Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS06570

Experiment: R2A_PIPES with Cadmium chloride 64 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Cadmium chloride 64 uM
1,419,232	+				-1.8
1,419,248	-				-0.6
1,419,248	-				-2.3
1,419,248	-				-0.6
1,419,248	-				-2.8
1,419,251	+				+1.1
1,419,251	+				+0.9
1,419,252	-				+0.4
1,419,315	-				-0.8
1,419,342	+				+2.8
1,419,342	+				+2.2
1,419,527	-		LRK55_RS06565	0.41	-2.1
1,419,712	+				-0.4
1,419,712	+				+0.9
1,419,712	+				+0.3
1,419,713	-				+1.3
1,419,713	-				+2.4
1,419,713	-				-0.5
1,419,713	-				-0.8
1,419,713	-				+0.9
1,419,746	+				-2.2
1,419,746	+				+1.1
1,419,746	+				-0.6
1,419,747	-				+1.6
1,419,748	+				-1.0
1,419,748	+				-2.8
1,419,748	+				-0.2
1,419,748	+				-1.3
1,419,748	+				+1.2
1,419,748	+				-0.2
1,419,749	-				+0.7
1,419,749	-				-0.3
1,419,749	-				-1.3
1,419,749	-				-0.9
1,420,244	+		LRK55_RS06570	0.29	+0.8
1,420,245	-		LRK55_RS06570	0.29	+1.9
1,420,340	+		LRK55_RS06570	0.35	-1.1
1,420,362	-		LRK55_RS06570	0.36	-1.1
1,420,456	-		LRK55_RS06570	0.42	+0.2
1,420,456	-		LRK55_RS06570	0.42	-1.3
1,420,500	-		LRK55_RS06570	0.45	+0.2
1,420,697	+		LRK55_RS06570	0.57	-2.1
1,420,697	+		LRK55_RS06570	0.57	-1.9
1,420,697	+		LRK55_RS06570	0.57	+1.2
1,420,697	+		LRK55_RS06570	0.57	-1.1
1,420,829	+		LRK55_RS06570	0.65	-0.3
1,421,156	+		LRK55_RS06570	0.85	-1.1
1,421,392	-				+0.4
1,421,393	+				-3.1
1,421,394	-				-0.5
1,421,486	+				+0.3
1,421,486	+				+0.5
1,421,486	+				+0.3
1,421,486	+				-1.5
1,421,486	+				+0.6
1,421,486	+				-0.5
1,421,486	+				-0.9
1,421,487	-				-0.5
1,421,487	-				+0.8
1,421,487	-				-1.1
1,421,487	-				-0.9
1,421,487	-				+2.6
1,421,497	+				-0.8
1,421,498	-				+0.4
1,421,498	-				+0.5
1,421,498	-				-0.5
1,421,498	-				-1.7
1,421,498	-				+0.2
1,421,549	+				-0.8
1,421,558	+				+0.0
1,421,558	+				+1.2
1,421,558	+				+0.6
1,421,558	+				+0.0
1,421,558	+				-2.1
1,421,558	+				+0.3
1,421,558	+				+0.6
1,421,559	-				-0.2
1,421,559	-				-0.9
1,421,559	-				+1.7
1,421,559	-				+0.9
1,421,561	+				-0.4
1,421,562	-				+1.5
1,421,562	-				-1.0
1,421,562	-				+0.8
1,421,562	-				-2.5
1,421,627	+		LRK55_RS06575	0.12	-2.1
1,421,627	+		LRK55_RS06575	0.12	-0.1
1,421,627	+		LRK55_RS06575	0.12	-0.2
1,421,627	+		LRK55_RS06575	0.12	-1.8
1,421,627	+		LRK55_RS06575	0.12	-1.3
