,827,885	-		LRK55_RS08350	0.78	-1.1
1,827,885	-		LRK55_RS08350	0.78	-1.5
1,827,885	-		LRK55_RS08350	0.78	-2.3
1,827,885	-		LRK55_RS08350	0.78	-2.1
1,827,885	-		LRK55_RS08350	0.78	-2.5
1,827,885	-		LRK55_RS08350	0.78	-3.0
1,827,885	-		LRK55_RS08350	0.78	-1.6
1,827,885	-		LRK55_RS08350	0.78	-3.1
1,827,885	-		LRK55_RS08350	0.78	-0.5
1,827,885	-		LRK55_RS08350	0.78	-2.0
1,827,885	-		LRK55_RS08350	0.78	-3.1
1,827,885	-		LRK55_RS08350	0.78	-0.3
1,827,885	-		LRK55_RS08350	0.78	+1.0
1,827,911	+		LRK55_RS08350	0.80	-2.0
1,827,911	+		LRK55_RS08350	0.80	+1.2
1,827,911	+		LRK55_RS08350	0.80	-1.6
1,827,911	+		LRK55_RS08350	0.80	-2.7
1,827,911	+		LRK55_RS08350	0.80	-0.9
1,827,912	-		LRK55_RS08350	0.80	-1.1
1,827,912	-		LRK55_RS08350	0.80	+0.0
1,827,912	-		LRK55_RS08350	0.80	-3.3
1,827,912	-		LRK55_RS08350	0.80	-1.1
1,827,912	-		LRK55_RS08350	0.80	-2.4
1,827,912	-		LRK55_RS08350	0.80	-1.4
1,827,912	-		LRK55_RS08350	0.80	-3.1
1,827,912	-		LRK55_RS08350	0.80	-1.0
1,827,912	-		LRK55_RS08350	0.80	-2.5
1,827,912	-		LRK55_RS08350	0.80	-2.0
1,828,034	+		LRK55_RS08350	0.88	-2.8
1,828,034	+		LRK55_RS08350	0.88	-2.6
1,828,035	-		LRK55_RS08350	0.88	-2.3
1,828,035	-		LRK55_RS08350	0.88	-3.0
1,828,124	+				-1.4
1,828,124	+				-2.3
1,828,124	+				-0.6
1,828,124	+				-1.0
1,828,125	-				-2.5
1,828,142	+				-1.1
1,828,142	+				-1.7
1,828,142	+				+0.2
1,828,142	+				-4.0
1,828,142	+				-0.6
1,828,142	+				-0.8
1,828,142	+				-1.0
1,828,143	-				-4.2
1,828,143	-				-1.9
1,828,143	-				-2.0
1,828,143	-				-0.9
1,828,143	-				+0.2
1,828,143	-				-2.7
1,828,143	-				-1.0
1,828,143	-				-2.3
1,828,143	-				-0.8
1,828,143	-				-1.6
1,828,143	-				-0.3
1,828,143	-				-2.1
1,828,143	-				-1.3
1,828,143	-				-0.1
1,828,143	-				-4.2
1,828,143	-				-3.7
1,828,143	-				-0.6
1,828,569	+				+0.1
1,828,569	+				+1.0
1,828,569	+				+0.1
1,828,569	+				-2.1
1,828,569	+				-0.5
1,828,569	+				+0.9
1,828,569	+				-1.6
1,828,569	+				+0.7
1,828,569	+				-0.1
1,828,569	+				+0.9
1,828,569	+				-1.2
1,828,569	+				-0.4
1,828,569	+				-1.3
1,828,569	+				-0.4
1,828,570	-				-1.6
1,828,570	-				+0.8
1,828,570	-				+0.1
1,828,570	-				-2.0
1,828,570	-				-2.4
1,828,570	-				+1.0
1,828,570	-				+1.2
1,828,570	-				+0.6
1,828,570	-				-1.1
1,828,705	+		LRK55_RS08360	0.12	-0.4
1,828,705	+		LRK55_RS08360	0.12	-2.6
1,828,705	+		LRK55_RS08360	0.12	+0.9