1,421,627	+		LRK55_RS06575	0.12	-0.7
1,421,627	+		LRK55_RS06575	0.12	-0.3
1,421,627	+		LRK55_RS06575	0.12	-0.3
1,421,628	-		LRK55_RS06575	0.12	+0.3
1,421,628	-		LRK55_RS06575	0.12	-0.3
1,421,628	-		LRK55_RS06575	0.12	+0.8
1,421,628	-		LRK55_RS06575	0.12	+1.3
1,421,673	-		LRK55_RS06575	0.18	-0.6
1,421,768	+		LRK55_RS06575	0.32	-0.3
1,421,768	+		LRK55_RS06575	0.32	+0.7
1,421,769	-		LRK55_RS06575	0.32	-0.6
1,421,769	-		LRK55_RS06575	0.32	-0.3
1,421,769	-		LRK55_RS06575	0.32	-0.3
1,421,769	-		LRK55_RS06575	0.32	-2.5
1,421,769	-		LRK55_RS06575	0.32	+0.1
1,421,769	-		LRK55_RS06575	0.32	-0.8
1,421,769	-		LRK55_RS06575	0.32	+0.1
1,421,769	-		LRK55_RS06575	0.32	-0.6
1,421,819	+		LRK55_RS06575	0.39	-0.2
1,421,819	+		LRK55_RS06575	0.39	+1.6
1,421,820	-		LRK55_RS06575	0.39	+0.2
1,421,820	-		LRK55_RS06575	0.39	+0.1
1,421,820	-		LRK55_RS06575	0.39	-0.8
1,421,820	-		LRK55_RS06575	0.39	+1.8
1,421,900	+		LRK55_RS06575	0.50	+0.6
1,421,900	+		LRK55_RS06575	0.50	-2.3
1,421,900	+		LRK55_RS06575	0.50	-3.4
1,421,900	+		LRK55_RS06575	0.50	+0.1
1,421,900	+		LRK55_RS06575	0.50	-1.3
1,421,900	+		LRK55_RS06575	0.50	-1.3
1,421,900	+		LRK55_RS06575	0.50	-2.2
1,421,901	-		LRK55_RS06575	0.50	+1.5
1,421,901	-		LRK55_RS06575	0.50	+0.2
1,421,901	-		LRK55_RS06575	0.50	-1.1
1,421,903	+		LRK55_RS06575	0.51	+0.8
1,421,903	+		LRK55_RS06575	0.51	-1.0
1,421,903	+		LRK55_RS06575	0.51	+0.7
1,421,903	+		LRK55_RS06575	0.51	+0.5
1,421,904	-		LRK55_RS06575	0.51	+0.5
1,421,904	-		LRK55_RS06575	0.51	-2.5
1,421,904	-		LRK55_RS06575	0.51	-0.8
1,421,969	+		LRK55_RS06575	0.60	-0.6
1,421,969	+		LRK55_RS06575	0.60	+2.2
1,421,970	-		LRK55_RS06575	0.60	+0.6
1,421,970	-		LRK55_RS06575	0.60	-3.6
1,421,970	-		LRK55_RS06575	0.60	+1.0
1,421,970	-		LRK55_RS06575	0.60	+1.7
1,421,970	-		LRK55_RS06575	0.60	-1.6
1,421,970	-		LRK55_RS06575	0.60	-0.1
1,421,978	+		LRK55_RS06575	0.61	+1.2
1,421,978	+		LRK55_RS06575	0.61	-1.3
1,421,979	-		LRK55_RS06575	0.61	-1.1
1,421,979	-		LRK55_RS06575	0.61	+1.7
1,422,035	+		LRK55_RS06575	0.69	+0.3
1,422,035	+		LRK55_RS06575	0.69	+1.2
1,422,035	+		LRK55_RS06575	0.69	+0.3
1,422,035	+		LRK55_RS06575	0.69	+0.2
1,422,035	+		LRK55_RS06575	0.69	-1.6
1,422,035	+		LRK55_RS06575	0.69	+0.4
1,422,036	-		LRK55_RS06575	0.69	+0.7
1,422,036	-		LRK55_RS06575	0.69	+1.5
1,422,036	-		LRK55_RS06575	0.69	-1.4
1,422,036	-		LRK55_RS06575	0.69	-1.9
1,422,036	-		LRK55_RS06575	0.69	+0.2
1,422,036	-		LRK55_RS06575	0.69	+0.2
1,422,077	+		LRK55_RS06575	0.75	+1.2
1,422,077	+		LRK55_RS06575	0.75	-0.3
1,422,077	+		LRK55_RS06575	0.75	+1.0
1,422,077	+		LRK55_RS06575	0.75	-2.7
1,422,077	+		LRK55_RS06575	0.75	+0.2
1,422,077	+		LRK55_RS06575	0.75	+0.7
1,422,077	+		LRK55_RS06575	0.75	-1.6
1,422,077	+		LRK55_RS06575	0.75	+0.1
1,422,078	-		LRK55_RS06575	0.75	-0.7
1,422,078	-		LRK55_RS06575	0.75	-1.2
1,422,078	-		LRK55_RS06575	0.75	+0.2
1,422,078	-		LRK55_RS06575	0.75	+0.5
1,422,078	-		LRK55_RS06575	0.75	+1.3
1,422,078	-		LRK55_RS06575	0.75	-2.7
1,422,078	-		LRK55_RS06575	0.75	+2.2
1,422,078	-		LRK55_RS06575	0.75	-2.5
1,422,078	-		LRK55_RS06575	0.75	+0.1
1,422,083	+		LRK55_RS06575	0.76	+0.3
1,422,084	-		LRK55_RS06575	0.76	-4.1
1,422,173	+		LRK55_RS06575	0.89	-1.4
1,422,173	+		LRK55_RS06575	0.89	-0.9
1,422,174	-		LRK55_RS06575	0.89	+2.8
1,422,227	+				+1.5
1,422,228	-				-2.1
1,422,251	+				+0.7
1,422,252	-				-0.3
1,422,360	+		LRK55_RS06580	0.15	-0.5
1,422,360	+		LRK55_RS06580	0.15	+0.4
1,422,360	+		LRK55_RS06580	0.15	-0.8
1,422,360	+		LRK55_RS06580	0.15	+1.2
1,422,360	+		LRK55_RS06580	0.15	-0.8
1,422,360	+		LRK55_RS06580	0.15	-1.3
1,422,360	+		LRK55_RS06580	0.15	-0.3
1,422,360	+		LRK55_RS06580	0.15	-0.3
1,422,360	+		LRK55_RS06580	0.15	+0.1
1,422,360	+		LRK55_RS06580	0.15	-1.1
1,422,360	+		LRK55_RS06580	0.15	-0.0
1,422,360	+		LRK55_RS06580	0.15	+1.1
1,422,360	+		LRK55_RS06580	0.15	-0.6
1,422,360	+		LRK55_RS06580	0.15	+0.2
1,422,360	+		LRK55_RS06580	0.15	-0.6
1,422,360	+		LRK55_RS06580	0.15	+0.1
1,422,360	+		LRK55_RS06580	0.15	-0.8
1,422,360	+		LRK55_RS06580	0.15	-0.9
1,422,361	-		LRK55_RS06580	0.15	+1.0
1,422,361	-		LRK55_RS06580	0.15	-0.4
1,422,361	-		LRK55_RS06580	0.15	-0.8
1,422,361	-		LRK55_RS06580	0.15	-1.6
1,422,361	-		LRK55_RS06580	0.15	-1.3
1,422,361	-		LRK55_RS06580	0.15	-0.2
1,422,361	-		LRK55_RS06580	0.15	-1.0
1,422,361	-		LRK55_RS06580	0.15	-0.2
1,422,361	-		LRK55_RS06580	0.15	+0.9
1,422,361	-		LRK55_RS06580	0.15	-0.2
1,422,361	-		LRK55_RS06580	0.15	-0.1
1,422,361	-		LRK55_RS06580	0.15	-1.0
1,422,361	-		LRK55_RS06580	0.15	+2.6
1,422,361	-		LRK55_RS06580	0.15	-0.1
1,422,361	-		LRK55_RS06580	0.15	-1.8
1,422,361	-		LRK55_RS06580	0.15	-0.4
1,422,375	-		LRK55_RS06580	0.18	-2.1