1,828,705	+		LRK55_RS08360	0.12	-1.8
1,828,705	+		LRK55_RS08360	0.12	+1.1
1,828,705	+		LRK55_RS08360	0.12	-1.1
1,828,706	-		LRK55_RS08360	0.12	-1.8
1,828,706	-		LRK55_RS08360	0.12	-0.2
1,828,706	-		LRK55_RS08360	0.12	-2.3
1,828,706	-		LRK55_RS08360	0.12	-2.3
1,828,706	-		LRK55_RS08360	0.12	-0.9
1,828,706	-		LRK55_RS08360	0.12	-1.4
1,829,128	+		LRK55_RS08360	0.63	-0.8
1,829,158	+		LRK55_RS08360	0.67	-2.6
1,829,158	+		LRK55_RS08360	0.67	-1.4
1,829,158	+		LRK55_RS08360	0.67	-1.4
1,829,158	+		LRK55_RS08360	0.67	-1.2
1,829,158	+		LRK55_RS08360	0.67	-1.3
1,829,158	+		LRK55_RS08360	0.67	+0.1
1,829,158	+		LRK55_RS08360	0.67	-1.7
1,829,159	-		LRK55_RS08360	0.67	-2.6
1,829,159	-		LRK55_RS08360	0.67	-1.6
1,829,159	-		LRK55_RS08360	0.67	+0.7
1,829,159	-		LRK55_RS08360	0.67	-2.1
1,829,159	-		LRK55_RS08360	0.67	-2.0
1,829,159	-		LRK55_RS08360	0.67	-3.6
1,829,248	+		LRK55_RS08360	0.78	-2.3
1,829,248	+		LRK55_RS08360	0.78	-0.2
1,829,249	-		LRK55_RS08360	0.78	-2.6
1,829,249	-		LRK55_RS08360	0.78	-1.0
1,829,249	-		LRK55_RS08360	0.78	-0.3
1,829,260	+		LRK55_RS08360	0.79	-2.4
1,829,260	+		LRK55_RS08360	0.79	-2.0
1,829,261	-		LRK55_RS08360	0.79	-1.0
1,829,261	-		LRK55_RS08360	0.79	+0.4
1,829,261	-		LRK55_RS08360	0.79	+0.2
1,829,261	-		LRK55_RS08360	0.79	+0.5
1,829,404	+				-1.3
1,829,404	+				-3.8
1,829,404	+				-2.1
1,829,404	+				-2.8
1,829,405	-				-0.6
1,829,405	-				-3.0
1,829,832	-				-0.6
1,829,899	+		LRK55_RS08370	0.16	-0.9
1,829,899	+		LRK55_RS08370	0.16	+0.9
1,829,899	+		LRK55_RS08370	0.16	+0.5
1,829,900	-		LRK55_RS08370	0.16	-1.6
1,829,900	-		LRK55_RS08370	0.16	+0.4
1,829,900	-		LRK55_RS08370	0.16	+1.1
1,829,900	-		LRK55_RS08370	0.16	+1.9
1,830,076	+		LRK55_RS08370	0.48	-1.6
1,830,076	+		LRK55_RS08370	0.48	-0.1
1,830,076	+		LRK55_RS08370	0.48	-0.7
1,830,077	-		LRK55_RS08370	0.49	+1.0
1,830,077	-		LRK55_RS08370	0.49	+0.1
1,830,384	+				+0.9
1,830,384	+				-2.0
1,830,384	+				-2.3
1,830,385	-				-1.1
1,830,385	-				-0.6
1,830,385	-				-3.0
1,830,405	+				+1.1
1,830,405	+				+0.4
1,830,405	+				-1.1
1,830,405	+				-0.8
1,830,405	+				+0.4
1,830,405	+				+1.2
1,830,405	+				+0.3
1,830,406	-				-0.5
1,830,406	-				+1.1
1,830,406	-				+0.5
1,830,406	-				+0.4
1,830,406	-				+0.2
1,830,406	-				+1.9
1,830,406	-				+0.2
1,830,420	+				-0.4
1,830,420	+				-2.6
1,830,420	+				+0.7
1,830,421	-				-0.7
1,830,421	-				-1.6